Select Publications

Book Chapters

Böcking T; Upadhyayula S; Rapoport I; Capraro BR; Kirchhausen T, 2018, 'Reconstitution of clathrin coat disassembly for fluorescence microscopy and single-molecule analysis', in Clathrin-Mediated Endocytosis. Methods in Molecular Biology, Humana Press, New York, NY, pp. 121 - 146, http://dx.doi.org/10.1007/978-1-4939-8719-1_10

Boecking T; Gooding JJ, 2007, 'Biomimetic Membranes for Biosensor Applications', in Martin DK (ed.), Nanobiotechnology for Biomimetic Membranes, edn. Original, Springer Publishing Company, USA, pp. 127 - 166

Journal articles

Lau D; Walsh JC; Mousapasandi A; Ariotti N; Shah VB; Turville S; Jacques DA; Böcking T, 2020, 'Self-Assembly of Fluorescent HIV Capsid Spheres for Detection of Capsid Binders', Langmuir, http://dx.doi.org/10.1021/acs.langmuir.0c00103

Mallery DL; Faysal KMR; Kleinpeter A; Wilson MSC; Vaysburd M; Fletcher AJ; Novikova M; Böcking T; Freed EO; Saiardi A; James LC, 2019, 'Cellular IP6 Levels Limit HIV Production while Viruses that Cannot Efficiently Package IP6 Are Attenuated for Infection and Replication', Cell Reports, vol. 29, pp. 3983 - 3996.e4, http://dx.doi.org/10.1016/j.celrep.2019.11.050

James LC; Böcking T, 2019, 'Building Complexity: Making and Breaking Synthetic Subunits of the HIV Capsid', Cell Host and Microbe, vol. 26, pp. 151 - 153, http://dx.doi.org/10.1016/j.chom.2019.07.011

Janco M; Rynkiewicz MJ; Li L; Hook J; Eiffe E; Ghosh A; Böcking T; Lehman WJ; Hardeman EC; Gunning PW, 2019, 'Molecular integration of the anti-tropomyosin compound ATM-3507 into the coiled coil overlap region of the cancer-associated Tpm3.1', Scientific reports, vol. 9, pp. 11262, http://dx.doi.org/10.1038/s41598-019-47592-9

Marquez CL; Lau D; Walsh J; Faysal KMR; Parker MW; Turville SG; Bocking T, 2019, 'Fluorescence Microscopy Assay to Measure HIV-1 Capsid Uncoating Kinetics in vitro', BIO-PROTOCOL, vol. 9, http://dx.doi.org/10.21769/BioProtoc.3297

Battle AR; Norton RS; Böcking T; Noji H; Kim KK; Nagayama K, 2019, 'Editorial: Special issue of Biophysical Reviews dedicated to the joint 10th Asian Biophysics Association Symposium and 42nd Australian Society for Biophysics Meeting, Melbourne, Australia, December 2–6, 2018', Biophysical Reviews, vol. 11, pp. 245 - 247, http://dx.doi.org/10.1007/s12551-019-00553-y

Peng W; Shi J; Márquez CL; Lau D; Walsh J; Faysal KMR; Byeon CH; Byeon IJL; Aiken C; Böcking T, 2019, 'Functional analysis of the secondary HIV-1 capsid binding site in the host protein cyclophilin A', Retrovirology, vol. 16, http://dx.doi.org/10.1186/s12977-019-0471-4

Lau D; Walsh JC; Peng W; Shah VB; Turville S; Jacques DA; Böcking T, 2019, 'Fluorescence Biosensor for Real-Time Interaction Dynamics of Host Proteins with HIV-1 Capsid Tubes', ACS Applied Materials and Interfaces, vol. 11, pp. 34586 - 34594, http://dx.doi.org/10.1021/acsami.9b08521

Janco M; Böcking T; He S; Coster ACF, 2018, 'Interactions of tropomyosin Tpm1.1 on a single actin filament: A method for extraction and processing of high resolution TIRF microscopy data', PLoS ONE, vol. 13, pp. e0208586, http://dx.doi.org/10.1371/journal.pone.0208586

Zhao M; Nicovich PR; Janco M; Deng Q; Yang Z; Ma Y; Böcking T; Gaus K; Gooding JJ, 2018, 'Ultralow- and Low-Background Surfaces for Single-Molecule Localization Microscopy of Multistep Biointerfaces for Single-Molecule Sensing', Langmuir, vol. 34, pp. 10012 - 10018, http://dx.doi.org/10.1021/acs.langmuir.8b01487

Márquez CL; Lau D; Walsh J; Shah V; McGuinness C; Wong A; Aggarwal A; Parker MW; Jacques DA; Turville S; Böcking T, 2018, 'Kinetics of HIV-1 capsid uncoating revealed by single-molecule analysis', eLife, vol. 7, http://dx.doi.org/10.7554/eLife.34772

Mallery DL; Márquez CL; McEwan WA; Dickson CF; Jacques DA; Anandapadamanaban M; Bichel K; Towers GJ; Saiardi A; Böcking T; James LC, 2018, 'IP6 is an HIV pocket factor that prevents capsid collapse and promotes DNA synthesis', eLife, vol. 7, http://dx.doi.org/10.7554/eLife.35335

Masedunskas A; Appaduray MA; Lucas CA; Cagigas ML; Heydecker M; Holliday M; Meiring JCM; Hook J; Kee A; White M; Thomas P; Zhang Y; Adelstein RS; Meckel T; Böcking T; Weigert R; Bryce NS; Gunning PW; Hardeman EC, 2018, 'Parallel assembly of actin and tropomyosin, but not myosin II, during de novo actin filament formation in live mice', Journal of Cell Science, vol. 131, http://dx.doi.org/10.1242/jcs.212654

Ramdzan YM; Trubetskov MM; Ormsby AR; Newcombe EA; Sui X; Tobin MJ; Bongiovanni MN; Gras SL; Dewson G; Miller JML; Finkbeiner S; Moily NS; Niclis J; Parish CL; Purcell AW; Baker MJ; Wilce JA; Waris S; Stojanovski D; Böcking T; Ang CS; Ascher DB; Reid GE; Hatters DM, 2017, 'Huntingtin Inclusions Trigger Cellular Quiescence, Deactivate Apoptosis, and Lead to Delayed Necrosis', Cell Reports, vol. 19, pp. 919 - 927, http://dx.doi.org/10.1016/j.celrep.2017.04.029

Nicovich PR; Walsh J; Böcking T; Gaus K, 2017, 'NicoLase - An open-source diode laser combiner, fiber launch, and sequencing controller for fluorescence microscopy', PLoS ONE, vol. 12, http://dx.doi.org/10.1371/journal.pone.0173879

Nicovich PR; Janco M; Sobey T; Gajwani M; Obeidy P; Whan R; Gaus K; Gunning PW; Coster ACF; Böcking T, 2016, 'Effect of surface chemistry on tropomyosin binding to actin filaments on surfaces', Cytoskeleton, vol. 73, pp. 729 - 738, http://dx.doi.org/10.1002/cm.21342

Sierecki E; Giles N; Bowden Q; Polinkovsky ME; Steinbeck J; Arrioti N; Rahman D; Bhumkar A; Nicovich PR; Ross I; Parton RG; Böcking T; Gambin Y, 2016, 'Nanomolar oligomerization and selective co-aggregation of α-synuclein pathogenic mutants revealed by single-molecule fluorescence', Scientific Reports, vol. 6, http://dx.doi.org/10.1038/srep37630

Janco M; Bonello TT; Byun A; Coster ACF; Lebhar H; Dedova I; Gunning PW; Böcking T, 2016, 'The impact of tropomyosins on actin filament assembly is isoform specific', BioArchitecture, vol. 6, pp. 61 - 75, http://dx.doi.org/10.1080/19490992.2016.1201619

Bonello TT; Janco M; Hook J; Byun A; Appaduray M; Dedova I; Hitchcock-DeGregori S; Hardeman EC; Stehn JR; Böcking T; Gunning PW, 2016, 'A small molecule inhibitor of tropomyosin dissociates actin binding from tropomyosin-directed regulation of actin dynamics', Scientific Reports, vol. 6, http://dx.doi.org/10.1038/srep19816

Al-Zyoud WA; Hynson RMG; Ganuelas LA; Coster ACF; Duff AP; Baker MAB; Stewart AG; Giannoulatou E; Ho JWK; Gaus K; Liu D; Lee LK; Böcking T, 2016, 'Binding of transcription factor GabR to DNA requires recognition of DNA shape at a location distinct from its cognate binding site', Nucleic Acids Research, vol. 44, pp. 1411 - 1420, http://dx.doi.org/10.1093/nar/gkv1466

Pham S; Tabarin T; Garvey M; Pade C; Rossy J; Monaghan P; Hyatt A; Böcking T; Leis A; Gaus K; Mak J, 2015, 'Cryo-electron microscopy and single molecule fluorescent microscopy detect CD4 receptor induced HIV size expansion prior to cell entry', Virology, vol. 486, pp. 121 - 133, http://dx.doi.org/10.1016/j.virol.2015.09.006

Polling S; Ormsby AR; Wood RJ; Lee K; Shoubridge C; Hughes JN; Thomas PQ; Griffin MDW; Hill AF; Bowden Q; Böcking T; Hatters DM, 2015, 'Polyalanine expansions drive a shift into α-helical clusters without amyloid-fibril formation', Nature Structural and Molecular Biology, vol. 22, pp. 1008 - 1015, http://dx.doi.org/10.1038/nsmb.3127

Böcking T; Aguet F; Rapoport I; Banzhaf M; Yu A; Zeeh JC; Kirchhausen T, 2014, 'Key interactions for clathrin coat stability', Structure, vol. 22, pp. 819 - 829, http://dx.doi.org/10.1016/j.str.2014.04.002

Ngalim SHA; Magenau A; Zhu Y; Tønnesen L; Fairjones Z; Gooding JJ; Böcking T; Gaus K, 2013, 'Creating adhesive and soluble gradients for imaging cell migration with fluorescence microscopy', Journal of visualized experiments : JoVE, http://dx.doi.org/10.3791/50310

Ngalim SH; Magenau A; Zhu Y; Tønnesen L; Fairjones Z; Gooding JJ; Böcking T; Gaus K, 2013, 'Creating adhesive and soluble gradients for imaging cell migration with fluorescence microscopy.', Journal of visualized experiments : JoVE, http://dx.doi.org/10.3791/50310

Boecking T; Kilian KA; Reece PJ; Gaus K; Gal M; Gooding JJ, 2012, 'Biofunctionalization of free-standing porous silicon films for self-assembly of photonic devices', Soft Matter, vol. 8, pp. 360 - 366, http://dx.doi.org/10.1039/c1sm06651j

Boecking T; Aguet F; Harrison SC; Kirchhausen T, 2011, 'Single-molecule analysis of a molecular disassemblase reveals the mechanism of Hsc70-driven clathrin uncoating', Nature Structural and Molecular Biology, vol. 18, pp. 295 - 301, http://dx.doi.org/10.1038/nsmb.1985

Le saux G; Magenau AI; Gunaratnam K; Kilian KA; Boecking T; Gooding JJ; Gaus K, 2011, 'Spacing of Integrin Ligands Influences Signal Transduction in Endothelial Cells', Biophysical Journal, vol. 101, pp. 764 - 773, http://dx.doi.org/10.1016/j.bpj.2011.06.064

Le saux G; Magenau AI; Boecking T; Gaus K; Gooding JJ, 2011, 'The Relative Importance of Topography and RGD Ligand Density for Endothelial Cell Adhesion', PLoS ONE, vol. 6, pp. e21869, http://dx.doi.org/10.1371/journal.pone.0021869

Qiao H; Guan B; Boecking T; Gal M; Gooding JJ; Reece PJ, 2010, 'Optical properties of II-VI colloidal quantum dot doped porous silicon microcavities', Applied Physics Letters, vol. 96, pp. 161106, http://dx.doi.org/10.1063/1.3404183

Xing Y; Boecking T; Wolf M; Grigorieff N; Kirchhausen T; Harrison SC, 2010, 'Structure of clathrin coat with bound Hsc70 and auxilin: mechanism of Hsc70-facilitated disassembly', European Molecular Biology Organization, vol. 29, pp. 655 - 665, http://dx.doi.org/10.1038/emboj.2009.383

Boecking T; Kilian KA; Reece PJ; Gaus K; Gal M; Gooding JJ, 2010, 'Substrate independent assembly of optical structures guided by biomolecular interactions', ACS Applied Materials & Interfaces, vol. 2, pp. 3270 - 3275, http://dx.doi.org/10.1021/am1007084

Kilian KA; Lai LH; Magenau AI; Cartland SP; Boecking T; Di Girolamo N; Gal M; Gaus K; Gooding JJ, 2009, 'Smart tissue culture: in Situ monitoring of the activity of protease enzymes secreted from live cells using nanostructured photonic crystals', Nano Letters, vol. 9, pp. 2021 - 2025, http://dx.doi.org/10.1021/nl900283j

Kilian KA; Boecking T; Gooding JJ, 2009, 'The importance of surface chemistry in mesoporous materials: Lessons from porous silicon biosensors', Chemical Communications, pp. 630 - 640, http://dx.doi.org/10.1039/b815449j

Rapoport I; Boll W; Yu A; Boecking T; Kirchhausen T, 2008, 'A motif in the clathrin heavy chain required for the Hsc70/auxilin uncoating reaction', Molecular Biology of the Cell, vol. 19, pp. 405 - 413, http://dx.doi.org/10.1091/mbc.E07-09-0870

Ciampi S; Boecking T; Kilian KA; Harper JB; Gooding JJ, 2008, 'Click chemistry in mesoporous materials: Functionalization of porous silicon rugate filters', Langmuir, vol. 24, pp. 5888 - 5892, http://dx.doi.org/10.1021/la800435d

Chou A; Boecking T; Liu R; Singh NK; Moran GM; Gooding JJ, 2008, 'Effect of dialysis on the electrochemical properties of acid-oxidized single-walled carbon nanotubes', Journal of Physical Chemistry C, vol. 112, pp. 14131 - 14138, http://dx.doi.org/10.1021/jp7113785

Chilcott TC; Swong E; Boecking T; Coster HG, 2008, 'Electrical characterizations of biomimetic molecular layers on gold and silicon substrates', Physiological Measurement, vol. 29, pp. S307 - S319, http://dx.doi.org/10.1088/0967-3334/29/6/S26

Kilian KA; Boecking T; Gaus K; Gooding JJ, 2008, 'Introducing distinctly different chemical functionalities onto the internal and external surfaces of mesoporous materials', Angewandte Chemie (International Edition), vol. 47, pp. 2697 - 2699, http://dx.doi.org/10.1002/anie.200704784

Boecking T; Kilian KA; Gaus K; Gooding JJ, 2008, 'Modifying Porous Silicon with Self-Assembled Monolayers for Biomedical Applications: The Influence of Surface Coverage on Stability and Biomolecule Coupling', Advanced Functional Materials, vol. 18, pp. 3827 - 3833, http://dx.doi.org/10.1002/adfm.200800640

Kilian KA; Boecking T; Lai LH; Ilyas S; Gaus K; Gal M; Gooding JJ, 2008, 'Organic modification of mesoporous silicon rugate filters: The influence of nanoarchitecture on optical behaviour', INTERNATIONAL JOURNAL OF NANOTECHNOLOGY, vol. 5, pp. 170 - 178, http://dx.doi.org/10.1504/IJNT.2008.016914

Salomon A; Shpaisman H; Seitz O; Boecking T; Cahen D, 2008, 'Temperature-dependent electronic transport through alkyl chain monolayers: Evidence for a molecular signature', Journal of Physical Chemistry C, vol. 112, pp. 3969 - 3974, http://dx.doi.org/10.1021/0710985b

Chilcott TC; Coster HGL; Böcking T, 2007, 'Organic-silicon interface', Biophysical Reviews and Letters, vol. 2, pp. 191 - 205, http://dx.doi.org/10.1142/S1793048007000489

Liu G; Boecking T; Gooding JJ, 2007, 'Diazonium salts: Stable monolayers on gold electrodes for sensing applications', Journal of Electroanalytical Chemistry, vol. 600, pp. 335 - 344, http://dx.doi.org/10.1016/j.jelechem.2006.09.012

Kilian KA; Ilyas S; Jessup W; Gal M; Gooding JJ; Boecking T; Gaus K, 2007, 'Forming antifouling organic multilayers on porous silicon rugate filters towards in vivo/ex vivo biophotonic devices', Advanced Functional Materials, vol. 17, pp. 2884 - 2890, http://dx.doi.org/10.1002/adfm.200600790

Ciampi S; Boecking T; Kilian KA; James M; Harper JB; Gooding JJ, 2007, 'Functionalization of acetylene-terminated monolayers on Si(100) surfaces: A click chemistry approach', Langmuir, vol. 23, pp. 9320 - 9329, http://dx.doi.org/10.1021/la701035g

Kilian KA; Boecking T; Gaus K; King-Lacroix J; Gal M; Gooding JJ, 2007, 'Hybrid lipid bilayers in nanostructured silicon: a biomimetic mesoporous scaffold for optical detection of cholera toxin', Chemical Communications, pp. 1936 - 1938, http://dx.doi.org/10.1039/b702762a

Kilian KA; Boecking T; Gaus K; Gal M; Gooding JJ, 2007, 'Peptide-modified optical filters for detecting protease activity', ACS NANO, vol. 1, pp. 355 - 361, http://dx.doi.org/10.1021/nn700141n


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