Select Publications

Book Chapters

Kaakoush NO; Mitchell HM; Man SM, 2014, 'Campylobacter', in Molecular Medical Microbiology: Second Edition, pp. 1187 - 1236,

Mitchell HM; Rocha GA; Kaakoush NO; O'Rourke JL; Dulciene MM, 2014, 'The Family Helicobacteraceae', in Rosenberg E; DeLong EF; Lory S; Stackebrandt E; Thompson F (ed.), The Prokaryotes, 4th Edition, Volume 10 Deltaproteobacteria and Epsilonproteobacteria, Springer-Verlag, Berlin Heidelberg, pp. 337 - 392,

Mitchell HM; Kaakoush NO; Sutton P, 2010, 'Extragastric manifestations of Helicobacter pylori infection', in Sutton P; Mitchell H (ed.), Helicobacter pylori in the 21st Century, CABI, Cambridge, MA, pp. 69 - 93,

Journal articles

Fox D; Mathur A; Xue Y; Liu Y; Tan WH; Feng S; Pandey A; Ngo C; Hayward JA; Atmosukarto II; Price JD; Johnson MD; Jessberger N; Robertson AAB; Burgio G; Tscharke DC; Fox EM; Leyton DL; Kaakoush NO; Märtlbauer E; Leppla SH; Man SM, 2020, 'Bacillus cereus non-haemolytic enterotoxin activates the NLRP3 inflammasome', Nature Communications, vol. 11,

Leigh SJ; Kaakoush NO; Bertoldo MJ; Westbrook RF; Morris MJ, 2020, 'Intermittent cafeteria diet identifies fecal microbiome changes as a predictor of spatial recognition memory impairment in female rats', Translational Psychiatry, vol. 10, pp. 36,

Leigh SJ; Kaakoush NO; Westbrook RF; Morris MJ, 2020, 'Minocycline-induced microbiome alterations predict cafeteria diet-induced spatial recognition memory impairments in rats', Translational Psychiatry, vol. 10, pp. 92,

Krishnan U; Singh H; Tedla N; Leach ST; Kaakoush NO, 2020, 'Presence of gastric pepsinogen in the trachea is associated with altered inflammation and microbial composition', Infection and Immunity, vol. 88,

Wasinger VC; Lu K; Yau YY; Nash J; Lee J; Chang J; Paramsothy S; Kaakoush NO; Mitchell HM; Leong RWL, 2020, 'Spp24 is associated with endocytic signalling, lipid metabolism, and discrimination of tissue integrity for ‘leaky-gut’ in inflammatory bowel disease', Scientific Reports, vol. 10,

Britton GJ; Contijoch EJ; Spindler MP; Aggarwala V; Dogan B; Bongers G; Mateo LS; Baltus A; Das A; Gevers D; Borody TJ; Kaakoush NO; Kamm MA; Mitchell H; Paramsothy S; Clemente JC; Colombel JF; Simpson KW; Dubinsky MC; Grinspan A; Faith JJ, 2020, 'Defined microbiota transplant restores Th17/RORγt+ regulatory T cell balance in mice colonized with inflammatory bowel disease microbiotas', Proceedings of the National Academy of Sciences of the United States of America, vol. 117, pp. 21536 - 21545,

Leigh SJ; Kaakoush NO; Escorihuela RM; Westbrook RF; Morris MJ, 2020, 'Treadmill exercise has minimal impact on obesogenic diet-related gut microbiome changes but alters adipose and hypothalamic gene expression in rats', Nutrition and Metabolism, vol. 17, pp. 71,

Kaakoush NO, 2020, 'Fecal transplants as a microbiome-based therapeutic', Current Opinion in Microbiology, vol. 56, pp. 16 - 23,

Kaakoush NO, 2020, 'Sutterella Species, IgA-degrading Bacteria in Ulcerative Colitis', Trends in Microbiology, vol. 28, pp. 519 - 522,

Leonardi I; Paramsothy S; Doron I; Semon A; Kaakoush NO; Clemente JC; Faith JJ; Borody TJ; Mitchell HM; Colombel JF; Kamm MA; Iliev ID, 2020, 'Fungal Trans-kingdom Dynamics Linked to Responsiveness to Fecal Microbiota Transplantation (FMT) Therapy in Ulcerative Colitis', Cell Host and Microbe, vol. 27, pp. 823 - 829.e3,

Castaño-Rodríguez N; Paramsothy S; Kaakoush NO, 2020, 'Promise of Fecal Microbiota Transplantation Therapy in Pouchitis', Digestive Diseases and Sciences, vol. 65, pp. 1107 - 1110,

Ghaly S; Kaakoush NO; Hart PH, 2020, 'Effects of UVR exposure on the gut microbiota of mice and humans', Photochemical and Photobiological Sciences, vol. 19, pp. 20 - 28,

Haifer C; Saikal A; Paramsothy R; Kaakoush NO; Leong RW; Borody TJ; Kamm MA; Paramsothy S, 2020, 'Response to faecal microbiota transplantation in ulcerative colitis is not sustained long term following induction therapy', Gut,

Coffey MJ; Nielsen S; Wemheuer B; Kaakoush NO; Garg M; Needham B; Pickford R; Jaffe A; Thomas T; Ooi CY, 2019, 'Gut Microbiota in Children With Cystic Fibrosis: A Taxonomic and Functional Dysbiosis', Scientific Reports, vol. 9, pp. 18593,

Vinasco K; Mitchell HM; Kaakoush NO; Castaño-Rodríguez N, 2019, 'Microbial carcinogenesis: Lactic acid bacteria in gastric cancer', Biochimica et Biophysica Acta - Reviews on Cancer, vol. 1872, pp. 188309,

Paramsothy S; Kaakoush NO, 2019, 'Reply', Gastroenterology, vol. 157, pp. 1165 - 1166,

Simovic I; Castaño-Rodríguez N; Kaakoush NO, 2019, 'OPCML: A Promising Biomarker and Therapeutic Avenue', Trends in Cancer, vol. 5, pp. 463 - 466,

Pinget G; Tan J; Janac B; Kaakoush NO; Angelatos AS; O’sullivan J; Koay YC; Sierro F; Davis J; Divakarla SK; Khanal D; Moore RJ; Stanley D; Chrzanowski W; Macia L, 2019, 'Corrigendum: Impact of the food additive titanium dioxide (e171) on gut microbiota-host interaction (Front. Nutr., (2019), 6, 10.3389/fnut.2019.00057)', Frontiers in Nutrition, vol. 6,

Pinget G; Tan J; Janac B; Kaakoush NO; Angelatos AS; O'Sullivan J; Koay YC; Sierro F; Davis J; Divakarla SK; Khanal D; Moore RJ; Stanley D; Chrzanowski W; Macia L, 2019, 'Impact of the food additive titanium dioxide (e171) on gut microbiota-host interaction', Frontiers in Nutrition, vol. 6,

Leong RWL; Kaakoush NO; Yau YY; Wasinger VC, 2019, 'Editorial: metabolomic biomarkers for colorectal adenocarcinoma and in the differentiation between irritable bowel syndrome and ulcerative colitis in clinical remission-confounded by the gut microbiome?', Alimentary pharmacology & therapeutics, vol. 49, pp. 1086 - 1087,

Ong KL; Hui N; Januszewski AS; Kaakoush NO; Xu A; Fayyad R; DeMicco DA; Jenkins AJ; Keech AC; Waters DD; Barter PJ; Rye KA, 2019, 'High plasma FGF21 levels predicts major cardiovascular events in patients treated with atorvastatin (from the Treating to New Targets [TNT] Study)', Metabolism: Clinical and Experimental, vol. 93, pp. 93 - 99,

Paramsothy S; Nielsen S; Kamm MA; Deshpande NP; Faith JJ; Clemente JC; Paramsothy R; Walsh AJ; van den Bogaerde J; Samuel D; Leong RWL; Connor S; Ng W; Lin E; Borody TJ; Wilkins MR; Colombel JF; Mitchell HM; Kaakoush NO, 2019, 'Specific Bacteria and Metabolites Associated With Response to Fecal Microbiota Transplantation in Patients With Ulcerative Colitis', Gastroenterology, vol. 156, pp. 1440 - 1454.e2,

Mathur A; Feng S; Hayward JA; Ngo C; Fox D; Atmosukarto II; Price JD; Schauer K; Märtlbauer E; Robertson AAB; Burgio G; Fox EM; Leppla SH; Kaakoush NO; Man SM, 2019, 'A multicomponent toxin from Bacillus cereus incites inflammation and shapes host outcome via the NLRP3 inflammasome', Nature Microbiology, vol. 4, pp. 362 - 374,

Deshpande NP; Riordan SM; Castaño-Rodríguez N; Wilkins MR; Kaakoush NO, 2018, 'Signatures within the esophageal microbiome are associated with host genetics, age, and disease', Microbiome, vol. 6, pp. 227,

Castaño-Rodríguez N; Popple GL; Porras-Hurtado GL; Cardona-Deazza JL; Montoya-Martinez JJ; Cadavid-Velez AJ; Toro-Hidalgo HW; Cobo-Alvarado AR; Del Socorro Hincapié-Rincón O; Riordan SM; Kaakoush NO, 2018, 'OPCML is hypermethylated in a subset of patients with metaplastic changes in their esophagus', Biomarker Research, vol. 6, pp. 35,

Ghaly S; Kaakoush NO; Lloyd F; McGonigle T; Mok D; Baird A; Klopcic B; Gordon L; Gorman S; Forest C; Bouillon R; Lawrance IC; Hart PH, 2018, 'High Dose Vitamin D supplementation alters faecal microbiome and predisposes mice to more severe colitis', Scientific Reports, vol. 8,

Srinivasan SPB; Raipuria M; Bahari H; Kaakoush NO; Morris MJ, 2018, 'Impacts of Diet and Exercise on Maternal Gut Microbiota Are Transferred to Offspring', FRONTIERS IN ENDOCRINOLOGY, vol. 9,

Ghaly S; Kaakoush NO; Lloyd F; Gordon L; Forest C; Lawrance IC; Hart PH, 2018, 'Ultraviolet irradiation of skin alters the faecal microbiome independently of vitamin D in mice', Nutrients, vol. 10,

Castaño-Rodríguez N; Underwood AP; Merif J; Riordan SM; Rawlinson WD; Mitchell HM; Kaakoush NO, 2018, 'Gut microbiome analysis identifies potential etiological factors in acute gastroenteritis', Infection and Immunity, vol. 86,

Kaakoush NO, 2018, 'Microbiome and esophageal adenocarcinoma—letter', Cancer Research, vol. 78, pp. 1574,

Beilharz JE; Kaakoush NO; Maniam J; Morris MJ, 2018, 'Cafeteria diet and probiotic therapy: Cross talk among memory, neuroplasticity, serotonin receptors and gut microbiota in the rat', Molecular Psychiatry, vol. 23, pp. 351 - 361,

Purcell RV; Kaakoush NO; Mitchell HM; Pearson JF; Keenan JI, 2018, 'Gastrointestinal Pathobionts in Pediatric Crohn's Disease Patients', International Journal of Microbiology, vol. 2018,

Castaño-Rodríguez N; Goh KL; Fock KM; Mitchell HM; Kaakoush NO, 2017, 'Dysbiosis of the microbiome in gastric carcinogenesis', Scientific Reports, vol. 7,

Castaño-Rodríguez N; Mitchell HM; Kaakoush NO, 2017, 'NAFLD, Helicobacter species and the intestinal microbiome', Best Practice and Research: Clinical Gastroenterology, vol. 31, pp. 657 - 668,

Paramsothy S; Paramsothy R; Rubin DT; Kamm MA; Kaakoush NO; Mitchell HM; Castaño-Rodríguez N, 2017, 'Faecal microbiota transplantation for inflammatory bowel disease: A systematic review and meta-analysis', Journal of Crohn's and Colitis, vol. 11, pp. 1180 - 1199,

Kaakoush NO; Morris MJ, 2017, 'More Flavor for Flavonoid-Based Interventions?', Trends in Molecular Medicine, vol. 23, pp. 293 - 295,

Kaakoush NO; Lecomte V; Maloney CA; Morris MJ, 2017, 'Cross-talk among metabolic parameters, esophageal microbiota, and host gene expression following chronic exposure to an obesogenic diet', Scientific Reports, vol. 7,

Paramsothy S; Kamm MA; Kaakoush NO; Walsh AJ; van den Bogaerde J; Samuel D; Leong RWL; Connor S; Ng W; Paramsothy R; Xuan W; Lin E; Mitchell HM; Borody TJ, 2017, 'Multidonor intensive faecal microbiota transplantation for active ulcerative colitis: a randomised placebo-controlled trial', The Lancet, vol. 389, pp. 1218 - 1228,

Castanõ-Rodríguez N; Kaakoush NO; Lee WS; Mitchell HM, 2017, 'Dual role of Helicobacter and Campylobacter species in IBD: A systematic review and meta-analysis', Gut, vol. 66, pp. 235 - 249,

Kaakoush NO; Martire SI; Raipuria M; Mitchell HM; Nielsen S; Westbrook RF; Morris MJ, 2017, 'Alternating or continuous exposure to cafeteria diet leads to similar shifts in gut microbiota compared to chow diet', Molecular Nutrition and Food Research, vol. 61,

Beilharz JE; Kaakoush NO; Maniam J; Morris MJ, 2016, 'The effect of short-term exposure to energy-matched diets enriched in fat or sugar on memory, gut microbiota and markers of brain inflammation and plasticity', Brain, Behavior, and Immunity, vol. 57, pp. 304 - 313,

Deshpande NP; Wilkins MR; Castaño-Rodríguez N; Bainbridge E; Sodhi N; Riordan SM; Mitchell HM; Kaakoush NO, 2016, 'Campylobacter concisus pathotypes induce distinct global responses in intestinal epithelial cells', Scientific Reports, vol. 6,

Kaakoush NO; Thomas DS; Ruzayqat MM; Lynch D; Leach ST; Lemberg DA; Day AS; Mitchell HM, 2016, 'Campylobacter concisus utilizes blood but not short chain fatty acids despite showing associations with firmicutes taxa', Microbiology (United Kingdom), vol. 162, pp. 1388 - 1397,

Kaakoush NO; Pickford R; Jaffe A; Ooi CY, 2016, 'Is there a role for stool metabolomics in cystic fibrosis?', Pediatrics International, vol. 58, pp. 808 - 811,

Kaakoush NO; Day AS; Leach ST; Lemberg DA; Mitchell HM, 2016, 'Reduction in Gut Microbial Diversity as a Mechanism of Action of Exclusive Enteral Nutrition', American Journal of Gastroenterology, vol. 111, pp. 1033,

Underwood AP; Kaakoush NO; Sodhi N; Merif J; Lee WS; Riordan SM; Rawlinson WD; Mitchell HM, 2016, 'Campylobacter concisus pathotypes are present at significant levels in patients with gastroenteritis', Journal of Medical Microbiology, vol. 65, pp. 219 - 226,

Nielsen HL; Kaakoush NO; Mitchell HM; Nielsen H, 2016, 'Immunoglobulin G response in patients with Campylobacter concisus diarrhea', Diagnostic Microbiology and Infectious Disease, vol. 84, pp. 151 - 154,

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