Select Publications
Journal articles
2018, 'Genotype to phenotype: Diet-by-mitochondrial DNA haplotype interactions drive metabolic flexibility and organismal fitness', PLoS Genetics, 14, http://dx.doi.org/10.1371/journal.pgen.1007735
,2018, 'Below-ground processes control the success of an invasive seaweed', Journal of Ecology, 106, pp. 2082 - 2095, http://dx.doi.org/10.1111/1365-2745.12966
,2018, 'Detection of carbapenem-resistant bacteria in the public area of a hospital', Journal of Global Antimicrobial Resistance, 14, pp. 166 - 168, http://dx.doi.org/10.1016/j.jgar.2018.07.005
,2018, 'Detecting signatures of a sponge-associated lifestyle in bacterial genomes', Environmental Microbiology Reports, 10, pp. 433 - 443, http://dx.doi.org/10.1111/1758-2229.12655
,2018, 'Effect of clay and iron sulphate on volatile and water-extractable organic compounds in bamboo biochars', Journal of Analytical and Applied Pyrolysis, 133, pp. 22 - 29, http://dx.doi.org/10.1016/j.jaap.2018.05.007
,2018, 'Identification and visualization of a distinct microbiome in ocular surface conjunctival tissue', Investigative Ophthalmology and Visual Science, 59, pp. 4268 - 4276, http://dx.doi.org/10.1167/iovs.18-24651
,2018, 'Functional biogeography and host specificity of bacterial communities associated with the Marine Green Alga Ulva spp.', Molecular Ecology, 27, pp. 1952 - 1965, http://dx.doi.org/10.1111/mec.14529
,2018, 'Crop-season and residual effects of sequentially applied mineral enhanced biochar and N fertiliser on crop yield, soil chemistry and microbial communities', Agriculture, Ecosystems and Environment, 255, pp. 52 - 61, http://dx.doi.org/10.1016/j.agee.2017.12.020
,2018, 'Novel ssDNA viruses detected in the virome of bleached, habitat-forming kelp Ecklonia radiata', Frontiers in Marine Science, 4, http://dx.doi.org/10.3389/fmars.2017.00441
,2018, 'Diversity, host-specificity and stability of sponge-associated fungal communities of co-occurring sponges', PeerJ, 2018, http://dx.doi.org/10.7717/peerj.4965
,2018, 'Effects of different C/N ratios on bacterial compositions and processes in an organically managed soil', Biology and Fertility of Soils, 54, pp. 137 - 147, http://dx.doi.org/10.1007/s00374-017-1246-5
,2018, 'The effects of warming and ocean acidification on growth, photosynthesis, and bacterial communities for the marine invasive macroalga Caulerpa taxifolia', Limnology and Oceanography, 63, pp. 459 - 471, http://dx.doi.org/10.1002/lno.10739
,2018, 'EPS4.04 Characterising the intestinal virome in cystic fibrosis', Journal of Cystic Fibrosis, 17, pp. S44 - S44, http://dx.doi.org/10.1016/s1569-1993(18)30256-x
,2018, 'P071 Predicting the functional intestinal profiles in cystic fibrosis', Journal of Cystic Fibrosis, 17, pp. S79 - S79, http://dx.doi.org/10.1016/s1569-1993(18)30368-0
,2018, 'Tax4Fun2: a R-based tool for the rapid prediction of habitat-specific functional profiles and functional redundancy based on 16S rRNA gene marker gene sequences', , http://dx.doi.org/10.1101/490037
,2017, 'Metagenomic analysis of soil and freshwater from zoo agricultural area with organic fertilization', PLoS ONE, 12, http://dx.doi.org/10.1371/journal.pone.0190178
,2017, 'Microbial communities in marine sediments modify success of an invasive macrophyte', Scientific Reports, 7, http://dx.doi.org/10.1038/s41598-017-10231-2
,2017, 'Temporal Stability and Composition of the Ocular Surface Microbiome', Scientific Reports, 7, http://dx.doi.org/10.1038/s41598-017-10494-9
,2017, 'A communal catalogue reveals Earth's multiscale microbial diversity', NATURE, 551, pp. 457 - +, http://dx.doi.org/10.1038/nature24621
,2017, 'A communal catalogue reveals Earth's multiscale microbial diversity', Nature, 551, pp. 457 - 463, http://dx.doi.org/10.1038/nature24621
,2017, 'The sponge microbiome project', GIGASCIENCE, 6, http://dx.doi.org/10.1093/gigascience/gix077
,2017, 'Microbial community function in the bleaching disease of the marine macroalgae Delisea pulchra', Environmental Microbiology, 19, pp. 3012 - 3024, http://dx.doi.org/10.1111/1462-2920.13758
,2017, 'Integrated metabolism in sponge-microbe symbiosis revealed by genome-centered metatranscriptomics', ISME Journal, 11, pp. 1651 - 1666, http://dx.doi.org/10.1038/ismej.2017.25
,2017, 'Binning-refiner: Improving genome bins through the combination of different binning programs', Bioinformatics, 33, pp. 1873 - 1875, http://dx.doi.org/10.1093/bioinformatics/btx086
,2017, 'Predicting the HMA-LMA status in marine sponges by machine learning', Frontiers in Microbiology, 8, http://dx.doi.org/10.3389/fmicb.2017.00752
,2017, 'Chemolithotrophic processes in the bacterial communities on the surface of mineral-enriched biochars', ISME Journal, 11, pp. 1087 - 1101, http://dx.doi.org/10.1038/ismej.2016.187
,2017, 'Competitive interactions between sponge-associated bacteria', FEMS Microbiology Ecology, 93, http://dx.doi.org/10.1093/femsec/fix008
,2017, 'Expression of eukaryotic-like protein in the microbiome of sponges', Molecular Ecology, 26, pp. 1432 - 1451, http://dx.doi.org/10.1111/mec.14003
,2017, 'HgtSIM: A simulator for horizontal gene transfer (HGT) in microbial communities', PeerJ, 2017, http://dx.doi.org/10.7717/peerj.4015
,2017, 'Microbiome patterns across the gastrointestinal tract of the rabbitfish Siganus fuscescens', PeerJ, 2017, http://dx.doi.org/10.7717/peerj.3317
,2017, 'The application of zeta diversity as a continuous measure of compositional change in ecology', , http://dx.doi.org/10.1101/216580
,2016, 'Partitioning of functional and taxonomic diversity in surface-associated microbial communities', Environmental Microbiology, 18, pp. 4391 - 4402, http://dx.doi.org/10.1111/1462-2920.13325
,2016, 'Multiple opportunistic pathogens can cause a bleaching disease in the red seaweed Delisea pulchra', Environmental Microbiology, 18, pp. 3962 - 3975, http://dx.doi.org/10.1111/1462-2920.13403
,2016, 'Evolution and function of eukaryotic-like proteins from sponge symbionts', Molecular ecology, 25, pp. 5242 - 5253, http://dx.doi.org/10.1111/mec.13812
,2016, 'Diversity, structure and convergent evolution of the global sponge microbiome', Nature Communications, 7, http://dx.doi.org/10.1038/ncomms11870
,2016, 'Disrupted progression of the intestinal microbiota with age in children with cystic fibrosis', Scientific Reports, 6, http://dx.doi.org/10.1038/srep24857
,2016, 'Effect of interspecific competition on trait variation in Phaeobacter inhibens biofilms', Environmental Microbiology, 18, pp. 1635 - 1645, http://dx.doi.org/10.1111/1462-2920.13253
,2016, 'The sponge hologenome', mBio, 7, http://dx.doi.org/10.1128/mBio.00135-16
,2016, 'Sample processing impacts the viability and cultivability of the sponge microbiome', Frontiers in Microbiology, 7, http://dx.doi.org/10.3389/fmicb.2016.00499
,2016, 'A combination of biochar-mineral complexes and compost improves soil bacterial processes, soil quality, and plant properties', Frontiers in Microbiology, 7, http://dx.doi.org/10.3389/fmicb.2016.00372
,2016, 'Effects of temperature stress and aquarium conditions on the red macroalga Delisea pulchra and its associated microbial community', Frontiers in Microbiology, 7, http://dx.doi.org/10.3389/fmicb.2016.00161
,2016, 'Expanding our understanding of the seaweed holobiont: RNA Viruses of the Red Alga Delisea pulchra', Frontiers in Microbiology, 6, http://dx.doi.org/10.3389/fmicb.2015.01489
,2016, 'Genome sequence of Klebsiella quasipneumoniae subsp. similipneumoniae MB373, an effective bioremediator', Genome Announcements, 4, http://dx.doi.org/10.1128/genomeA.01068-16
,2015, 'Continental-scale variation in seaweed host-associated bacterial communities is a function of host condition, not geography', Environmental Microbiology, 17, pp. 4078 - 4088, http://dx.doi.org/10.1111/1462-2920.12972
,2015, 'The electrochemical properties of biochars and how they affect soil redox properties and processes', Agronomy, 5, pp. 322 - 340, http://dx.doi.org/10.3390/agronomy5030322
,2015, 'High-resolution and specific detection of bacteria on complex surfaces using nanoparticle probes and electron microscopy', PLoS ONE, 10, http://dx.doi.org/10.1371/journal.pone.0126404
,2015, 'A glutathione peroxidase (GpoA) plays a role in the pathogenicity of Nautella italica strain R11 towards the red alga Delisea pulchra', FEMS Microbiology Ecology, 91, http://dx.doi.org/10.1093/femsec/fiv021
,2015, 'Biogeographic variation in the microbiome of the ecologically important sponge, Carteriospongia foliascens', PeerJ, 2015, http://dx.doi.org/10.7717/peerj.1435
,2015, 'Biotransformation of coal linked to nitrification', International Journal of Coal Geology, 137, pp. 136 - 141, http://dx.doi.org/10.1016/j.coal.2014.12.001
,2015, 'Editorial for: Microbial symbiosis of marine sessile hosts- diversity and function', Frontiers in Microbiology, 6, http://dx.doi.org/10.3389/fmicb.2015.00585
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