Select Publications

Book Chapters

Kaakoush NO; Mitchell HM; Man SM, 2014, 'Campylobacter', in Molecular Medical Microbiology: Second Edition, pp. 1187 - 1236, http://dx.doi.org/10.1016/B978-0-12-397169-2.00067-6

Mitchell HM; Rocha GA; Kaakoush NO; O'Rourke JL; Dulciene MM, 2014, 'The Family Helicobacteraceae', in Rosenberg E; DeLong EF; Lory S; Stackebrandt E; Thompson F (ed.), The Prokaryotes, 4th Edition, Volume 10 Deltaproteobacteria and Epsilonproteobacteria, Springer-Verlag, Berlin Heidelberg, pp. 337 - 392, http://dx.doi.org/10.1007/978-3-642-39044-9_275

Mitchell HM; Kaakoush NO; Sutton P, 2010, 'Extragastric manifestations of Helicobacter pylori infection', in Sutton P; Mitchell H (ed.), Helicobacter pylori in the 21st Century, CABI, Cambridge, MA, pp. 69 - 93, http://dx.doi.org/10.1079/9781845935948.0069

Journal articles

Fox D; Mathur A; Xue Y; Liu Y; Tan WH; Feng S; Pandey A; Ngo C; Hayward JA; Atmosukarto II; Price JD; Johnson MD; Jessberger N; Robertson AAB; Burgio G; Tscharke DC; Fox EM; Leyton DL; Kaakoush NO; Märtlbauer E; Leppla SH; Man SM, 2020, 'Bacillus cereus non-haemolytic enterotoxin activates the NLRP3 inflammasome', Nature Communications, vol. 11, http://dx.doi.org/10.1038/s41467-020-14534-3

Leigh SJ; Kaakoush NO; Bertoldo MJ; Westbrook RF; Morris MJ, 2020, 'Intermittent cafeteria diet identifies fecal microbiome changes as a predictor of spatial recognition memory impairment in female rats', Translational Psychiatry, vol. 10, pp. 36, http://dx.doi.org/10.1038/s41398-020-0734-9

Leigh SJ; Kaakoush NO; Westbrook RF; Morris MJ, 2020, 'Minocycline-induced microbiome alterations predict cafeteria diet-induced spatial recognition memory impairments in rats', Translational Psychiatry, vol. 10, pp. 92, http://dx.doi.org/10.1038/s41398-020-0774-1

Wasinger VC; Lu K; Yau YY; Nash J; Lee J; Chang J; Paramsothy S; Kaakoush NO; Mitchell HM; Leong RWL, 2020, 'Spp24 is associated with endocytic signalling, lipid metabolism, and discrimination of tissue integrity for ‘leaky-gut’ in inflammatory bowel disease', Scientific Reports, vol. 10, http://dx.doi.org/10.1038/s41598-020-69746-w

Krishnan U; Singh H; Tedla N; Leach ST; Kaakoush NO, 2020, 'Presence of gastric pepsinogen in the trachea is associated with altered inflammation and microbial composition.', Infect Immun, http://dx.doi.org/10.1128/IAI.00455-20

Britton GJ; Contijoch EJ; Spindler MP; Aggarwala V; Dogan B; Bongers G; Mateo LS; Baltus A; Das A; Gevers D; Borody TJ; Kaakoush NO; Kamm MA; Mitchell H; Paramsothy S; Clemente JC; Colombel JF; Simpson KW; Dubinsky MC; Grinspan A; Faith JJ, 2020, 'Defined microbiota transplant restores Th17/RORγt+ regulatory T cell balance in mice colonized with inflammatory bowel disease microbiotas', Proceedings of the National Academy of Sciences of the United States of America, vol. 117, pp. 21536 - 21545, http://dx.doi.org/10.1073/pnas.1922189117

Leigh SJ; Kaakoush NO; Escorihuela RM; Westbrook RF; Morris MJ, 2020, 'Treadmill exercise has minimal impact on obesogenic diet-related gut microbiome changes but alters adipose and hypothalamic gene expression in rats', Nutrition and Metabolism, vol. 17, pp. 71, http://dx.doi.org/10.1186/s12986-020-00492-6

Kaakoush NO, 2020, 'Fecal transplants as a microbiome-based therapeutic', Current Opinion in Microbiology, vol. 56, pp. 16 - 23, http://dx.doi.org/10.1016/j.mib.2020.05.008

Kaakoush NO, 2020, 'Sutterella Species, IgA-degrading Bacteria in Ulcerative Colitis', Trends in Microbiology, vol. 28, pp. 519 - 522, http://dx.doi.org/10.1016/j.tim.2020.02.018

Leonardi I; Paramsothy S; Doron I; Semon A; Kaakoush NO; Clemente JC; Faith JJ; Borody TJ; Mitchell HM; Colombel JF; Kamm MA; Iliev ID, 2020, 'Fungal Trans-kingdom Dynamics Linked to Responsiveness to Fecal Microbiota Transplantation (FMT) Therapy in Ulcerative Colitis', Cell Host and Microbe, vol. 27, pp. 823 - 829.e3, http://dx.doi.org/10.1016/j.chom.2020.03.006

Castaño-Rodríguez N; Paramsothy S; Kaakoush NO, 2020, 'Promise of Fecal Microbiota Transplantation Therapy in Pouchitis', Digestive Diseases and Sciences, vol. 65, pp. 1107 - 1110, http://dx.doi.org/10.1007/s10620-019-05831-z

Ghaly S; Kaakoush NO; Hart PH, 2020, 'Effects of UVR exposure on the gut microbiota of mice and humans', Photochemical and Photobiological Sciences, vol. 19, pp. 20 - 28, http://dx.doi.org/10.1039/c9pp00443b

Coffey MJ; Nielsen S; Wemheuer B; Kaakoush NO; Garg M; Needham B; Pickford R; Jaffe A; Thomas T; Ooi CY, 2019, 'Gut Microbiota in Children With Cystic Fibrosis: A Taxonomic and Functional Dysbiosis', Scientific Reports, vol. 9, pp. 18593, http://dx.doi.org/10.1038/s41598-019-55028-7

Vinasco K; Mitchell HM; Kaakoush NO; Castaño-Rodríguez N, 2019, 'Microbial carcinogenesis: Lactic acid bacteria in gastric cancer', Biochimica et Biophysica Acta - Reviews on Cancer, vol. 1872, pp. 188309, http://dx.doi.org/10.1016/j.bbcan.2019.07.004

Paramsothy S; Kaakoush NO, 2019, 'Reply', Gastroenterology, vol. 157, pp. 1165 - 1166, http://dx.doi.org/10.1053/j.gastro.2019.08.005

Simovic I; Castaño-Rodríguez N; Kaakoush NO, 2019, 'OPCML: A Promising Biomarker and Therapeutic Avenue', Trends in Cancer, vol. 5, pp. 463 - 466, http://dx.doi.org/10.1016/j.trecan.2019.06.002

Pinget G; Tan J; Janac B; Kaakoush NO; Angelatos AS; O’sullivan J; Koay YC; Sierro F; Davis J; Divakarla SK; Khanal D; Moore RJ; Stanley D; Chrzanowski W; Macia L, 2019, 'Corrigendum: Impact of the food additive titanium dioxide (e171) on gut microbiota-host interaction (Front. Nutr., (2019), 6, 10.3389/fnut.2019.00057)', Frontiers in Nutrition, vol. 6, http://dx.doi.org/10.3389/fnut.2019.00100

Pinget G; Tan J; Janac B; Kaakoush NO; Angelatos AS; O'Sullivan J; Koay YC; Sierro F; Davis J; Divakarla SK; Khanal D; Moore RJ; Stanley D; Chrzanowski W; Macia L, 2019, 'Impact of the food additive titanium dioxide (e171) on gut microbiota-host interaction', Frontiers in Nutrition, vol. 6, http://dx.doi.org/10.3389/fnut.2019.00057

Leong RWL; Kaakoush NO; Yau YY; Wasinger VC, 2019, 'Editorial: metabolomic biomarkers for colorectal adenocarcinoma and in the differentiation between irritable bowel syndrome and ulcerative colitis in clinical remission-confounded by the gut microbiome?', Alimentary pharmacology & therapeutics, vol. 49, pp. 1086 - 1087, http://dx.doi.org/10.1111/apt.15171

Ong KL; Hui N; Januszewski AS; Kaakoush NO; Xu A; Fayyad R; DeMicco DA; Jenkins AJ; Keech AC; Waters DD; Barter PJ; Rye KA, 2019, 'High plasma FGF21 levels predicts major cardiovascular events in patients treated with atorvastatin (from the Treating to New Targets [TNT] Study)', Metabolism: Clinical and Experimental, vol. 93, pp. 93 - 99, http://dx.doi.org/10.1016/j.metabol.2018.11.006

Paramsothy S; Nielsen S; Kamm MA; Deshpande NP; Faith JJ; Clemente JC; Paramsothy R; Walsh AJ; van den Bogaerde J; Samuel D; Leong RWL; Connor S; Ng W; Lin E; Borody TJ; Wilkins MR; Colombel JF; Mitchell HM; Kaakoush NO, 2019, 'Specific Bacteria and Metabolites Associated With Response to Fecal Microbiota Transplantation in Patients With Ulcerative Colitis', Gastroenterology, vol. 156, pp. 1440 - 1454.e2, http://dx.doi.org/10.1053/j.gastro.2018.12.001

Mathur A; Feng S; Hayward JA; Ngo C; Fox D; Atmosukarto II; Price JD; Schauer K; Märtlbauer E; Robertson AAB; Burgio G; Fox EM; Leppla SH; Kaakoush NO; Man SM, 2019, 'A multicomponent toxin from Bacillus cereus incites inflammation and shapes host outcome via the NLRP3 inflammasome', Nature Microbiology, vol. 4, pp. 362 - 374, http://dx.doi.org/10.1038/s41564-018-0318-0

Deshpande NP; Riordan SM; Castaño-Rodríguez N; Wilkins MR; Kaakoush NO, 2018, 'Signatures within the esophageal microbiome are associated with host genetics, age, and disease', Microbiome, vol. 6, pp. 227, http://dx.doi.org/10.1186/s40168-018-0611-4

Castaño-Rodríguez N; Popple GL; Porras-Hurtado GL; Cardona-Deazza JL; Montoya-Martinez JJ; Cadavid-Velez AJ; Toro-Hidalgo HW; Cobo-Alvarado AR; Del Socorro Hincapié-Rincón O; Riordan SM; Kaakoush NO, 2018, 'OPCML is hypermethylated in a subset of patients with metaplastic changes in their esophagus', Biomarker Research, vol. 6, pp. 35, http://dx.doi.org/10.1186/s40364-018-0150-y

Ghaly S; Kaakoush NO; Lloyd F; McGonigle T; Mok D; Baird A; Klopcic B; Gordon L; Gorman S; Forest C; Bouillon R; Lawrance IC; Hart PH, 2018, 'High Dose Vitamin D supplementation alters faecal microbiome and predisposes mice to more severe colitis', Scientific Reports, vol. 8, http://dx.doi.org/10.1038/s41598-018-29759-y

Srinivasan SPB; Raipuria M; Bahari H; Kaakoush NO; Morris MJ, 2018, 'Impacts of Diet and Exercise on Maternal Gut Microbiota Are Transferred to Offspring', FRONTIERS IN ENDOCRINOLOGY, vol. 9, http://dx.doi.org/10.3389/fendo.2018.00716

Ghaly S; Kaakoush NO; Lloyd F; Gordon L; Forest C; Lawrance IC; Hart PH, 2018, 'Ultraviolet irradiation of skin alters the faecal microbiome independently of vitamin D in mice', Nutrients, vol. 10, http://dx.doi.org/10.3390/nu10081069

Castaño-Rodríguez N; Underwood AP; Merif J; Riordan SM; Rawlinson WD; Mitchell HM; Kaakoush NO, 2018, 'Gut microbiome analysis identifies potential etiological factors in acute gastroenteritis', Infection and Immunity, vol. 86, http://dx.doi.org/10.1128/IAI.00060-18

Kaakoush NO, 2018, 'Microbiome and esophageal adenocarcinoma—letter', Cancer Research, vol. 78, pp. 1574, http://dx.doi.org/10.1158/0008-5472.CAN-17-3791

Beilharz JE; Kaakoush NO; Maniam J; Morris MJ, 2018, 'Cafeteria diet and probiotic therapy: Cross talk among memory, neuroplasticity, serotonin receptors and gut microbiota in the rat', Molecular Psychiatry, vol. 23, pp. 351 - 361, http://dx.doi.org/10.1038/mp.2017.38

Purcell RV; Kaakoush NO; Mitchell HM; Pearson JF; Keenan JI, 2018, 'Gastrointestinal Pathobionts in Pediatric Crohn's Disease Patients', International Journal of Microbiology, vol. 2018, http://dx.doi.org/10.1155/2018/9203908

Castaño-Rodríguez N; Goh KL; Fock KM; Mitchell HM; Kaakoush NO, 2017, 'Dysbiosis of the microbiome in gastric carcinogenesis', Scientific Reports, vol. 7, http://dx.doi.org/10.1038/s41598-017-16289-2

Castaño-Rodríguez N; Mitchell HM; Kaakoush NO, 2017, 'NAFLD, Helicobacter species and the intestinal microbiome', Best Practice and Research: Clinical Gastroenterology, vol. 31, pp. 657 - 668, http://dx.doi.org/10.1016/j.bpg.2017.09.008

Paramsothy S; Paramsothy R; Rubin DT; Kamm MA; Kaakoush NO; Mitchell HM; Castaño-Rodríguez N, 2017, 'Faecal microbiota transplantation for inflammatory bowel disease: A systematic review and meta-analysis', Journal of Crohn's and Colitis, vol. 11, pp. 1180 - 1199, http://dx.doi.org/10.1093/ecco-jcc/jjx063

Kaakoush NO; Morris MJ, 2017, 'More Flavor for Flavonoid-Based Interventions?', Trends in Molecular Medicine, vol. 23, pp. 293 - 295, http://dx.doi.org/10.1016/j.molmed.2017.02.008

Kaakoush NO; Lecomte V; Maloney CA; Morris MJ, 2017, 'Cross-talk among metabolic parameters, esophageal microbiota, and host gene expression following chronic exposure to an obesogenic diet', Scientific Reports, vol. 7, http://dx.doi.org/10.1038/srep45753

Paramsothy S; Kamm MA; Kaakoush NO; Walsh AJ; van den Bogaerde J; Samuel D; Leong RWL; Connor S; Ng W; Paramsothy R; Xuan W; Lin E; Mitchell HM; Borody TJ, 2017, 'Multidonor intensive faecal microbiota transplantation for active ulcerative colitis: a randomised placebo-controlled trial', The Lancet, vol. 389, pp. 1218 - 1228, http://dx.doi.org/10.1016/S0140-6736(17)30182-4

Castanõ-Rodríguez N; Kaakoush NO; Lee WS; Mitchell HM, 2017, 'Dual role of Helicobacter and Campylobacter species in IBD: A systematic review and meta-analysis', Gut, vol. 66, pp. 235 - 249, http://dx.doi.org/10.1136/gutjnl-2015-310545

Kaakoush NO; Martire SI; Raipuria M; Mitchell HM; Nielsen S; Westbrook RF; Morris MJ, 2017, 'Alternating or continuous exposure to cafeteria diet leads to similar shifts in gut microbiota compared to chow diet', Molecular Nutrition and Food Research, vol. 61, http://dx.doi.org/10.1002/mnfr.201500815

Beilharz JE; Kaakoush NO; Maniam J; Morris MJ, 2016, 'The effect of short-term exposure to energy-matched diets enriched in fat or sugar on memory, gut microbiota and markers of brain inflammation and plasticity', Brain, Behavior, and Immunity, vol. 57, pp. 304 - 313, http://dx.doi.org/10.1016/j.bbi.2016.07.151

Deshpande NP; Wilkins MR; Castaño-Rodríguez N; Bainbridge E; Sodhi N; Riordan SM; Mitchell HM; Kaakoush NO, 2016, 'Campylobacter concisus pathotypes induce distinct global responses in intestinal epithelial cells', Scientific Reports, vol. 6, http://dx.doi.org/10.1038/srep34288

Kaakoush NO; Thomas DS; Ruzayqat MM; Lynch D; Leach ST; Lemberg DA; Day AS; Mitchell HM, 2016, 'Campylobacter concisus utilizes blood but not short chain fatty acids despite showing associations with firmicutes taxa', Microbiology (United Kingdom), vol. 162, pp. 1388 - 1397, http://dx.doi.org/10.1099/mic.0.000328

Kaakoush NO; Pickford R; Jaffe A; Ooi CY, 2016, 'Is there a role for stool metabolomics in cystic fibrosis?', Pediatrics International, vol. 58, pp. 808 - 811, http://dx.doi.org/10.1111/ped.13063

Kaakoush NO; Day AS; Leach ST; Lemberg DA; Mitchell HM, 2016, 'Reduction in Gut Microbial Diversity as a Mechanism of Action of Exclusive Enteral Nutrition', American Journal of Gastroenterology, vol. 111, pp. 1033, http://dx.doi.org/10.1038/ajg.2016.61

Underwood AP; Kaakoush NO; Sodhi N; Merif J; Lee WS; Riordan SM; Rawlinson WD; Mitchell HM, 2016, 'Campylobacter concisus pathotypes are present at significant levels in patients with gastroenteritis', Journal of Medical Microbiology, vol. 65, pp. 219 - 226, http://dx.doi.org/10.1099/jmm.0.000216

Nielsen HL; Kaakoush NO; Mitchell HM; Nielsen H, 2016, 'Immunoglobulin G response in patients with Campylobacter concisus diarrhea', Diagnostic Microbiology and Infectious Disease, vol. 84, pp. 151 - 154, http://dx.doi.org/10.1016/j.diagmicrobio.2015.10.026

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