Select Publications
Journal articles
2019, 'Abstract # 3251 You sleep, but your heart is not in it - the importance of nocturnal autonomic signalling', Brain, Behavior, and Immunity, 81, pp. 12 - 12, http://dx.doi.org/10.1016/j.bbi.2019.08.045
,2018, 'Cluster of invasive Mycobacteria chimaera infections following cardiac surgery demonstrating novel clinical features and risks of aortic valve replacement', Internal Medicine Journal, 48, pp. 1514 - 1520, http://dx.doi.org/10.1111/imj.14093
,2018, 'Understanding facilitators and barriers of direct-acting antiviral therapy for hepatitis C virus infection in prison', Journal of Viral Hepatitis, 25, pp. 1526 - 1532, http://dx.doi.org/10.1111/jvh.12987
,2018, 'Understanding the determinants of BnAb induction in acute HCV infection', Viruses, 10, http://dx.doi.org/10.3390/v10110659
,2018, 'B-cell receptor reconstruction from single-cell RNA-seq with VDJPuzzle', Bioinformatics, 34, pp. 2846 - 2847, http://dx.doi.org/10.1093/BIOINFORMATICS/BTY171
,2018, 'Personalised relaxation practice to improve sleep and functioning in patients with chronic fatigue syndrome and depression: Study protocol for a randomised controlled trial', Trials, 19, http://dx.doi.org/10.1186/s13063-018-2763-8
,2018, 'The international collaborative on fatigue following infection (COFFI)', Fatigue: Biomedicine, Health and Behavior, 6, pp. 106 - 121, http://dx.doi.org/10.1080/21641846.2018.1426086
,2018, 'Longitudinal injecting risk behaviours among people with a history of injecting drug use in an Australian prison setting: The HITS-p study', International Journal of Drug Policy, 54, pp. 18 - 25, http://dx.doi.org/10.1016/j.drugpo.2017.12.013
,2018, 'Capacity of non-invasive hepatic fibrosis algorithms to replace transient elastography to exclude cirrhosis in people with hepatitis C virus infection: A multi-centre observational study', PLoS ONE, 13, http://dx.doi.org/10.1371/journal.pone.0192763
,2018, 'HCV avidity as a tool for detection of recent HCV infection: Sensitivity depends on HCV genotype', Journal of Medical Virology, 90, pp. 120 - 130, http://dx.doi.org/10.1002/jmv.24919
,2018, 'The Effect of Female Sex on Hepatitis C Incidence among People Who Inject Drugs: Results from the International Multicohort InC3 Collaborative', Clinical Infectious Diseases, 66, pp. 20 - 28, http://dx.doi.org/10.1093/cid/cix768
,2017, 'Autonomic nervous system function, activity patterns, and sleep after physical or cognitive challenge in people with chronic fatigue syndrome', Journal of Psychosomatic Research, 103, pp. 91 - 94, http://dx.doi.org/10.1016/j.jpsychores.2017.10.010
,2017, 'Immune dysregulation in patients with carpal tunnel syndrome', Scientific Reports, 7, http://dx.doi.org/10.1038/s41598-017-08123-6
,2017, 'Impact of sequencing depth and read length on single cell RNA sequencing data of T cells', Scientific Reports, 7, http://dx.doi.org/10.1038/s41598-017-12989-x
,2017, 'Cytokine signature in chronic fatigue syndrome', Proceedings of the National Academy of Sciences of the United States of America, 114, pp. E9435, http://dx.doi.org/10.1073/pnas.1714011114
,2017, 'Cognitive remediation training improves performance in patients with chronic fatigue syndrome', Psychiatry Research, 257, pp. 400 - 405, http://dx.doi.org/10.1016/j.psychres.2017.08.035
,2017, 'Ongoing incident hepatitis C virus infection among people with a history of injecting drug use in an Australian prison setting, 2005-2014: The HITS-p study', Journal of Viral Hepatitis, 24, pp. 733 - 741, http://dx.doi.org/10.1111/jvh.12701
,2017, 'Research priorities to achieve universal access to hepatitis C prevention, management and direct-acting antiviral treatment among people who inject drugs', International Journal of Drug Policy, 47, pp. 51 - 60, http://dx.doi.org/10.1016/j.drugpo.2017.05.019
,2017, 'Understanding the complex evolution of rapidly mutating viruses with deep sequencing: Beyond the analysis of viral diversity', Virus Research, 239, pp. 43 - 54, http://dx.doi.org/10.1016/j.virusres.2016.10.014
,2017, 'A molecular transmission network of recent hepatitis C infection in people with and without HIV: Implications for targeted treatment strategies', Journal of Viral Hepatitis, 24, pp. 404 - 411, http://dx.doi.org/10.1111/jvh.12652
,2017, 'Randomised controlled trial of online continuing education for health professionals to improve the management of chronic fatigue syndrome: A study protocol', BMJ Open, 7, http://dx.doi.org/10.1136/bmjopen-2016-014133
,2017, 'Geographic differences in temporal incidence trends of hepatitis C virus infection among people who inject drugs: The InC3 collaboration', Clinical Infectious Diseases, 64, pp. 860 - 869, http://dx.doi.org/10.1093/cid/ciw869
,2017, 'Limited naturally occurring escape in broadly neutralizing antibody epitopes in hepatitis C glycoprotein E2 and constrained sequence usage in acute infection', Infection, Genetics and Evolution, 49, pp. 88 - 96, http://dx.doi.org/10.1016/j.meegid.2017.01.006
,2017, 'Randomized evaluation of cognitive-behavioral therapy and graded exercise therapy for post-cancer fatigue.', Journal of Pain and Symptom Management, http://dx.doi.org/10.1016/j.jpainsymman.2017.03.015
,2017, 'Dynamic evolution of hepatitis C virus resistance-associated substitutions in the absence of antiviral treatment', Scientific Reports, 7, http://dx.doi.org/10.1038/srep41719
,2017, 'Analysis of resistance-associated substitutions in acute hepatitis C virus infection by deep sequencing across six genotypes and three continents', Journal of Viral Hepatitis, 24, pp. 37 - 42, http://dx.doi.org/10.1111/jvh.12615
,2017, 'Phylogenetic analysis of full-length, early infection, hepatitis C virus genomes among people with intravenous drug use: the InC3 Study', Journal of Viral Hepatitis, 24, pp. 43 - 52, http://dx.doi.org/10.1111/jvh.12616
,2017, 'Sequencing of hepatitis C virus for detection of resistance to direct-acting antiviral therapy: A systematic review', Hepatology Communications, 1, pp. 379 - 390, http://dx.doi.org/10.1002/hep4.1050
,2017, '[P3–225]: SYSTEMATIC REVIEW OF ASSOCIATIONS BETWEEN BEHAVIORAL AND PSYCHOLOGICAL SYMPTOMS OF DEMENTIA AND CYTOKINES', Alzheimer's & Dementia, 13, http://dx.doi.org/10.1016/j.jalz.2017.06.1438
,2017, 'B-cell receptor reconstruction from single-cell RNA-seq with VDJPuzzle', , http://dx.doi.org/10.1101/181156
,2017, 'Impact of sequencing depth and read length on single cell RNA sequencing data: lessons from T cells', , http://dx.doi.org/10.1101/134130
,2017, 'O6 Incidence of hepatitis C virus infection in two maximum-security prisons in New South Wales, Australia: the StoP-C study', Journal of Virus Eradication, 3, pp. 2 - 3, http://dx.doi.org/10.1016/s2055-6640(20)30889-x
,2017, 'P10 Injecting risk behaviours among people who inject drugs in an Australian prison setting, 2005–2014: the HITS-p study', Journal of Virus Eradication, 3, pp. 15 - 16, http://dx.doi.org/10.1016/s2055-6640(20)30751-2
,2017, 'P6 Phylogenetic clustering of recent hepatitis C virus infection between 2004 and 2015', Journal of Virus Eradication, 3, pp. 14 - 15, http://dx.doi.org/10.1016/s2055-6640(20)30747-0
,2016, 'Hepatitis C-specific effector and regulatory CD4 T-cell responses are associated with the outcomes of primary infection', Journal of Viral Hepatitis, 23, pp. 985 - 993, http://dx.doi.org/10.1111/jvh.12576
,2016, 'Maximum levels of hepatitis C virus lipoviral particles are associated with early and persistent infection', Liver International, 36, pp. 1774 - 1782, http://dx.doi.org/10.1111/liv.13176
,2016, 'Outcomes and predictors of response from an optimised, multidisciplinary intervention for chronic fatigue states', Internal Medicine Journal, 46, pp. 1421 - 1429, http://dx.doi.org/10.1111/imj.13251
,2016, 'Polymorphisms in STAT4 are not associated with treatment response and spontaneous clearance of hepatitis C virus in europeans', Hepatology, 64, pp. 2264 - 2265, http://dx.doi.org/10.1002/hep.28626
,2016, 'The effects of alcohol on spontaneous clearance of acute hepatitis C virus infection in females versus males', Drug and Alcohol Dependence, 169, pp. 156 - 162, http://dx.doi.org/10.1016/j.drugalcdep.2016.10.024
,2016, 'Historical Trends in the Hepatitis C Virus Epidemics in North America and Australia', Journal of Infectious Diseases, 214, pp. 1383 - 1389, http://dx.doi.org/10.1093/infdis/jiw389
,2016, 'Differential speed of recovery across symptom domains after naturally-occurring viral infections: Preliminary genetic associations', BRAIN BEHAVIOR AND IMMUNITY, 57, pp. E9 - E10, http://dx.doi.org/10.1016/j.bbi.2016.07.035
,2016, 'Fatigue Exacerbation by Interval or Continuous Exercise in Chronic Fatigue Syndrome', Medicine and Science in Sports and Exercise, 48, pp. 1875 - 1885, http://dx.doi.org/10.1249/MSS.0000000000000983
,2016, 'The natural history of acute Q fever: A prospective Australian cohort', QJM: An International Journal of Medicine, 109, pp. 661 - 668, http://dx.doi.org/10.1093/qjmed/hcw041
,2016, 'Gene expression in response to exercise in patients with chronic fatigue syndrome: A pilot study', Frontiers in Physiology, 7, http://dx.doi.org/10.3389/fphys.2016.00421
,2016, 'The prison economy of needles and syringes: What opportunities exist for blood borne virus risk reduction when prices are so high?', PLoS ONE, 11, http://dx.doi.org/10.1371/journal.pone.0162399
,2016, 'Incident hepatitis c virus genotype distribution and multiple infection in australian prisons', Journal of Clinical Microbiology, 54, pp. 1855 - 1861, http://dx.doi.org/10.1128/JCM.00287-16
,2016, 'Linking the T cell receptor to the single cell transcriptome in antigen-specific human T cells', Immunology and Cell Biology, 94, pp. 604 - 611, http://dx.doi.org/10.1038/icb.2016.16
,2016, 'HIV infection is associated with higher levels of monocyte chemoattractant protein-1 and eotaxin among people with recent hepatitis C virus infection', BMC Infectious Diseases, 16, http://dx.doi.org/10.1186/s12879-016-1567-2
,2016, 'Natural killer cells in highly exposed hepatitis C-seronegative injecting drug users', Journal of Viral Hepatitis, 23, pp. 464 - 472, http://dx.doi.org/10.1111/jvh.12511
,2016, 'Quality of life and social functioning during treatment of recent hepatitis C infection: A multi-centre prospective cohort', PLoS ONE, 11, http://dx.doi.org/10.1371/journal.pone.0150655
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