Select Publications
Journal Articles
Jackson, KJ, Wang, Y, Gaeta, BA, Pomat, W, Siba, PM, Sewell, WA & Collins, AM, 2012, 'Divergent human populations show extensive shared IGK rearrangements in peripheral blood B cells', Immunogenetics, vol. 64, no. 1, pp. 3 - 14, http://dx.doi.org/10.1007/s00251-011-0559-z
Boyd, S, Gaeta, BA, Jackson, KJ, Fire, AZ, Marshall, EL, Merker, JD, Maniar, JM, Zhang, LN, Sahaf, B, Jones, CD, Simen, BB, Hanczaruk, B, Nguyen, KD, Nadeau, KC, Egholm, M, Miklos, DB, Zehnder, JL & Collins, AM, 2010, 'Individual variation in the germline immunoglobulin gene repertoire inferred from Variable Region gene rearrangements', Journal of Immunology, vol. 184, no. 12, pp. 6986 - 6992, http://dx.doi.org/10.4049/jimmunol.1000445
Jackson, KJ, Boyd, S, Gaeta, BA & Collins, AM, 2010, 'Benchmarking the performance of human antibody gene alignment utilities using a 454 sequence dataset', Bioinformatics, vol. 26, no. 24, pp. 3129 - 3130, http://dx.doi.org/10.1093
Kadupitige, Leung, KC, Sellmeier, J, Sivieng, J, Catchpoole, DR, Bain, ME & Gaeta, BA, 2009, 'MINER: exploratory analysis of gene interaction networks by machine learning from expression data', BMC Genomics, vol. 10 Suppl 3, pp. S17, http://www.biomedcentral.com/1471-2164/10/S3/S17
Fei, W, Shui, G, Gaeta, BA, Du, XR, Kuerschner, L, Liu, P, Brown, AJ, Wenk, M, Parton, R & Yang, H, 2008, 'Fld1p, a functional homologue of human seipin, regulates the size of lipid droplets in yeast', Journal of Cell Biology, vol. 180, pp. 473 - 482, http://dx.doi.org/10.1083/icb.200711136
Jackson, KJ, Gaeta, BA & Collins, AM, 2007, 'Identifying highly mutated IGHD genes in the junctions of rearranged human immunoglobulin heavy chain genes', Journal of Immunological Methods, vol. 324, pp. 26 - 37
Gaeta, BA, Malming, H, Jackson, KJ, Bain, ME, Wilson, PD & Collins, AM, 2007, 'iHMMune-align: hidden Markov model-based alignment and identification of germline genes in rearranged immunoglobulin gene sequences', Bioinformatics, vol. 23, pp. 1580 - 1587
Lee, CE, Gaeta, BA, Malming, H, Bain, ME, Sewell, WA & Collins, AM, 2006, 'Reconsidering the human immunoglobulin heavy-chain locus: 1. An evaluation of the expressed human IGHD gene repertoire', Immunogenetics, vol. 57, pp. 917 - 925
Jackson, KJ, Gaeta, BA, Sewell, WA & Collins, AM, 2004, 'Exonuclease activity and P nucleotide addition in the generation of the expressed immunoglobulin repertoire', BMC Immunology [Electronic Resource], vol. 5, pp. 19 - 19, http://www.sciencedirect.com/science/article/B6WVB-4DCMWPN-C7/2/6ddd51d3d5a4b4c9e01603c7452ea881
Collins, AM, Ikutani, M, Puiu, D, Buck, G, Nadkarni, A & Gaeta, BA, 2004, 'Partitioning of rearranged Ig genes by mutation analysis demonstrates D-D fusion and V gene replacement in the expressed human repertoire', Journal of Immunology, vol. 172, pp. 340 - 348
Conference Papers
Chen Z, Collins AM, Wang Y & Gaeta BA, 2010, 'Clustering-based identification of clonally related immunoglobulin gene sequence sets', in Immunome Research, presented at Ninth International Conference on Bioinformatics (InCoB2010), Tokyo, Japan, 26-28 September 2010, http://dx.doi.org/10.1186/1745-7580-6-S1-S4
Helal, M, El-Gindy, H, Mullin, L & Gaeta, BA, 2008, 'Parallelizing Optimal Multiple Sequence Alignment by Dynamic Programming', in PROCEEDINGS OF THE 2008 INTERNATIONAL SYMPOSIUM ON PARALLEL ANDDISTRIBUTED PROCESSING WITH APPLICATIONS, Ieee Computer Soc, Los Alamitos, presented at , http://dx.doi.org/10.1109/ISPA.2008.93
Helal, M, Mullin, L, Elgindy, H & Gaeta, BA, 2007, 'Optimal distributed multiple sequence alignment using conformal computing methods', in 2007 International conference on high performance computing, networking and communication systems, presented at International conference on high performance computing, networking and communication systems 2007, Orlando, Florida, USA, 9 - 12 July 2007
Bain, ME, Ahsan, N, Potter, JM, Gaeta, BA, Temple, MD & Dawes, IW, 2006, 'Learning causal networks from microarray data', in Workshop on Intelligent systems for bioinformatics, 2006, presented at Workshop on Intelligent systems for bioinformatics, 2006, Hobart, 4 December 2006
Bain, ME & Gaeta, BA, 2003, 'Learning Quantitative Gene Interactions from Microarray Data', in 2003 Congress on Evolutionary Computation CEC 2003, presented at IEEE Congress on Evolutionary Computation (CEC 2003), Canberra, 8 - 12 December 2003