Select Publications

by Dr Bruno Andre Gaeta

Journal articles

Wang Y; Jackson KJ; Davies J; Chen Z; Gaeta BA; Rimmer J; Sewell WA; Collins AM, 2014, 'IgE-associated IGHV genes from venom and peanut allergic individuals lack mutational evidence of antigen selection.', PLoS One, vol. 9, no. 2, pp. e89730, http://dx.doi.org/10.1371/journal.pone.0089730

Ballouz S; Liu JY; Oti M; Gaeta B; Fatkin D; Bahlo M; Wouters MA, 2014, 'Candidate disease gene prediction using Gentrepid: application to a genome-wide association study on coronary artery disease.', Molecular Genetics and Genomic Medicine, vol. 2, no. 1, pp. 44 - 57, http://dx.doi.org/10.1002/mgg3.40

Corpas M; Jimenez RC; Bongcam-Rudloff E; Budd A; Brazas MD; Fernandes PL; Gaeta B; van Gelder C; Korpelainen E; Lewitter F, 2014, 'The GOBLET Training Portal: A Global Repository of Bioinformatics Training Materials, Courses and Trainers.', Bioinformatics, http://dx.doi.org/10.1093/bioinformatics/btu601

Welch L; Lewitter F; Schwartz R; Brooksbank C; Radivojac P; Gaeta B; Schneider MV, 2014, 'Bioinformatics curriculum guidelines: toward a definition of core competencies.', PLoS Computational Biology, vol. 10, no. 3, pp. e1003496, http://dx.doi.org/10.1371/journal.pcbi.1003496

Ballouz S; Liu JY; George RA; Bains N; Liu A; Oti M; Gaeta B; Fatkin D; Wouters MA, 2013, 'Gentrepid V2.0: a web server for candidate disease gene prediction.', BMC Bioinformatics, vol. 14, pp. 249, http://dx.doi.org/10.1186/1471-2105-14-249

Jackson KJ; Wang Y; Gaeta BA; Pomat W; Siba P; Rimmer J; Sewell WA; Collins AM, 2012, 'Divergent human populations show extensive shared IGK rearrangements in peripheral blood B cells.', Immunogenetics, vol. 64, no. 1, pp. 3 - 14, http://dx.doi.org/10.1007/s00251-011-0559-z

Jackson KJ; Boyd S; Gaëta BA; Collins AM, 2010, 'Benchmarking the performance of human antibody gene alignment utilities using a 454 sequence dataset.', Bioinformatics, vol. 26, no. 24, pp. 3129 - 3130, http://dx.doi.org/10.1093/bioinformatics/btq604

Boyd SD; Gaëta BA; Jackson KJ; Fire AZ; Marshall EL; Merker JD; Maniar JM; Zhang LN; Sahaf B; Jones CD, 2010, 'Individual variation in the germline Ig gene repertoire inferred from variable region gene rearrangements.', Journal of Immunology, vol. 184, no. 12, pp. 6986 - 6992, http://dx.doi.org/10.4049/jimmunol.1000445

Kadupitige SR; Leung KC; Sellmeier J; Sivieng J; Catchpoole DR; Bain ME; Gaëta BA, 2009, 'MINER: exploratory analysis of gene interaction networks by machine learning from expression data.', BMC Genomics, vol. 10 Suppl 3, pp. S17, http://dx.doi.org/10.1186/1471-2164-10-s3-s17

Fei W; Shui G; Gaeta B; Du X; Kuerschner L; Li P; Brown AJ; Wenk MR; Parton RG; Yang H, 2008, ' Fld1p, a functional homologue of human seipin, regulates the size of lipid droplets in yeast', The Journal of Cell Biology, vol. 180, no. 3, pp. 473 - 482, http://dx.doi.org/10.1083/jcb.200711136

Gaëta BA; Malming HR; Jackson KJ; Bain ME; Wilson P; Collins AM, 2007, 'iHMMune-align: hidden Markov model-based alignment and identification of germline genes in rearranged immunoglobulin gene sequences.', Bioinformatics, vol. 23, no. 13, pp. 1580 - 1587, http://dx.doi.org/10.1093/bioinformatics/btm147

Jackson KJ; Gaëta BA; Collins AM, 2007, 'Identifying highly mutated IGHD genes in the junctions of rearranged human immunoglobulin heavy chain genes.', Journal of Immunological Methods, vol. 324, no. 1-2, pp. 26 - 37, http://dx.doi.org/10.1016/j.jim.2007.04.011

Lee CE; Gaëta B; Malming HR; Bain ME; Sewell WA; Collins AM, 2006, 'Reconsidering the human immunoglobulin heavy-chain locus: 1. An evaluation of the expressed human IGHD gene repertoire.', Immunogenetics, vol. 57, no. 12, pp. 917 - 925, http://dx.doi.org/10.1007/s00251-005-0062-5

Jackson KJ; Gaeta B; Sewell W; Collins AM, 2004, 'Exonuclease activity and P nucleotide addition in the generation of the expressed immunoglobulin repertoire.', BMC Immunology, vol. 5, pp. 19, http://dx.doi.org/10.1186/1471-2172-5-19

Collins AM; Ikutani M; Puiu D; Buck GA; Nadkarni A; Gaeta B, 2004, 'Partitioning of rearranged Ig genes by mutation analysis demonstrates D-D fusion and V gene replacement in the expressed human repertoire.', Journal of Immunology, vol. 172, no. 1, pp. 340 - 348, http://dx.doi.org/10.4049/jimmunol.172.1.340

Gaëta BA, 2000, 'BLAST on the Web.', BioTechniques: the journal of laboratory technology for bioresearch, vol. 28, no. 3, pp. 436 - 440

Littlejohn TG; Bucholtz CA; Campbell RMM; Gaeta BA; Huynh C; Kim SH, 1996, 'Computing for biotechnology - WebANGIS', Australasian Biotechnology, vol. 6, no. 4, pp. 211 - 217

GAETA BA, 1995, 'DATABASE SIMILARITY SEARCHING USING BLAST AND FASTA', Australasian Biotechnology, vol. 5, no. 5, pp. 282 - 290

Gaëta BA; Borthwick I; Stanley KK, 1994, 'The 5'-flanking region of the alpha 2MR/LRP gene contains an enhancer-like cluster of Sp1 binding sites.', Biochimica et Biophysica Acta: international journal of biochemistry and biophysics, vol. 1219, no. 2, pp. 307 - 313

Gaëta BA; Sharp SJ; Stewart TS, 1990, 'Saturation mutagenesis of the Drosophila tRNA(Arg) gene B-Box intragenic promoter element: requirements for transcription activation and stable complex formation.', Nucleic Acids Research, vol. 18, no. 6, pp. 1541 - 1548, http://dx.doi.org/10.1093/nar/18.6.1541

Conference Papers

Chen Z; Collins AM; Wang Y; Gaëta BA, 2010, 'Clustering-based identification of clonally-related immunoglobulin gene sequence sets.', in Immunome research, pp. S4, http://dx.doi.org/10.1186/1745-7580-6-s1-s4

Helal M; El-Gindy H; Mullin L; Gaeta BA, 2008, 'Parallelizing Optimal Multiple Sequence Alignment by Dynamic Programming', in PROCEEDINGS OF THE 2008 INTERNATIONAL SYMPOSIUM ON PARALLEL ANDDISTRIBUTED PROCESSING WITH APPLICATIONS, Ieee Computer Soc, Los Alamitos, 1 January 2008, http://dx.doi.org/10.1109/ISPA.2008.93

Helal M; Mullin L; Elgindy H; Gaeta BA, 2007, 'Optimal distributed multiple sequence alignment using conformal computing methods', in 2007 International conference on high performance computing, networking and communication systems, presented at International conference on high performance computing, networking and communication systems 2007, Orlando, Florida, USA, 9 - 12 July 2007

Bain ME; Ahsan N; Potter JM; Gaeta BA; Temple MD; Dawes IW, 2006, 'Learning causal networks from microarray data', in Workshop on Intelligent systems for bioinformatics, 2006, presented at Workshop on Intelligent systems for bioinformatics, 2006, Hobart, 4 December 2006

Bain ME; Gaeta BA, 2003, 'Learning Quantitative Gene Interactions from Microarray Data', in 2003 Congress on Evolutionary Computation CEC 2003, presented at IEEE Congress on Evolutionary Computation (CEC 2003), Canberra, 8 - 12 December 2003

Collins A; Ikutani M; Nadkarni A; Gaeta B; Sewell W, 2003, 'Analysis of the distribution of point mutations can be used to evaluate D segment alignments of rearranged immunoglobulin heavy chain genes', in FASEB JOURNAL, FEDERATION AMER SOC EXP BIOL, pp. C193 - C193, presented at 90th Annual Meeting of the American-Association-for-Immunologists, DENVER, COLORADO, 6 - 10 May 2003


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