By Professor Marc Wilkins

Journal articles

Cooper CA; Joshi HJ; Harrison M; Wilkins MR; Packer N, 2003, 'GlycosuiteDB : a curated relational database of glycoprotein glycan structures and their biological sources', Nucleic Acids Research, 31, pp. 511 - 513

Van Dyk DD; Misztal DD; Wilkins MR; Poljak A; Mackintosh JA; Varnai JC; Teber E; Walsh B; Gray PP, 2003, 'Identification of cellular changes associated with increased production of human growth hormone in a recombinant Chinese hamster ovary cell line.', Proteomics, 3, pp. 147 - 156

Pedersen SK; Harry JL; Sebastian LT; Baker J; Traini M; McCarthy JT; Manoharan A; Wilkins MR; Gooley AA; Righetti PG; Packer N; Williams KL; Herbert B, 2003, 'Unseen proteome: mining below the tip of the iceberg to find low abundance and membrane proteins', Journal of Proteome Research, 2, pp. 303 - 311, http://dx.doi.org/10.1021/pr025588i

Cooper CA; Harrison MJ; Webster JM; Wilkins MR; Packer NH, 2002, 'Data standardisation in GlycoSuiteDB.', Pacific Symposium on Biocomputing. Pacific Symposium on Biocomputing, pp. 297 - 309

Cooper CA; Harrison MJ; Wilkins MR; Packer NH, 2001, 'GlycoSuiteDB: A new curated relational database of glycoprotein glycan structures and their biological sources', Nucleic Acids Research, 29, pp. 332 - 335, http://dx.doi.org/10.1093/nar/29.1.332

Lisacek FC; Traini MD; Sexton D; Harry JL; Wilkins MR, 2001, 'Strategy for protein isoform identification from expressed sequence tags and its application to peptide mass fingerprinting', Proteomics, 1, pp. 186 - 193, http://dx.doi.org/10.1002/1615-9861(200102)1:2<186::AID-PROT186>3.0.CO;2-G

Emslie KR; Molloy MP; Barardi CRM; Jardine D; Wilkins MR; Bellamy AR; Williams KL, 2000, 'Serotype classification and characterisation of the rotavirus SA11 VP6 protein using mass spectrometry and two-dimensional gel electrophoresis', Functional and Integrative Genomics, 1, pp. 12 - 24, http://dx.doi.org/10.1007/s101420000002

Breen EJ; Hopwood FG; Williams KL; Wilkins MR, 2000, 'Automatic Poisson peak harvesting for high throughput protein identification', Electrophoresis, 21, pp. 2243 - 2251, http://dx.doi.org/10.1002/1522-2683(20000601)21:11<2243::AID-ELPS2243>3.0.CO;2-K

Kojima T; Andersen E; Sanchez JC; Wilkins MR; Hochstrasser DF; Pralong WF; Cimasoni G, 2000, 'Human gingival crevicular fluid contains mrp8 (s100a8) and mrp 14 (s100a9), two calcium-binding proteins of the s100 family', Journal of Dental Research, 79, pp. 740 - 747, http://dx.doi.org/10.1177/00220345000790020701

Wilkins M, 2000, 'Proteomic paradigms for perceiving purpose', Trends in Biotechnology, 18, pp. 91 - 92, http://dx.doi.org/10.1016/S0167-7799(99)01403-1

Harry JL; Wilkins MR; Herbert BR; Packer NH; Gooley AA; Williams KL, 2000, 'Proteomics: Capacity versus utility', Electrophoresis, 21, pp. 1071 - 1081, http://dx.doi.org/10.1002/(SICI)1522-2683(20000401)21:6<1071::AID-ELPS1071>3.0.CO;2-M

Ou K; Wilkins MR; Gooley AA; Tonella L; Sanchez JC; Tyler M; Walsh BJ; Pasquali C; Hochstrasser DF; Williams KL, 1999, 'Rapid identification and quantitation of Escherichia coli proteins separated by 2-D electrophoresis', American Biotechnology Laboratory, 17, pp. 16 - 20

Binz PA; Muller M; Walther D; Bienvenut WV; Gras R; Hoogland C; Bouchet G; Gasteiger E; Fabbretti R; Gay S; Palagi P; Wilkins MR; Rouge V; Tonella L; Paesano S; Rossellat G; Karmime A; Bairoch A; Sanchez JC; Appel RD; Hochstrasser DF, 1999, 'A molecular scanner to automate proteomic research and to display proteome images', Analytical Chemistry, 71, pp. 4981 - 4988, http://dx.doi.org/10.1021/ac990449e

Wilkins MR; Gasteiger E; Gooley AA; Herbert BR; Molloy MP; Binz PA; Ou K; Sanchez JC; Bairoch A; Williams KL; Hochstrasser DF, 1999, 'High-throughput mass spectrometric discovery of protein post-translational modifications', Journal of Molecular Biology, 289, pp. 645 - 657, http://dx.doi.org/10.1006/jmbi.1999.2794

Wilkins MR; Yan JX; Gooley AA, 1999, '2-DE spot amino acid analysis with 9-fluorenylmethyl chloroformate.', Methods in molecular biology (Clifton, N.J.), 112, pp. 445 - 460

Cooper CA; Wilkins MR; Williams KL; Packer NH, 1999, 'BOLD - A biological O-linked glycan database', Electrophoresis, 20, pp. 3589 - 3598, http://dx.doi.org/10.1002/(SICI)1522-2683(19991201)20:18<3589::AID-ELPS3589>3.0.CO;2-M

Wilkins MR; Gasteiger E; Bairoch A; Sanchez JC; Williams KL; Appel RD; Hochstrasser DF, 1999, 'Protein identification and analysis tools in the ExPASy server.', Methods in molecular biology (Clifton, N.J.), 112, pp. 531 - 552

Wilkins MR; Gasteiger E; Tonella L; Ou K; Tyler M; Sanchez JC; Gooley AA; Walsh BJ; Bairoch A; Appel RD; Williams KL; Hochstrasser DF, 1998, 'Protein identification with N and C-terminal sequence tags in proteome projects', Journal of Molecular Biology, 278, pp. 599 - 608, http://dx.doi.org/10.1006/jmbi.1998.1726

Tonella L; Walsh BJ; Sanchez JC; Ou K; Wilkins MR; Tyler M; Frutiger S; Gooley AA; Pescaru I; Appel RD; Yan JX; Bairoch A; Hoogland C; Morch FS; Hughes GJ; Williams KL; Hochstrasser DF, 1998, ''98 Escherichia coli SWISS-2DPAGE database update', Electrophoresis, 19, pp. 1960 - 1971, http://dx.doi.org/10.1002/elps.1150191114

Wilkins MR; Gasteiger E; Wheeler CH; Lindskog I; Sanchez JC; Bairoch A; Appel RD; Dunn MJ; Hochstrasser DF, 1998, 'Multiple parameter cross-species protein identification using MultiIdent - A world-wide web accessible tool', Electrophoresis, 19, pp. 3199 - 3206, http://dx.doi.org/10.1002/elps.1150191824

Traini M; Gooley AA; Ou K; Wilkins MR; Tonella L; Sanchez JC; Hochstrasser DF; Williams KL, 1998, 'Towards an automated approach for protein identification in proteome projects', Electrophoresis, 19, pp. 1941 - 1949, http://dx.doi.org/10.1002/elps.1150191112

Wilkins MR; Gasteiger E; Sanchez JC; Bairoch A; Hochstrasser DF, 1998, 'Two-dimensional gel electrophoresis for proteome projects: The effects of protein hydrophobicity and copy number', Electrophoresis, 19, pp. 1501 - 1505, http://dx.doi.org/10.1002/elps.1150190847

Hochstrasser DF; Frutiger S; Wilkins MR; Hughes G; Sanchez JC, 1997, 'Elevation of apolipoprotein E in the CSF of cattle affected by BSE', FEBS Letters, 416, pp. 161 - 163, http://dx.doi.org/10.1016/S0014-5793(97)01191-5

Wilkins MR; Williams KL, 1997, 'Cross-species protein identification using amino acid composition, peptide mass fingerprinting, isoelectric point and molecular mass: A theoretical evaluation', Journal of Theoretical Biology, 186, pp. 7 - 15, http://dx.doi.org/10.1006/jtbi.1996.0346

Yan JX; Packer NH; Tonella L; Ou K; Wilkins MR; Sanchez JC; Gooley AA; Hochstrasser DF; Williams KL, 1997, 'High sample throughput phosphoamino acid analysis of proteins separated by one- and two-dimensional gel electrophoresis', Journal of Chromatography A, 764, pp. 201 - 210, http://dx.doi.org/10.1016/S0021-9673(96)00931-4

Gooley AA; Ou K; Russell J; Wilkins MR; Sanchez JC; Hochstrasser DF; Williams KL, 1997, 'A role for Edman degradation in proteome studies', Electrophoresis, 18, pp. 1068 - 1072, http://dx.doi.org/10.1002/elps.1150180707

Liberatori S; Bini L; De Felice C; Magi B; Marzocchi B; Raggiaschi R; Frutiger S; Sanchez JC; Wilkins MR; Hughes G; Hochstrasser DF; Bracci R; Pallini V, 1997, 'A two-dimensional protein map of human amniotic fluid at 17 weeks' gestation', Electrophoresis, 18, pp. 2816 - 2822, http://dx.doi.org/10.1002/elps.1150181517

Wilkins MR; Lindskog I; Gasteiger E; Bairoch A; Sanchez JC; Hochstrasser DF; Appel RD, 1997, 'Detailed peptide characterization using PEPTIDEMASS - A World-Wide-Web-accessible tool', Electrophoresis, 18, pp. 403 - 408, http://dx.doi.org/10.1002/elps.1150180314

Sanchez JC; Rouge V; Pisteur M; Ravier F; Tonella L; Moosmayer M; Wilkins MR; Hochstrasser DF, 1997, 'Improved and simplified in-gel sample application using reswelling of dry immobilized pH gradients', Electrophoresis, 18, pp. 324 - 327, http://dx.doi.org/10.1002/elps.1150180305

Peitsch MC; Wilkins MR; Tonella L; Sanchez JC; Appel RD; Hochstrasser DF, 1997, 'Large-scale protein modelling and integration with the SWISS-PROT and SWISS-2DPAGE databases: The example of Escherichia coli', Electrophoresis, 18, pp. 498 - 501, http://dx.doi.org/10.1002/elps.1150180326

Pennington SR; Wilkins MR; Hochstrasser DF; Dunn MJ, 1997, 'Proteome analysis: From protein characterization to biological function', Trends in Cell Biology, 7, pp. 168 - 173, http://dx.doi.org/10.1016/S0962-8924(97)01033-7

Sarto C; Marocchi A; Sanchez JC; Giannone D; Frutiger S; Golaz O; Wilkins MR; Doro G; Cappellano F; Hughes G; Hochstrasser DF; Mocarelli P, 1997, 'Renal cell carcinoma and normal kidney protein expression', Electrophoresis, 18, pp. 599 - 604, http://dx.doi.org/10.1002/elps.1150180343

Sanchez JC; Wirth P; Jaccoud S; Appel RD; Sarto C; Wilkins MR; Hochstrasser DF, 1997, 'Simultaneous analysis of cyclin and oncogene expression using multiple monoclonal antibody immunoblots', Electrophoresis, 18, pp. 638 - 641, http://dx.doi.org/10.1002/elps.1150180349

Yan JX; Tonella L; Sanchez JC; Wilkins MR; Packer NH; Gooley AA; Hochstrasser DF; Williams KL, 1997, 'The Dictyostelium discoideum proteome - The SWISS-2DPAGE database of the multicellular aggregate (slug)', Electrophoresis, 18, pp. 491 - 497, http://dx.doi.org/10.1002/elps.1150180325

Sanchez JC; Schaller D; Ravier F; Golaz O; Jaccoud S; Belet M; Wilkins MR; James R; Deshusses J; Hochstrasser D, 1997, 'Translationally condrolled tumor protein: A protein identified in several nontumoral cells including erythrocytes', Electrophoresis, 18, pp. 150 - 155, http://dx.doi.org/10.1002/elps.1150180127

Wilkins MR; Sanchez JC; Gooley AA; Appel RD; Humphery-Smith I; Hochstrasser DF; Williams KL, 1996, 'Progress with proteome projects: Why all proteins expressed by a genome should be identified and how to do it', Biotechnology and Genetic Engineering Reviews, 13, pp. 19 - 50, http://dx.doi.org/10.1080/02648725.1996.10647923

Yan JX; Wilkins MR; Ou K; Gooley AA; Williams KL; Sanchez JC; Golaz O; Pasquali C; Hochstrasser DF, 1996, 'Large-scale amino-acid analysis for proteome studies', Journal of Chromatography A, 736, pp. 291 - 302, http://dx.doi.org/10.1016/0021-9673(95)01285-0

Wilkins MR; Ou K; Appel RD; Sanchez JC; Yan JX; Golaz O; Farnsworth V; Cartier P; Hochstrasser DF; Williams KL; Gooley AA, 1996, 'Rapid protein identification using N-terminal "Sequence tag" and amino acid analysis', Biochemical and Biophysical Research Communications, 221, pp. 609 - 613, http://dx.doi.org/10.1006/bbrc.1996.0643

Ou K; Wilkins MR; Yan JX; Gooley AA; Fung Y; Sheumack D; Williams KL, 1996, 'Improved high-performance liquid chromatography of amino acids derivatised with 9-fluorenylmethyl chloroformate', Journal of Chromatography A, 723, pp. 219 - 225, http://dx.doi.org/10.1016/0021-9673(95)00879-9

Wheeler CH; Berry SL; Wilkins MR; Corbett JM; Ou K; Gooley AA; Humphery-Smith I; Williams KL; Dunn MJ, 1996, 'Characterisation of proteins from two-dimensional electrophoresis gels by matrix-assisted laser desorption mass spectrometry and amino acid compositional analysis', Electrophoresis, 17, pp. 580 - 587, http://dx.doi.org/10.1002/elps.1150170329

Packer NH; Wilkins MR; Golaz O; Lawson MA; Gooley AA; Hochstrasser DF; Redmond JW; Williams KL, 1996, 'Characterization of human plasma glycoproteins separated by two-dimensional gel electrophoresis', Bio/Technology, 14, pp. 66 - 70, http://dx.doi.org/10.1038/nbt0196-66

Wilkins MR; Sanchez JC; Williams KL; Hochstrasser DF, 1996, 'Current challenges and future applications for protein maps and post-translational vector maps in proteome projects', Electrophoresis, 17, pp. 830 - 838, http://dx.doi.org/10.1002/elps.1150170504

Wilkins MR; Pasquali C; Appel RD; Ou K; Golaz O; Sanchez JC; Yan JX; Gooley AA; Hughes G; Humphery-Smith I; Williams KL; Hochstrasser DF, 1996, 'From proteins to proteomes: Large scale protein identification by two-dimensional electrophoresis and amino acid analysis', Bio/Technology, 14, pp. 61 - 65, http://dx.doi.org/10.1038/nbt0196-61

Golaz O; Wilkins MR; Sanchez JC; Appel RD; Hochstrasser DF; Williams KL, 1996, 'Identification of proteins by their amino acid composition: An evaluation of the method', Electrophoresis, 17, pp. 573 - 579, http://dx.doi.org/10.1002/elps.1150170328

Wilkins MR; Hochstrasser DF; Sanchez JC; Bairoch A; Appel RD, 1996, 'Integrating two-dimensional gel databases using the Melanie II software', Trends in Biochemical Sciences, 21, pp. 496 - 497, http://dx.doi.org/10.1016/S0968-0004(96)30043-1

Wilkins MR; Gasteiger E; Sanchez JC; Appel RD; Hochstrasser DF, 1996, 'Protein identification with sequence tags', Current Biology, 6, pp. 1543 - 1544, http://dx.doi.org/10.1016/S0960-9822(02)70764-1

Pasquali C; Frutiger S; Wilkins MR; Hughes GJ; Appel RD; Bairoch A; Schaller D; Sanchez JC; Hochstrasser DF, 1996, 'Two-dimensional gel electrophoresis of Escherichia coli homogenates: The Escherichia coli SWISS-2DPAGE database', Electrophoresis, 17, pp. 547 - 555, http://dx.doi.org/10.1002/elps.1150170325

Wilkins MR; Williams KL, 1995, 'The extracellular matrix of the Dictyostelium discoideum slug', Experientia, 51, pp. 1189 - 1196, http://dx.doi.org/10.1007/BF01944736

Zhou-Chou T; Wilkins MR; Vabdy PH; Gooley AA; Williams KL, 1995, 'Glycoprotein complexes interacting with cellulose in the "cell print" zones of the Dictyostelium discoideum extracellular matrix', Developmental Biology, 168, pp. 332 - 341, http://dx.doi.org/10.1006/dbio.1995.1084

Cordwell SJ; Wilkins MR; Poljak A; Gooley AA; Duncan MW; Williams KM; Humphery-Smith I, 1995, 'Cross-species identification of proteins separated by two-dimensional gel electrophoresis using MALDI-TOF mass spectrometry and amino acid composition', Electrophoresis, 16, pp. 438 - 443

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