Select Publications

Book Chapters

Song Y; Cai W, 2017, 'Handling of feature space complexity for texture analysis in medical images', in Biomedical Texture Analysis: Fundamentals, Tools and Challenges, pp. 163 - 191, http://dx.doi.org/10.1016/B978-0-12-812133-7.00006-5

Journal articles

Wu Y; Xia Y; Song Y; Zhang Y; Cai W, 2020, 'NFN+: A novel network followed network for retinal vessel segmentation', Neural Networks, vol. 126, pp. 153 - 162, http://dx.doi.org/10.1016/j.neunet.2020.02.018

Jia H; Xia Y; Song Y; Zhang D; Huang H; Zhang Y; Cai W, 2020, '3D APA-Net: 3D Adversarial Pyramid Anisotropic Convolutional Network for Prostate Segmentation in MR Images', IEEE Transactions on Medical Imaging, vol. 39, pp. 447 - 457, http://dx.doi.org/10.1109/TMI.2019.2928056

Khanal D; Zhang F; Song Y; Hau H; Gautam A; Yamaguchi S; Uertz J; Mills S; Kondyurin A; Knowles JC; Georgiou G; Ramzan I; Cai W; Ng KW; Chrzanowski W, 2019, 'Biological impact of nanodiamond particles–label free, high-resolution methods for nanotoxicity assessment', Nanotoxicology, vol. 13, pp. 1210 - 1226, http://dx.doi.org/10.1080/17435390.2019.1650970

Xie Y; Xia Y; Zhang J; Song Y; Feng D; Fulham M; Cai W, 2019, 'Knowledge-based Collaborative Deep Learning for Benign-Malignant Lung Nodule Classification on Chest CT', IEEE Transactions on Medical Imaging, vol. 38, pp. 991 - 1004, http://dx.doi.org/10.1109/TMI.2018.2876510

Liu S; Zhang D; Song Y; Peng H; Cai W, 2018, 'Automated 3-D Neuron Tracing with Precise Branch Erasing and Confidence Controlled Back Tracking', IEEE Transactions on Medical Imaging, vol. 37, pp. 2441 - 2452, http://dx.doi.org/10.1109/TMI.2018.2833420

Pan Y; Xia Y; Song Y; Cai W, 2018, 'Locality constrained encoding of frequency and spatial information for image classification', Multimedia Tools and Applications, vol. 77, pp. 24891 - 24907, http://dx.doi.org/10.1007/s11042-018-5712-3

Tareef A; Song Y; Huang H; Feng D; Chen M; Wang Y; Cai W, 2018, 'Multi-Pass Fast Watershed for Accurate Segmentation of Overlapping Cervical Cells', IEEE Transactions on Medical Imaging, vol. 37, pp. 2044 - 2059, http://dx.doi.org/10.1109/TMI.2018.2815013

Meng F; Shan D; Shi R; Song Y; Guo B; Cai W, 2018, 'Merged region based image retrieval', Journal of Visual Communication and Image Representation, vol. 55, pp. 572 - 585, http://dx.doi.org/10.1016/j.jvcir.2018.07.003

Zhang F; Savadjiev P; Cai W; Song Y; Rathi Y; Tunç B; Parker D; Kapur T; Schultz RT; Makris N; Verma R; O'Donnell LJ, 2018, 'Whole brain white matter connectivity analysis using machine learning: An application to autism', NeuroImage, vol. 172, pp. 826 - 837, http://dx.doi.org/10.1016/j.neuroimage.2017.10.029

Zhang F; Wu W; Ning L; McAnulty G; Waber D; Gagoski B; Sarill K; Hamoda HM; Song Y; Cai W; Rathi Y; O'Donnell LJ, 2018, 'Suprathreshold fiber cluster statistics: Leveraging white matter geometry to enhance tractography statistical analysis', NeuroImage, vol. 171, pp. 341 - 354, http://dx.doi.org/10.1016/j.neuroimage.2018.01.006

Zhang D; Liu S; Song Y; Feng D; Peng H; Cai W, 2018, 'Automated 3D Soma Segmentation with Morphological Surface Evolution for Neuron Reconstruction', Neuroinformatics, vol. 16, pp. 153 - 166, http://dx.doi.org/10.1007/s12021-017-9353-x

Jia H; Xia Y; Song Y; Cai W; Fulham M; Feng DD, 2018, 'Atlas registration and ensemble deep convolutional neural network-based prostate segmentation using magnetic resonance imaging', Neurocomputing, vol. 275, pp. 1358 - 1369, http://dx.doi.org/10.1016/j.neucom.2017.09.084

Song Y; Li Q; Huang H; Feng D; Chen M; Cai W, 2017, 'Low Dimensional Representation of Fisher Vectors for Microscopy Image Classification', IEEE Transactions on Medical Imaging, vol. 36, pp. 1636 - 1649, http://dx.doi.org/10.1109/TMI.2017.2687466

Tareef A; Song Y; Huang H; Wang Y; Feng D; Chen M; Cai W, 2017, 'Optimizing the cervix cytological examination based on deep learning and dynamic shape modeling', Neurocomputing, vol. 248, pp. 28 - 40, http://dx.doi.org/10.1016/j.neucom.2017.01.093

Song Y; Li Q; Zhang F; Huang H; Feng D; Wang Y; Chen M; Cai W, 2017, 'Dual discriminative local coding for tissue aging analysis', Medical Image Analysis, vol. 38, pp. 65 - 76, http://dx.doi.org/10.1016/j.media.2016.10.001

Tareef A; Song Y; Cai W; Huang H; Chang H; Wang Y; Fulham M; Feng D; Chen M, 2017, 'Automatic segmentation of overlapping cervical smear cells based on local distinctive features and guided shape deformation', Neurocomputing, vol. 221, pp. 94 - 107, http://dx.doi.org/10.1016/j.neucom.2016.09.070

Meng F; Shi R; Shan D; Song Y; He W; Cai W, 2017, 'Multi-sensor image fusion based on regional characteristics', International Journal of Distributed Sensor Networks, vol. 13, http://dx.doi.org/10.1177/1550147717741105

Song Y; Li Q; Feng D; Zou JJ; Cai W, 2016, 'Texture image classification with discriminative neural networks', Computational Visual Media, vol. 2, pp. 367 - 377, http://dx.doi.org/10.1007/s41095-016-0060-6

Song Y; Cai W; Huang H; Feng D; Wang Y; Chen M, 2016, 'Bioimage classification with subcategory discriminant transform of high dimensional visual descriptors', BMC Bioinformatics, vol. 17, http://dx.doi.org/10.1186/s12859-016-1318-9

Zhang F; Song Y; Cai W; Liu S; Liu S; Pujol S; Kikinis R; Xia Y; Fulham MJ; Feng DD, 2016, 'Pairwise Latent Semantic Association for Similarity Computation in Medical Imaging', IEEE Transactions on Biomedical Engineering, vol. 63, pp. 1058 - 1069, http://dx.doi.org/10.1109/TBME.2015.2478028

Zhang F; Song Y; Cai W; Hauptmann AG; Liu S; Pujol S; Kikinis R; Fulham MJ; Feng DD; Chen M, 2016, 'Dictionary pruning with visual word significance for medical image retrieval', Neurocomputing, vol. 177, pp. 75 - 88, http://dx.doi.org/10.1016/j.neucom.2015.11.008

Yang MY; Verschuer J; Shi Y; Song Y; Katsifis A; Eberl S; Wong K; Brannan JD; Cai W; Finlay WH; Chan HK, 2016, 'The effect of device resistance and inhalation flow rate on the lung deposition of orally inhaled mannitol dry powder', International Journal of Pharmaceutics, vol. 513, pp. 294 - 301, http://dx.doi.org/10.1016/j.ijpharm.2016.09.047

Song Y; Cai W; Huang H; Zhou Y; Feng DD; Wang Y; Fulham MJ; Chen M, 2015, 'Large margin local estimate with applications to medical image classification', IEEE Transactions on Medical Imaging, vol. 34, pp. 1362 - 1377, http://dx.doi.org/10.1109/TMI.2015.2393954

Song Y; Cai W; Huang H; Zhou Y; Wang Y; Feng DD, 2015, 'Locality-constrained Subcluster Representation Ensemble for lung image classification', Medical Image Analysis, vol. 22, pp. 102 - 113, http://dx.doi.org/10.1016/j.media.2015.03.003

Song Y; Cai W; Huang H; Wang X; Zhou Y; Fulham MJ; Feng DD, 2014, 'Lesion detection and characterization with context driven approximation in thoracic FDG PET-CT images of NSCLC studies', IEEE Transactions on Medical Imaging, vol. 33, pp. 408 - 421, http://dx.doi.org/10.1109/TMI.2013.2285931

Zhang F; Song Y; Cai W; Lee MZ; Zhou Y; Huang H; Shan S; Fulham MJ; Feng DD, 2014, 'Lung nodule classification with multilevel patch-based context analysis', IEEE Transactions on Biomedical Engineering, vol. 61, pp. 1155 - 1166, http://dx.doi.org/10.1109/TBME.2013.2295593

Song Y; Cail W; Huang H; Zhou Y; Feng DDA; Chen M, 2014, 'Large margin aggregation of local estimates for medical image classification', Medical image computing and computer-assisted intervention : MICCAI ... International Conference on Medical Image Computing and Computer-Assisted Intervention, vol. 17, pp. 196 - 203

Song Y; Cai W; Huang H; Wang Y; Feng DD; Chen M, 2013, 'Region-based progressive localization of cell nuclei in microscopic images with data adaptive modeling', BMC Bioinformatics, vol. 14, http://dx.doi.org/10.1186/1471-2105-14-173

Song Y; Cai W; Zhou Y; Feng DD, 2013, 'Feature-based image patch approximation for lung tissue classification', IEEE Transactions on Medical Imaging, vol. 32, pp. 797 - 808, http://dx.doi.org/10.1109/TMI.2013.2241448

Song Y; Cai W; Kim J; Feng DD, 2012, 'A multistage discriminative model for tumor and lymph node detection in thoracic images', IEEE Transactions on Medical Imaging, vol. 31, pp. 1061 - 1075, http://dx.doi.org/10.1109/TMI.2012.2185057

Conference Papers

Zhang D; Song Y; Liu D; Zhang C; Wu Y; Wang H; Zhang F; Xia Y; O’Donnell LJ; Cai W, 2019, 'Efficient 3D Depthwise and Separable Convolutions with Dilation for Brain Tumor Segmentation', in Lecture Notes in Computer Science (including subseries Lecture Notes in Artificial Intelligence and Lecture Notes in Bioinformatics), Adelaide, SA, Australia, pp. 563 - 573, presented at AI 2019 Advances in Artificial Intelligence, Adelaide, SA, Australia, 02 December 2019, http://dx.doi.org/10.1007/978-3-030-35288-2_45

Ke J; Deng J; Lu Y; Wang D; Song Y; Zhang H, 2019, 'Assessment and Elimination of Inflammatory Cell: A Machine Learning Approach in Digital Cytology', in 2019 Digital Image Computing: Techniques and Applications, DICTA 2019, http://dx.doi.org/10.1109/DICTA47822.2019.8946065

Wu Y; Xia Y; Song Y; Zhang D; Liu D; Zhang C; Cai W, 2019, 'Vessel-Net: Retinal vessel segmentation under multi-path supervision', in Lecture Notes in Computer Science (including subseries Lecture Notes in Artificial Intelligence and Lecture Notes in Bioinformatics), Shenzhen, China, pp. 264 - 272, presented at MICCAI 2019 - 22nd international conference, Shenzhen, China, October 13-17, 2019, Shenzhen, China, 13 October 2019 - 17 October 2019, http://dx.doi.org/10.1007/978-3-030-32239-7_30

Jia H; Song Y; Huang H; Cai W; Xia Y, 2019, 'HD-Net: Hybrid Discriminative Network for Prostate Segmentation in MR Images', in Lecture Notes in Computer Science (including subseries Lecture Notes in Artificial Intelligence and Lecture Notes in Bioinformatics), Shenzhen, China, pp. 110 - 118, presented at International Conference on Medical Image Computing and Computer-Assisted Intervention MICCAI 2019, Shenzhen, China, 13 October 2019, http://dx.doi.org/10.1007/978-3-030-32245-8_13

Chu SW; Song Y; Zouo JJ; Cai W, 2019, 'Human Pose Estimation Using Deep Convolutional Densenet Hourglass Network with Intermediate Points Voting', in Proceedings - International Conference on Image Processing, ICIP, pp. 594 - 598, http://dx.doi.org/10.1109/ICIP.2019.8803789

Liu D; Zhang D; Song Y; Zhang C; Zhang F; O'Donnell L; Cai W, 2019, 'Nuclei segmentation via a deep panoptic model with semantic feature fusion', in IJCAI International Joint Conference on Artificial Intelligence, Macao, China, pp. 861 - 868, presented at 28th International Joint Conference on Artificial Intelligence - IJCAI-19 – August 10-16 2019, Macao, China, Macao, China, 10 August 2019 - 16 August 2019, http://dx.doi.org/10.24963/ijcai.2019/121

Wang H; Zhang D; Song Y; Liu S; Huang H; Chen M; Peng H; Cai W, 2019, 'Multiscale kernels for enhanced u-shaped network to improve 3D neuron tracing', in IEEE Computer Society Conference on Computer Vision and Pattern Recognition Workshops, pp. 1105 - 1113, http://dx.doi.org/10.1109/CVPRW.2019.00144

Dodballapur V; Song Y; Huang H; Chen M; Chrzanowski W; Cai W, 2019, 'Mask-driven mitosis detection in histopathology images', in Proceedings - International Symposium on Biomedical Imaging, pp. 1855 - 1859, http://dx.doi.org/10.1109/ISBI.2019.8759164

Wang H; Zhang D; Song Y; Liu S; Wang Y; Feng D; Peng H; Cai W, 2019, 'Segmenting neuronal structure in 3d optical microscope images via knowledge distillation with teacher-student network', in Proceedings - International Symposium on Biomedical Imaging, pp. 228 - 231, http://dx.doi.org/10.1109/ISBI.2019.8759326

Wang H; Zhang D; Song Y; Liu S; Gao R; Peng H; Cai W, 2019, 'Memory and Time Efficient 3D Neuron Morphology Tracing in Large-Scale Images', in 2018 International Conference on Digital Image Computing: Techniques and Applications, DICTA 2018, http://dx.doi.org/10.1109/DICTA.2018.8615765

Zhang C; Song Y; Liu S; Lill S; Wang C; Tang Z; You Y; Gao Y; Klistorner A; Barnett M; Cai W, 2019, 'MS-GAN: GAN-Based Semantic Segmentation of Multiple Sclerosis Lesions in Brain Magnetic Resonance Imaging', in 2018 International Conference on Digital Image Computing: Techniques and Applications, DICTA 2018, http://dx.doi.org/10.1109/DICTA.2018.8615771

Liu D; Zhang D; Song Y; Zhang C; Huang H; Chen M; Cai W, 2018, 'Large kernel refine fusion net for neuron membrane segmentation', in IEEE Computer Society Conference on Computer Vision and Pattern Recognition Workshops, pp. 2293 - 2301, http://dx.doi.org/10.1109/CVPRW.2018.00297

Liu D; Zhang D; Liu S; Song Y; Jia H; Feng D; Xia Y; Cai W, 2018, 'Densely connected large kernel convolutional network for semantic membrane segmentation in microscopy images', in Proceedings - International Conference on Image Processing, ICIP, pp. 2461 - 2465, http://dx.doi.org/10.1109/ICIP.2018.8451775

Zhang C; Song Y; Zhang D; Liu S; Chen M; Cai W, 2018, 'Whole Slide Image Classification via Iterative Patch Labelling', in Proceedings - International Conference on Image Processing, ICIP, pp. 1408 - 1412, http://dx.doi.org/10.1109/ICIP.2018.8451551

Song Y; Chang H; Gao Y; Liu S; Zhang D; Yao J; Chrzanowski W; Cai W, 2018, 'Feature learning with component selective encoding for histopathology image classification', in Proceedings - International Symposium on Biomedical Imaging, pp. 257 - 260, http://dx.doi.org/10.1109/ISBI.2018.8363568

Zhang D; Song Y; Liu S; Feng D; Wang Y; Cai W, 2018, 'Nuclei instance segmentation with dual contour-enhanced adversarial network', in Proceedings - International Symposium on Biomedical Imaging, pp. 409 - 412, http://dx.doi.org/10.1109/ISBI.2018.8363604

Liu D; Zhang D; Song Y; Zhang F; O’Donnell LJ; Cai W, 2018, '3D Large Kernel Anisotropic Network for Brain Tumor Segmentation', in Lecture Notes in Computer Science (including subseries Lecture Notes in Artificial Intelligence and Lecture Notes in Bioinformatics), pp. 444 - 454, http://dx.doi.org/10.1007/978-3-030-04239-4_40

Huang Z; Ding C; Zhang L; Lee MZ; Song Y; Selvadurai H; Feng D; Zhang Y; Cai W, 2018, 'Automated Analysis of Chest Radiographs for Cystic Fibrosis Scoring', in Lecture Notes in Computer Science (including subseries Lecture Notes in Artificial Intelligence and Lecture Notes in Bioinformatics), pp. 227 - 236, http://dx.doi.org/10.1007/978-3-030-00563-4_22

Wu Y; Xia Y; Song Y; Zhang Y; Cai W, 2018, 'Multiscale network followed network model for retinal vessel segmentation', in Lecture Notes in Computer Science (including subseries Lecture Notes in Artificial Intelligence and Lecture Notes in Bioinformatics), pp. 119 - 126, http://dx.doi.org/10.1007/978-3-030-00934-2_14


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