Select Publications

Journal articles

Niku J; Hui FKC; Taskinen S; Warton DI, 2019, 'gllvm: Fast analysis of multivariate abundance data with generalized linear latent variable models in r', METHODS IN ECOLOGY AND EVOLUTION, http://dx.doi.org/10.1111/2041-210X.13303

Popovic GC; Warton DI; Thomson FJ; Hui FKC; Moles AT, 2019, 'Untangling direct species associations from indirect mediator species effects with graphical models', Methods in Ecology and Evolution, vol. 10, pp. 1571 - 1583, http://dx.doi.org/10.1111/2041-210X.13247

Norberg A; Abrego N; Blanchet FG; Adler FR; Anderson BJ; Anttila J; Araújo MB; Dallas T; Dunson D; Elith J; Foster SD; Fox R; Franklin J; Godsoe W; Guisan A; O'Hara B; Hill NA; Holt RD; Hui FKC; Husby M; Kålås JA; Lehikoinen A; Luoto M; Mod HK; Newell G; Renner I; Roslin T; Soininen J; Thuiller W; Vanhatalo J; Warton D; White M; Zimmermann NE; Gravel D; Ovaskainen O, 2019, 'A comprehensive evaluation of predictive performance of 33 species distribution models at species and community levels', Ecological Monographs, vol. 89, http://dx.doi.org/10.1002/ecm.1370

Niku J; Brooks W; Herliansyah R; Hui FKC; Taskinen S; Warton DI, 2019, 'Efficient estimation of generalized linear latent variable models', PLoS ONE, vol. 14, http://dx.doi.org/10.1371/journal.pone.0216129

Dormann CF; Calabrese JM; Guillera-Arroita G; Matechou E; Bahn V; Bartoń K; Beale CM; Ciuti S; Elith J; Gerstner K; Guelat J; Keil P; Lahoz-Monfort JJ; Pollock LJ; Reineking B; Roberts DR; Schröder B; Thuiller W; Warton DI; Wintle BA; Wood SN; Wüest RO; Hartig F, 2018, 'Model averaging in ecology: a review of Bayesian, information-theoretic, and tactical approaches for predictive inference', Ecological Monographs, vol. 88, pp. 485 - 504, http://dx.doi.org/10.1002/ecm.1309

Wu YQ; Arsecularatne JA; Warton DI; Hoffman M, 2018, 'Effect of contact load upon attrition-corrosion of human dental enamel', Wear, vol. 414-415, pp. 101 - 108, http://dx.doi.org/10.1016/j.wear.2018.08.005

Hui FKC; Tanaka E; Warton DI, 2018, 'Order selection and sparsity in latent variable models via the ordered factor LASSO', Biometrics, vol. 74, pp. 1311 - 1319, http://dx.doi.org/10.1111/biom.12888

Stoklosa J; Warton DI, 2018, 'A Generalized Estimating Equation Approach to Multivariate Adaptive Regression Splines', Journal of Computational and Graphical Statistics, vol. 27, pp. 245 - 253, http://dx.doi.org/10.1080/10618600.2017.1360780

Popovic GC; Hui FKC; Warton DI, 2018, 'A general algorithm for covariance modeling of discrete data', Journal of Multivariate Analysis, vol. 165, pp. 86 - 100, http://dx.doi.org/10.1016/j.jmva.2017.12.002

Warton DI, 2018, 'Why you cannot transform your way out of trouble for small counts', Biometrics, vol. 74, pp. 362 - 368, http://dx.doi.org/10.1111/biom.12728

Warton DI; Hui FKC, 2017, 'The central role of mean-variance relationships in the analysis of multivariate abundance data: a response to Roberts (2017)', Methods in Ecology and Evolution, vol. 8, pp. 1408 - 1414, http://dx.doi.org/10.1111/2041-210X.12843

Niku J; Warton DI; Hui FKC; Taskinen S, 2017, 'Generalized Linear Latent Variable Models for Multivariate Count and Biomass Data in Ecology', Journal of Agricultural, Biological, and Environmental Statistics, vol. 22, pp. 498 - 522, http://dx.doi.org/10.1007/s13253-017-0304-7

Warton DI; Thibaut L; Wang YA, 2017, 'The PIT-trap — A “model-free” bootstrap procedure for inference about regression models with discrete, multivariate responses', PLoS ONE, vol. 12, http://dx.doi.org/10.1371/journal.pone.0181790

Dawson SK; Warton DI; Kingsford RT; Berney P; Keith DA; Catford JA, 2017, 'Plant traits of propagule banks and standing vegetation reveal flooding alleviates impacts of agriculture on wetland restoration', Journal of Applied Ecology, vol. 54, pp. 1907 - 1918, http://dx.doi.org/10.1111/1365-2664.12922

Warton DI; McGeoch MA, 2017, 'Technical advances at the interface between ecology and statistics: improving the biodiversity knowledge generation workflow', Methods in Ecology and Evolution, vol. 8, pp. 396 - 397, http://dx.doi.org/10.1111/2041-210X.12762

Warton DI; Stoklosa J; Guillera-Arroita G; MacKenzie DI; Welsh AH, 2017, 'Graphical diagnostics for occupancy models with imperfect detection', Methods in Ecology and Evolution, vol. 8, pp. 408 - 419, http://dx.doi.org/10.1111/2041-210X.12761

Roberts DR; Bahn V; Ciuti S; Boyce MS; Elith J; Guillera-Arroita G; Hauenstein S; Lahoz-Monfort JJ; Schröder B; Thuiller W; Warton DI; Wintle BA; Hartig F; Dormann CF, 2017, 'Cross-validation strategies for data with temporal, spatial, hierarchical, or phylogenetic structure', Ecography, vol. 40, pp. 913 - 929, http://dx.doi.org/10.1111/ecog.02881

Barrett KB; Haynes JM; Warton DI, 2017, 'Thirty years of change in a benthic macroinvertebrate community of southwestern Lake Ontario after invasion by four Ponto-Caspian species', Freshwater Science, vol. 36, pp. 90 - 102, http://dx.doi.org/10.1086/689576

Hui FKC; Warton DI; Ormerod JT; Haapaniemi V; Taskinen S, 2017, 'Variational Approximations for Generalized Linear Latent Variable Models', Journal of Computational and Graphical Statistics, vol. 26, pp. 35 - 43, http://dx.doi.org/10.1080/10618600.2016.1164708

Dawson SK; Kingsford RT; Berney P; Keith DA; Hemmings FA; Warton DI; Waters C; Catford JA, 2017, 'Frequent inundation helps counteract land use impacts on wetland propagule banks', Applied Vegetation Science, vol. 20, pp. 459 - 467, http://dx.doi.org/10.1111/avsc.12295

Warton DI; Blanchet FG; O'Hara R; Ovaskainen O; Taskinen S; Walker SC; Hui FKC, 2016, 'Extending Joint Models in Community Ecology: A Response to Beissinger et al.', Trends in Ecology and Evolution, vol. 31, pp. 737 - 738, http://dx.doi.org/10.1016/j.tree.2016.07.007

Warton DI; Lyons M; Stoklosa J; Ives AR, 2016, 'Three points to consider when choosing a LM or GLM test for count data', Methods in Ecology and Evolution, vol. 7, pp. 882 - 890, http://dx.doi.org/10.1111/2041-210X.12552

Lyons MB; Keith DA; Warton DI; Somerville M; Kingsford RT, 2016, 'Model-based assessment of ecological community classifications', Journal of Vegetation Science, vol. 27, pp. 704 - 715, http://dx.doi.org/10.1111/jvs.12400

Warton DI; Blanchet FG; O'Hara RB; Ovaskainen O; Taskinen S; Walker SC; Hui FKC, 2015, 'So Many Variables: Joint Modeling in Community Ecology', Trends in Ecology and Evolution, vol. 30, pp. 766 - 779, http://dx.doi.org/10.1016/j.tree.2015.09.007

Hui FKC; Warton DI; Foster SD, 2015, 'Order selection in finite mixture models: Complete or observed likelihood information criteria?', Biometrika, vol. 102, pp. 724 - 730, http://dx.doi.org/10.1093/biomet/asv027

Hui FKC; Warton DI; Foster SD, 2015, 'Community level models, finite mixture models, penalized likelihood, regularization, species archetype models, variable selection', Annals of Applied Statistics, vol. 9, pp. 866 - 882, http://dx.doi.org/10.1214/15-AOAS813

Hui FKC; Warton DI; Foster SD, 2015, 'Tuning Parameter Selection for the Adaptive Lasso Using ERIC', Journal of the American Statistical Association, vol. 110, pp. 262 - 269, http://dx.doi.org/10.1080/01621459.2014.951444

Warton D, 2015, 'New opportunities at the interface between ecology and statistics', Methods in Ecology and Evolution, vol. 6, pp. 363 - 365, http://dx.doi.org/10.1111/2041-210X.12345

Warton DI; Shipley B; Hastie T, 2015, 'CATS regression - a model-based approach to studying trait-based community assembly', Methods in Ecology and Evolution, vol. 6, pp. 389 - 398, http://dx.doi.org/10.1111/2041-210X.12280

Stoklosa J; Daly C; Foster SD; Ashcroft MB; Warton DI, 2015, 'A climate of uncertainty: Accounting for error in climate variables for species distribution models', Methods in Ecology and Evolution, vol. 6, pp. 412 - 423, http://dx.doi.org/10.1111/2041-210X.12217

Gibb H; Muscat D; Binns MR; Silvey CJ; Peters RA; Warton DI; Andrew NR, 2015, 'Responses of foliage-living spider assemblage composition and traits to a climatic gradient in Themeda grasslands', Austral Ecology, vol. 40, pp. 225 - 237, http://dx.doi.org/10.1111/aec.12195

Hui FKC; Taskinen S; Pledger S; Foster SD; Warton DI, 2015, 'Model-based approaches to unconstrained ordination', Methods in Ecology and Evolution, vol. 6, pp. 399 - 411, http://dx.doi.org/10.1111/2041-210X.12236

Renner IW; Elith J; Baddeley A; Fithian W; Hastie T; Phillips SJ; Popovic G; Warton DI, 2015, 'Point process models for presence-only analysis', Methods in Ecology and Evolution, vol. 6, pp. 366 - 379, http://dx.doi.org/10.1111/2041-210X.12352

Warton DI; Foster SD; De’ath G; Stoklosa J; Dunstan PK, 2015, 'Model-based thinking for community ecology', Plant Ecology, vol. 216, pp. 669 - 682, http://dx.doi.org/10.1007/s11258-014-0366-3

Gibb H; Stoklosa J; Warton DI; Brown AM; Andrew NR; Cunningham SA, 2015, 'Does morphology predict trophic position and habitat use of ant species and assemblages?', Oecologia, vol. 177, pp. 519 - 531, http://dx.doi.org/10.1007/s00442-014-3101-9

Slavich E; Warton DI; Ashcroft MB; Gollan JR; Ramp D, 2014, 'Topoclimate versus macroclimate: How does climate mapping methodology affect species distribution models and climate change projections?', Diversity and Distributions, vol. 20, pp. 952 - 963, http://dx.doi.org/10.1111/ddi.12216

Brown AM; Warton DI; Andrew NR; Binns M; Cassis G; Gibb H, 2014, 'The fourth-corner solution - using predictive models to understand how species traits interact with the environment', Methods in Ecology and Evolution, vol. 5, pp. 344 - 352, http://dx.doi.org/10.1111/2041-210X.12163

Baeten L; Warton DI; Van Calster H; De Frenne P; Verstraeten G; Bonte D; Bernhardt-Römermann M; Cornelis J; Decocq G; Eriksson O; Hédl R; Heinken T; Hermy M; Hommel P; Kirby K; Naaf T; Petřík P; Walther GR; Wulf M; Verheyen K, 2014, 'A model-based approach to studying changes in compositional heterogeneity', Methods in Ecology and Evolution, vol. 5, pp. 156 - 164, http://dx.doi.org/10.1111/2041-210X.12137

Stoklosa J; Gibb H; Warton DI, 2014, 'Fast forward selection for generalized estimating equations with a large number of predictor variables', Biometrics, vol. 70, pp. 110 - 120, http://dx.doi.org/10.1111/biom.12118

Warton D; Aarts G, 2013, 'Advancing our thinking in presence-only and used-available analysis', Journal of Animal Ecology, vol. 82, pp. 1125 - 1134, http://dx.doi.org/10.1111/1365-2656.12071

Warton DI; Renner IW; Ramp D, 2013, 'Model-based control of observer bias for the analysis of presence-only data in ecology', PLoS ONE, vol. 8, http://dx.doi.org/10.1371/journal.pone.0079168

Madon B; Warton DI; Araújo MB, 2013, 'Community-level vs species-specific approaches to model selection', Ecography, vol. 36, pp. 1291 - 1298, http://dx.doi.org/10.1111/j.1600-0587.2013.00127.x

Hui FKC; Warton DI; Foster SD; Dunstan PK, 2013, 'To mix or not to mix: Comparing the predictive performance of mixture models vs. separate species distribution models', Ecology, vol. 94, pp. 1913 - 1919, http://dx.doi.org/10.1890/12-1322.1

Dunstan PK; Foster SD; Hui FKC; Warton DI, 2013, 'Finite Mixture of Regression Modeling for High-Dimensional Count and Biomass Data in Ecology', Journal of Agricultural, Biological, and Environmental Statistics, vol. 18, pp. 357 - 375, http://dx.doi.org/10.1007/s13253-013-0146-x

Renner I; Warton DI, 2013, 'Equivalence of MAXENT and Poisson Point Process Models for Species Distribution Modeling in Ecology', Biometrics, vol. 69, pp. 274 - 281, http://dx.doi.org/10.1111/j.1541-0420.2012.01824.x

Taskinen S; Warton DI, 2013, 'Robust tests for one or more allometric lines', Journal of Theoretical Biology, vol. 333, pp. 38 - 46, http://dx.doi.org/10.1016/j.jtbi.2013.05.010

Flores-Moreno H; Thomson FJ; Warton DI; Moles AT, 2013, 'Are Introduced Species Better Dispersers Than Native Species? A Global Comparative Study of Seed Dispersal Distance', PLoS ONE, vol. 8, http://dx.doi.org/10.1371/journal.pone.0068541

Warton DI; Duursma RA; Falster DS; Taskinen S, 2012, 'SMATR 3 - an R package for estimation and inference about allometric lines', Methods in Ecology and Evolution, vol. 3, pp. 257 - 259, http://dx.doi.org/10.1111/j.2041-210X.2011.00153.x

Ashcroft MB; Gollan J; Warton DI; Ramp D, 2012, 'A novel approach to quantify and locate potential microrefugia using topoclimate, climate stability, and isolation from the matrix', Global Change Biology, vol. 18, pp. 1866 - 1879, http://dx.doi.org/10.1111/j.1365-2486.2012.02661.x

Moles AT; Flores-Moreno H; Bonser SP; Warton DI; Helm A; Warman L; Eldridge DJ; Jurado E; Hemmings F; Reich P; Cavender-Bares J; Seabloom EW; Mayfield MM; Sheil D; Djietror JC; Peri PL; Enrico L; Cabido MR; Setterfield SA; Lehmann CE; Thomson FJ, 2012, 'Invasions: The trail behind, the path ahead, and a test of a disturbing idea', Journal of Ecology, vol. 100, pp. 116 - 127, http://dx.doi.org/10.1111/j.1365-2745.2011.01915.x


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