Select Publications

Conference Papers

Tang Z; Zhang D; Song Y; Wang H; Liu D; Zhang C; Liu S; Peng H; Cai W, 2020, '3D Conditional Adversarial Learning for Synthesizing Microscopic Neuron Image Using Skeleton-to-Neuron Translation', in Proceedings - International Symposium on Biomedical Imaging, pp. 1775 - 1779, http://dx.doi.org/10.1109/ISBI45749.2020.9098345

Zhang D; Song Y; Liu D; Zhang C; Wu Y; Wang H; Zhang F; Xia Y; O’Donnell LJ; Cai W, 2019, 'Efficient 3D Depthwise and Separable Convolutions with Dilation for Brain Tumor Segmentation', in Lecture Notes in Computer Science (including subseries Lecture Notes in Artificial Intelligence and Lecture Notes in Bioinformatics), Adelaide, SA, Australia, pp. 563 - 573, presented at AI 2019 Advances in Artificial Intelligence, Adelaide, SA, Australia, 02 December 2019, http://dx.doi.org/10.1007/978-3-030-35288-2_45

Ke J; Deng J; Lu Y; Wang D; Song Y; Zhang H, 2019, 'Assessment and Elimination of Inflammatory Cell: A Machine Learning Approach in Digital Cytology', in 2019 Digital Image Computing: Techniques and Applications, DICTA 2019, http://dx.doi.org/10.1109/DICTA47822.2019.8946065

Wu Y; Xia Y; Song Y; Zhang D; Liu D; Zhang C; Cai W, 2019, 'Vessel-Net: Retinal vessel segmentation under multi-path supervision', in Lecture Notes in Computer Science (including subseries Lecture Notes in Artificial Intelligence and Lecture Notes in Bioinformatics), Shenzhen, China, pp. 264 - 272, presented at MICCAI 2019 - 22nd international conference, Shenzhen, China, October 13-17, 2019, Shenzhen, China, 13 October 2019 - 17 October 2019, http://dx.doi.org/10.1007/978-3-030-32239-7_30

Jia H; Song Y; Huang H; Cai W; Xia Y, 2019, 'HD-Net: Hybrid Discriminative Network for Prostate Segmentation in MR Images', in Lecture Notes in Computer Science (including subseries Lecture Notes in Artificial Intelligence and Lecture Notes in Bioinformatics), Shenzhen, China, pp. 110 - 118, presented at International Conference on Medical Image Computing and Computer-Assisted Intervention MICCAI 2019, Shenzhen, China, 13 October 2019, http://dx.doi.org/10.1007/978-3-030-32245-8_13

Chu SW; Song Y; Zouo JJ; Cai W, 2019, 'Human Pose Estimation Using Deep Convolutional Densenet Hourglass Network with Intermediate Points Voting', in Proceedings - International Conference on Image Processing, ICIP, pp. 594 - 598, http://dx.doi.org/10.1109/ICIP.2019.8803789

Liu D; Zhang D; Song Y; Zhang C; Zhang F; O'Donnell L; Cai W, 2019, 'Nuclei segmentation via a deep panoptic model with semantic feature fusion', in IJCAI International Joint Conference on Artificial Intelligence, Macao, China, pp. 861 - 868, presented at 28th International Joint Conference on Artificial Intelligence - IJCAI-19 – August 10-16 2019, Macao, China, Macao, China, 10 August 2019 - 16 August 2019, http://dx.doi.org/10.24963/ijcai.2019/121

Wang H; Zhang D; Song Y; Liu S; Huang H; Chen M; Peng H; Cai W, 2019, 'Multiscale kernels for enhanced u-shaped network to improve 3D neuron tracing', in IEEE Computer Society Conference on Computer Vision and Pattern Recognition Workshops, pp. 1105 - 1113, http://dx.doi.org/10.1109/CVPRW.2019.00144

Dodballapur V; Song Y; Huang H; Chen M; Chrzanowski W; Cai W, 2019, 'Mask-driven mitosis detection in histopathology images', in Proceedings - International Symposium on Biomedical Imaging, pp. 1855 - 1859, http://dx.doi.org/10.1109/ISBI.2019.8759164

Wang H; Zhang D; Song Y; Liu S; Wang Y; Feng D; Peng H; Cai W, 2019, 'Segmenting neuronal structure in 3d optical microscope images via knowledge distillation with teacher-student network', in Proceedings - International Symposium on Biomedical Imaging, pp. 228 - 231, http://dx.doi.org/10.1109/ISBI.2019.8759326

Wang H; Zhang D; Song Y; Liu S; Gao R; Peng H; Cai W, 2019, 'Memory and Time Efficient 3D Neuron Morphology Tracing in Large-Scale Images', in 2018 International Conference on Digital Image Computing: Techniques and Applications, DICTA 2018, http://dx.doi.org/10.1109/DICTA.2018.8615765

Zhang C; Song Y; Liu S; Lill S; Wang C; Tang Z; You Y; Gao Y; Klistorner A; Barnett M; Cai W, 2019, 'MS-GAN: GAN-Based Semantic Segmentation of Multiple Sclerosis Lesions in Brain Magnetic Resonance Imaging', in 2018 International Conference on Digital Image Computing: Techniques and Applications, DICTA 2018, http://dx.doi.org/10.1109/DICTA.2018.8615771

Liu D; Zhang D; Song Y; Zhang C; Huang H; Chen M; Cai W, 2018, 'Large kernel refine fusion net for neuron membrane segmentation', in IEEE Computer Society Conference on Computer Vision and Pattern Recognition Workshops, pp. 2293 - 2301, http://dx.doi.org/10.1109/CVPRW.2018.00297

Liu D; Zhang D; Liu S; Song Y; Jia H; Feng D; Xia Y; Cai W, 2018, 'Densely connected large kernel convolutional network for semantic membrane segmentation in microscopy images', in Proceedings - International Conference on Image Processing, ICIP, pp. 2461 - 2465, http://dx.doi.org/10.1109/ICIP.2018.8451775

Zhang C; Song Y; Zhang D; Liu S; Chen M; Cai W, 2018, 'Whole Slide Image Classification via Iterative Patch Labelling', in Proceedings - International Conference on Image Processing, ICIP, pp. 1408 - 1412, http://dx.doi.org/10.1109/ICIP.2018.8451551

Song Y; Chang H; Gao Y; Liu S; Zhang D; Yao J; Chrzanowski W; Cai W, 2018, 'Feature learning with component selective encoding for histopathology image classification', in Proceedings - International Symposium on Biomedical Imaging, pp. 257 - 260, http://dx.doi.org/10.1109/ISBI.2018.8363568

Zhang D; Song Y; Liu S; Feng D; Wang Y; Cai W, 2018, 'Nuclei instance segmentation with dual contour-enhanced adversarial network', in Proceedings - International Symposium on Biomedical Imaging, pp. 409 - 412, http://dx.doi.org/10.1109/ISBI.2018.8363604

Liu D; Zhang D; Song Y; Zhang F; O’Donnell LJ; Cai W, 2018, '3D Large Kernel Anisotropic Network for Brain Tumor Segmentation', in Lecture Notes in Computer Science (including subseries Lecture Notes in Artificial Intelligence and Lecture Notes in Bioinformatics), pp. 444 - 454, http://dx.doi.org/10.1007/978-3-030-04239-4_40

Huang Z; Ding C; Zhang L; Lee MZ; Song Y; Selvadurai H; Feng D; Zhang Y; Cai W, 2018, 'Automated Analysis of Chest Radiographs for Cystic Fibrosis Scoring', in Lecture Notes in Computer Science (including subseries Lecture Notes in Artificial Intelligence and Lecture Notes in Bioinformatics), pp. 227 - 236, http://dx.doi.org/10.1007/978-3-030-00563-4_22

Wu Y; Xia Y; Song Y; Zhang Y; Cai W, 2018, 'Multiscale network followed network model for retinal vessel segmentation', in Lecture Notes in Computer Science (including subseries Lecture Notes in Artificial Intelligence and Lecture Notes in Bioinformatics), pp. 119 - 126, http://dx.doi.org/10.1007/978-3-030-00934-2_14

Zhang D; Song Y; Liu D; Jia H; Liu S; Xia Y; Huang H; Cai W, 2018, 'Panoptic segmentation with an end-to-end cell R-CNN for pathology image analysis', in Lecture Notes in Computer Science (including subseries Lecture Notes in Artificial Intelligence and Lecture Notes in Bioinformatics), pp. 237 - 244, http://dx.doi.org/10.1007/978-3-030-00934-2_27

Song Y; Zhang F; Li Q; Huang H; Odonnell LJ; Cai W, 2017, 'Locally-Transferred Fisher Vectors for Texture Classification', in Proceedings of the IEEE International Conference on Computer Vision, pp. 4922 - 4930, http://dx.doi.org/10.1109/ICCV.2017.526

Tang Z; Zhang D; Liu S; Song Y; Peng H; Cai W, 2017, 'Automatic 3D Single Neuron Reconstruction with Exhaustive Tracing', in Proceedings - 2017 IEEE International Conference on Computer Vision Workshops, ICCVW 2017, pp. 126 - 133, http://dx.doi.org/10.1109/ICCVW.2017.23

Song Y; Zou JJ; Chang H; Cai W, 2017, 'Adapting fisher vectors for histopathology image classification', in Proceedings - International Symposium on Biomedical Imaging, pp. 600 - 603, http://dx.doi.org/10.1109/ISBI.2017.7950592

Zhang F; Kahali P; Suter Y; Norton I; Rigolo L; Savadjiev P; Song Y; Rathi Y; Cai W; Wells WM; Golby AJ; O'Donnell LJ, 2017, 'Automated connectivity-based groupwise cortical atlas generation: Application to data of neurosurgical patients with brain tumors for cortical parcellation prediction', in Proceedings - International Symposium on Biomedical Imaging, pp. 774 - 777, http://dx.doi.org/10.1109/ISBI.2017.7950633

Tareef A; Song Y; Feng D; Chen M; Cai W, 2017, 'Automated multi-stage segmentation of white blood cells via optimizing color processing', in Proceedings - International Symposium on Biomedical Imaging, pp. 565 - 568, http://dx.doi.org/10.1109/ISBI.2017.7950584

Zhang F; Norton I; Cai W; Song Y; Wells WM; O'Donnell LJ, 2017, 'Comparison between two white matter segmentation strategies: An investigation into white matter segmentation consistency', in Proceedings - International Symposium on Biomedical Imaging, pp. 796 - 799, http://dx.doi.org/10.1109/ISBI.2017.7950638

Song Y; Chang H; Huang H; Cai W, 2017, 'Supervised intra-embedding of fisher vectors for histopathology image classification', in Lecture Notes in Computer Science (including subseries Lecture Notes in Artificial Intelligence and Lecture Notes in Bioinformatics), pp. 99 - 106, http://dx.doi.org/10.1007/978-3-319-66179-7_12

Liu S; Zhang D; Song Y; Peng H; Cai W, 2017, 'Triple-crossing 2.5D convolutional neural network for detecting neuronal arbours in 3D microscopic images', in Lecture Notes in Computer Science (including subseries Lecture Notes in Artificial Intelligence and Lecture Notes in Bioinformatics), pp. 185 - 193, http://dx.doi.org/10.1007/978-3-319-67389-9_22

Zhang F; Wu W; Ning L; McAnulty G; Waber D; Gagoski B; Sarill K; Hamoda HM; Song Y; Cai W; Rathi Y; O’Donnell LJ, 2017, 'Supra-threshold fiber cluster statistics for data-driven whole brain tractography analysis', in Lecture Notes in Computer Science (including subseries Lecture Notes in Artificial Intelligence and Lecture Notes in Bioinformatics), pp. 556 - 565, http://dx.doi.org/10.1007/978-3-319-66182-7_64

Tareef A; Song Y; Cai W; Wang Y; Feng DD; Chen M, 2016, 'Automatic nuclei and cytoplasm segmentation of leukocytes with color and texture-based image enhancement', in Proceedings - International Symposium on Biomedical Imaging, pp. 935 - 938, http://dx.doi.org/10.1109/ISBI.2016.7493418

Zhang F; Savadjiev P; Cai W; Song Y; Verma R; Westin CF; O'Donnell LJ, 2016, 'Fiber clustering based white matter connectivity analysis for prediction of Autism Spectrum Disorder using diffusion tensor imaging', in Proceedings - International Symposium on Biomedical Imaging, pp. 564 - 567, http://dx.doi.org/10.1109/ISBI.2016.7493331

Song Y; Cat W; Zhang F; Huang H; Dagan Feng D; Wang Y; Chen M, 2016, 'Texture analysis of tissue aging using global and cluster constrained local coding', in Proceedings - International Symposium on Biomedical Imaging, pp. 1229 - 1232, http://dx.doi.org/10.1109/ISBI.2016.7493488

Song Y; Li Q; Huang H; Feng D; Chen M; Cai W, 2016, 'Histopathology image categorization with discriminative dimension reduction of fisher vectors', in Lecture Notes in Computer Science (including subseries Lecture Notes in Artificial Intelligence and Lecture Notes in Bioinformatics), pp. 306 - 317, http://dx.doi.org/10.1007/978-3-319-46604-0_22

Liu S; Song Y; Zhang F; Feng D; Fulham M; Cai W, 2016, 'Clique identification and propagation for multimodal brain Tumor image segmentation', in Lecture Notes in Computer Science (including subseries Lecture Notes in Artificial Intelligence and Lecture Notes in Bioinformatics), pp. 285 - 294, http://dx.doi.org/10.1007/978-3-319-47103-7_28

Zhang F; Cai W; Song Y; Young P; Traini D; Morgan L; Ong HX; Buddle L; Feng D, 2015, 'Beating cilia identification in fluorescence microscope images for accurate CBF measurement', in Proceedings - International Conference on Image Processing, ICIP, pp. 4496 - 4500, http://dx.doi.org/10.1109/ICIP.2015.7351657

Song Y; Cai W; Li Q; Zhang F; Feng DD; Huang H, 2015, 'Fusing subcategory probabilities for texture classification', in Proceedings of the IEEE Computer Society Conference on Computer Vision and Pattern Recognition, pp. 4409 - 4417, http://dx.doi.org/10.1109/CVPR.2015.7299070

Zhang F; Song Y; Liu S; Pujol S; Kikinis R; Feng D; Cai W, 2015, 'Latent semantic association for medical image retrieval', in 2014 International Conference on Digital Image Computing: Techniques and Applications, DICTA 2014, http://dx.doi.org/10.1109/DICTA.2014.7008114

Song Y; Cai W; Zhang F; Huang H; Zhou Y; Dagan Feng D, 2015, 'Bone texture characterization with fisher encoding of local descriptors', in Proceedings - International Symposium on Biomedical Imaging, pp. 5 - 8, http://dx.doi.org/10.1109/ISBI.2015.7163803

Tareef A; Song Y; Cai W; Huang H; Wang Y; Feng D; Chen M, 2015, 'Learning shape-driven segmentation based on neural network and sparse reconstruction toward automated cell analysis of cervical smears', in Lecture Notes in Computer Science (including subseries Lecture Notes in Artificial Intelligence and Lecture Notes in Bioinformatics), pp. 390 - 400, http://dx.doi.org/10.1007/978-3-319-26532-2_43

Tareef A; Song Y; Lee MZ; Feng DD; Chen M; Cai W, 2015, 'Morphological Filtering and Hierarchical Deformation for Partially Overlapping Cell Segmentation', in 2015 International Conference on Digital Image Computing: Techniques and Applications, DICTA 2015, http://dx.doi.org/10.1109/DICTA.2015.7371285

Zhang F; Song Y; Liu S; Young P; Traini D; Morgan L; Ong HX; Buddle L; Liu S; Feng D; Cai W, 2015, 'Motion representation of ciliated cell images with contour-alignment for automated CBF estimation', in Lecture Notes in Computer Science (including subseries Lecture Notes in Artificial Intelligence and Lecture Notes in Bioinformatics), pp. 300 - 307, http://dx.doi.org/10.1007/978-3-319-24574-4_36

Zhang F; Song Y; Cai W; Hauptmann AG; Liu S; Liu S; Feng DD; Chen M, 2015, 'Ranking-based vocabulary pruning in bag-of-features for image retrieval', in Lecture Notes in Computer Science (including subseries Lecture Notes in Artificial Intelligence and Lecture Notes in Bioinformatics), pp. 436 - 445

Zhang F; Song Y; Cai W; Depeursinge A; Müller H, 2015, 'USYD/HES-SO in the VISCERAL retrieval benchmark', in Lecture Notes in Computer Science (including subseries Lecture Notes in Artificial Intelligence and Lecture Notes in Bioinformatics), pp. 139 - 143, http://dx.doi.org/10.1007/978-3-319-24471-6_13

Ng G; Song Y; Cai W; Zhou Y; Liu S; Dagan Feng D, 2014, 'Hierarchical and binary spatial descriptors for lung nodule image retrieval', in 2014 36th Annual International Conference of the IEEE Engineering in Medicine and Biology Society, EMBC 2014, pp. 6463 - 6466, http://dx.doi.org/10.1109/EMBC.2014.6945108

Zhang F; Song Y; Cai W; Zhou Y; Fulham M; Eberl S; Shan S; Feng D, 2014, 'A ranking-based lung nodule image classification method using unlabeled image knowledge', in 2014 IEEE 11th International Symposium on Biomedical Imaging, ISBI 2014, pp. 1356 - 1359, http://dx.doi.org/10.1109/isbi.2014.6868129

Cai W; Zhang F; Song Y; Liu S; Wen L; Eberl S; Fulham M; Feng D, 2014, 'Automated feedback extraction for medical imaging retrieval', in 2014 IEEE 11th International Symposium on Biomedical Imaging, ISBI 2014, pp. 907 - 910, http://dx.doi.org/10.1109/isbi.2014.6868018

Zhang F; Cai W; Song Y; Young P; Traini D; Morgan L; Ong HX; Buddle L; Feng D, 2014, 'Image-based ciliary beating frequency estimation for therapeutic assessment on defective mucociliary clearance diseases', in 2014 IEEE 11th International Symposium on Biomedical Imaging, ISBI 2014, pp. 193 - 196, http://dx.doi.org/10.1109/isbi.2014.6867842

Tareef A; Song Y; Cai W; Feng DD; Chen M, 2014, 'Automated three-stage nucleus and cytoplasm segmentation of overlapping cells', in 2014 13th International Conference on Control Automation Robotics and Vision, ICARCV 2014, pp. 865 - 870, http://dx.doi.org/10.1109/ICARCV.2014.7064418

Song Y; Cai W; Huang H; Zhou Y; Feng DD; Chen M, 2014, 'Large margin aggregation of local estimates for medical image classification', in Lecture Notes in Computer Science (including subseries Lecture Notes in Artificial Intelligence and Lecture Notes in Bioinformatics), pp. 196 - 203, http://dx.doi.org/10.1007/978-3-319-10470-6_25


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