Select Publications by Professor Susan Wilson

Book Chapters

Wilson SR, 2011, 'Statistical Genetics', in Lovric M (ed.), International Encyclopedia of Statistical Science, edn. 1st, Springer, Germany, pp. 1417 - 1418

Wilson SR, 2011, 'Bioinformatics', in Lovric M (ed.), International Encyclopedia of Statistical Science, edn. 1st, Springer, Germany, pp. 154 - 155

Wilson SR, 2011, 'Biostatistics', in Lovric M (ed.), International Encyclopedia of Statistical Science, edn. 1st, Springer, Germany, pp. 158 - 160

Wilson SR, 2005, 'Moran, Patrick Alfred Pierce', in Armitage P;Colton T (ed.), Encyclopedia of Biostatistics, edn. 2nd, Wiley, Chichester, UK, pp. 3332 - 3333

Wilson SR, 2005, 'Machine Learning', in Armitage P;Colton T (ed.), Encyclopedia of Biostatistics, edn. 2nd, Wiley, Chichester, UK, pp. 2923 - 2924

Wilson SR, 2005, 'Bioinformatics', in Armitage P;Colton T (ed.), Encyclopedia of Biostatistics, edn. 2nd, Wiley, Chichester, UK, pp. 461 - 462

Wilson SR, 2005, 'Bioinformatics: Past, Present and Future', in Encyclopedia of Life Support Systems (EOLSS), edn. Original, Eolss publishers, Oxford, http://www.eolss.net/

Wilson SR, 2005, 'Assortative Mating', in Armitage P;Colton T (ed.), Encyclopedia of Biostatistics, edn. 2nd, Wiley, Chichester, UK, pp. 241 - 243

Wilson SR, 2004, 'Epistasis', in Copper DN (ed.), Nature Encyclopedia of the Human Genome, edn. Vol. 2, Nature Publishing Group, London, UK, pp. 317 - 320

Journal articles

Donald MR;Wilson SR, 2017, 'Comparison and visualisation of agreement for paired lists of rankings', Statistical Applications in Genetics and Molecular Biology, vol. 16, pp. 31 - 45, http://dx.doi.org/10.1515/sagmb-2016-0036

Lin P;Forêt S;Wilson SR;Burden CJ, 2015, 'Estimation of the methylation pattern distribution from deep sequencing data', BMC Bioinformatics, http://dx.doi.org/10.1186/s12859-015-0600-6

Burden CJ;Qureshi SE;Wilson SR, 2014, 'Error estimates for the analysis of differential expression from RNA-seq count data', PeerJ, vol. 2, pp. e576 - e576, http://dx.doi.org/10.7717/peerj.576

Wang P;Wilson SR, 2013, 'A new hybrid probability-based method for identifying proteins and protein modifications', Proceedings of the IEEE Symposium on Computational Intelligence in Bioinformatics and Computational Biology, CIBCB 2013 - 2013 IEEE Symposium Series on Computational Intelligence, SSCI 2013, pp. 1 - 8, http://dx.doi.org/10.1109/CIBCB.2013.6595381

Wang P;Wilson SR, 2013, 'Mass spectrometry-based protein identification by integrating de novo sequencing with database searching.', BMC bioinformatics, vol. 14 Suppl 2, http://dx.doi.org/10.1186/1471-2105-14-S2-S24

Robles JA;Qureshi SE;Stephen SJ;Wilson SR;Burden CJ;Taylor JM, 2012, 'Efficient experimental design and analysis strategies for the detection of differential expression using RNA-Sequencing', BMC Genomics, vol. 13, pp. 484 - 484, http://dx.doi.org/10.1186/1471-2164-13-484

Burden CJ;Jing J;Wilson SR, 2012, 'Alignment-free sequence comparison for biologically realistic sequences of moderate length', Statistical Applications In Genetics and Molecular Biology, vol. 11, pp. Article 3 (28pp)

Jing J;Burden CJ;Forêt S;Wilson SR, 2010, 'Statistical considerations underpinning an alignment-free sequence comparison method', Journal of the Korean Statistical Society, vol. 39, pp. 325 - 335, http://dx.doi.org/10.1016/j.jkss.2010.02.009

Pittelkow Y;Wilson SR, 2010, 'A novel statistical model for finding patterns in cell-cycle transcription data', Pattern Recognition Letters, vol. 31, pp. 2126 - 2132

Xu A;Scarlett C;Chung L;Butturini G;Scarpa A;Gandy R;Wilson SR;Baxter RC;Smith RC, 2010, 'Discovery of serum biomarkers for pancreatic adenocarcinoma using proteomic analysis', British Journal of Cancer, vol. 103, pp. 391 - 400

Forêt S;Wilson SR;Burden CJ, 2009, 'Characterizing the D2 statistic: Word matches in biological sequences', Statistical Applications in Genetics and Molecular Biology, vol. 8, http://dx.doi.org/10.2202/1544-6115.1447

Foret S;Burden CJ;Wilson SR, 2008, 'Asymptotic behaviour and optimal word size for exact and approximate word matches between random sequences', Pamm: Proceedings In Applied Mathematics and Mechanics, vol. 7, pp. 1121801 - 1121802

Liston A;Hardy K;Pittelkow Y;Wilson SR;Makaroff LE;Fahrer AM;Goodnow CC, 2007, 'Impairment of organ-specific T cell negative selection by diabetes susceptibility genes: Genomic analysis by mRNA profiling', Genome Biology, vol. 8, http://dx.doi.org/10.1186/gb-2007-8-1-r12

Grayson TH;Ohms SJ;Brackenbury TD;Meaney KR;Peng K;Pittelkow YE;Wilson SR;Sandow SL;Hill CE, 2007, 'Vascular microarray profiling in two models of hypertension identifies caveolin-1, Rgs2 and Rgs5 as antihypertensive targets', BMC Genomics, vol. 8, http://dx.doi.org/10.1186/1471-2164-8-404

Burden CJ;Kantorovitz MR;Wilson SR, 2007, 'Approximate word matches between two random sequences', Annals of Applied Probability, vol. 18, pp. 1 - 21

Pittelkow YE;Wilson SR, 2007, 'h-Profile plots for the discovery and exploration of patterns in gene expression data with an application to time course data', BMC bioinformatics, vol. 8, pp. 486, http://dx.doi.org/10.1186/1471-2105-8-486

Hickman PE;Baldrick T;Wilson SR;Mcgill D, 2007, 'Reporting of cardiac troponin - Problems with the 99th percentile', Clinica Chimica ACTA, vol. 381, pp. 182 - 183, http://dx.doi.org/10.1016/j.cca.2007.03.012

Booth HS;Kantorovitz MR;Burden CJ;Wilson SR, 2007, 'Asymptotic behavior of K-word matches between two uniformly distributed sequences', Journal of Applied Probability, vol. 44, pp. 788 - 805

Pittelkow YE;Wilson SR, 2007, 'Visualisation of [High p, Small n] data', Computational Statistics, vol. 22, pp. 533 - 541

Ho JW K;Adams CE;Lew JB;Matthews TJ;Ng CC;Shahabi-Sirjani A;Tan LH;Zhao Y;Easteal S;Wilson SR;Jermiin LS, 2006, 'SeqVis: Visualization of compositional heterogeneity in large alignments of nucleotides', Bioinformatics, vol. 22, pp. 2162 - 2163, http://dx.doi.org/10.1093/bioinformatics/btl283

Walker EJ;Riddel J;Rodgers HJ;Basset ML;Wilson SR;Cavanaugh JA, 2006, 'IL1RN genotype is an independent risk factor for arthritis in Hereditary Haemochromatosis', Annals of the Rheumatic Diseases, vol. 65, pp. 271 - 272, http://dx.doi.org/10.1136/ard.2005.038158

Pittelkow YE;Wilson SR, 2006, 'Modeling microarray data: Interpreting and communicating the biological results', Journal of Integrative Bioinformatics, vol. 3, pp. 1 - 13, http://dx.doi.org/10.2390/biecoll-jib-2006-29

Burden CJ;Pittelkow YE;Wilson SR, 2006, 'Adsorption models of hybridisation and post-hybridisation behaviour on oligonucleotide microarrays', Journal of Physics: Condensed Matter, vol. 18, pp. 5545 - 5565, http://dx.doi.org/10.1088/0953-8984/18/23/024

Scarlett CJ;Smith RC;Saxby A;Nielson A;Samra JS;Wilson SR;Baxter RC, 2006, 'Proteomic classification of pancreatic adenocarcinoma tissue using protein chip technology', Gastroenterology, vol. 130, pp. 1670 - 1678

Pittelkow YE;Wilson SR, 2005, 'Use of principal component analysis and of the GE-biplot for the graphical exploration of gene expression data', Biometrics, vol. 61, pp. 630 - 632

Baldrick T;Hawkins RC;Wilson SR;Hickman PE, 2005, 'Uncertainty of Measurement: What it is and What is Should Be', The Clinical Biochemist Reviews, vol. 26, pp. 155 - 158

Booth HS;Burden CJ;Maindonald JH;Santoso L;Wakefield M;Wilson SR, 2005, 'Reader Reaction to `A Bayesian approach to DNA segmentation`', Biometrics, vol. 61, pp. 635 - 637

Shannon MF;Mckenzie KU S;Edgley A;Rao S;Peng K;Shweta A;Schyvens CG;Anderson WP;Wilson SR;Pittelkow YE;Ohms S;Whitworth JA, 2005, 'Optimizing microarray in experimental hypertension', Kidney International, vol. 67, pp. 364 - 370

Liston A;Lesage S;Gray DH D;O'Reilly LA;Strasser A;Fahrer AM;Boyd RL;Wilson J;Baxter AG;Gallo EM;Crabtree GR;Peng K;Wilson SR;Goodnow CC, 2004, 'Generalized resistance to thymic deletion in the NOD mouse: A polygenic trait characterized by defective induction of Bim', Immunity, vol. 21, pp. 817 - 830, http://dx.doi.org/10.1016/j.immuni.2004.10.014

Burden CJ;Pittelkow YE;Wilson SR, 2004, 'Statistical analysis of adsorption models for oligonucleotide microarrays', Statistical Applications In Genetics and Molecular Biology, vol. 3, pp. article 35, http://dx.doi.org/10.2202/1544-6115.1095

Booth HS;Macnamara SF;Nielson OM;Wilson SR, 2004, 'An iterative approach to determining the length of the longest common subsequence of two strings', Methodology and Computing in Applied Probability, vol. 6, pp. 401 - 421

Baldrick T;Wilson SR;Dimeski G;Hickman PE, 2004, 'Objective determination of appropriate reporting intervals', Annals of Clinical Biochemistry, vol. 41, pp. 385 - 390

Booth HS;Maindonald JH;Wilson SR;Gready JE, 2004, 'An efficient Z-score algorithm for assessing sequence alignments', Journal of Computational Biology, vol. 11, pp. 616 - 625

Pittelkow YE;Wilson SR, 2003, 'Visualisation of Gene Expression Data: The GE-biplot, the Chip-plot and the Gene-plot', Statistical Applications In Genetics and Molecular Biology, vol. 2, pp. article 6, http://dx.doi.org/10.2202/1544-6115.1019

Cavanaugh JA;Adams KE;Quak EJ;Bryce ME;O callaghan NJ;Rodgers HJ;Magarr GR;Butler WJ;Eaden JA;Roberts-thomson IC;Pavil P;Wilson SR;Callen DE, 2003, 'CARD15/NOD2 risk alleles in the development of Crohn’s disease in the Australian population', Annals of Human Genetics, vol. 67, pp. 35 - 41

Cavanaugh JA;Callen DF;Wilson SR;Stanford PM;Sraml ME;Gorska M;Crawford J;Whitmore SA;Shlegel C;Foote S;Kohonen-Corish M;Pavli P, 1998, 'Analysis of Australian Crohn's disease pedigrees refines the localization for susceptibility to inflammatory bowel disease on chromosome 16', Annals of Human Genetics, vol. 62, pp. 291 - 298, http://dx.doi.org/10.1017/S0003480098006976

Pilotto LS;Douglas RM;Attewell RG;Wilson SR, 1997, 'Respiratory effects associated with indoor nitrogen dioxide exposure in children', International Journal of Epidemiology, vol. 26, pp. 788 - 796, http://dx.doi.org/10.1093/ije/26.4.788

Solomon PJ;Wilson SR;Swanson CE;Cooper DA, 1990, 'Effect of zidovudine on survival of patients with AIDS in Australia', Medical Journal of Australia, vol. 153, pp. 254 - 257

Solomon PJ;Wilson SR;Swanson CE;Cooper DA, 1990, 'Predicting the course of AIDS in Australia', Medical Journal of Australia, vol. 153, pp. 386 - 394

Conference Papers

Unnikrishnan A;Beck D;Verma A;Richards LA;Thoms JA I;Kumari A;Galbraith S;Kulasekararaj A;Tobiasson M;Woll PS;Pellagatti A;Papaemmanuil E;Wilson SR;Lindeman R;Campbell PJ;Boultwood J;Lynch K;Jacobsen SE W;Mufti GJ;Hellstrom-Lindberg E;MacKenzie KL;Wong JW H;Pimanda JE, 2014, 'Identification of a Prognostic Gene Expression Signature for AZA Response in MDS and CMML Patients', in BLOOD, AMER SOC HEMATOLOGY, San Francisco, CA, presented at 56th Annual Meeting of the American-Society-of-Hematology, San Francisco, CA, 06 - 09 December 2014, http://gateway.webofknowledge.com/gateway/Gateway.cgi?GWVersion=2&SrcApp=PARTNER_APP&SrcAuth=LinksAMR&KeyUT=WOS:000349243501166&DestLinkType=FullRecord&DestApp=ALL_WOS&UsrCustomerID=891bb5ab6ba270e68a

Donald MR;Unnikrishnan A;Pimanda JE;Wilson S, 2013, 'Model Comparisons for RNA-Seq Data', in Proceedings of the 28th International Workshop on Statistical Modelling, 28th International Workshop on Statistical Modelling, Palermo, Italy, pp. 563 - 566, presented at 28th International Workshop on Statistical Modelling, Palermo, Italy, 08 - 12 July 2013


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