By Professor Fatemeh Vafaee

Journal articles

Wong MWK; Braidy N; Pickford R; Vafaee F; Crawford J; Muenchhoff J; Schofield P; Attia J; Brodaty H; Sachdev P; Poljak A, 2019, 'Plasma lipidome variation during the second half of the human lifespan is associated with age and sex but minimally with BMI', Plos One, 14, pp. e0214141, http://dx.doi.org/10.1371/journal.pone.0214141

Ebrahimkhani S; Vafaee F; Hallal S; Wei H; Lee MYT; Young PE; Satgunaseelan L; Beadnall H; Barnett MH; Shivalingam B; Suter CM; Buckland ME; Kaufman KL, 2018, 'Deep sequencing of circulating exosomal microRNA allows non-invasive glioblastoma diagnosis', Npj Precision Oncology, 2, http://dx.doi.org/10.1038/s41698-018-0071-0

Chaudhuri R; Krycer JR; Fazakerley DJ; Fisher-Wellman KH; Su Z; Hoehn KL; Yang JYH; Kuncic Z; Vafaee F; James DE, 2018, 'The transcriptional response to oxidative stress is part of, but not sufficient for, insulin resistance in adipocytes', Scientific Reports, 8, pp. 1774, http://dx.doi.org/10.1038/s41598-018-20104-x

Vafaee F; Diakos C; Kirschner MB; Reid G; Michael MZ; Horvath LG; Alinejad-Rokny H; Cheng ZJ; Kuncic Z; Clarke S, 2018, 'A data-driven, knowledge-based approach to biomarker discovery: application to circulating microRNA markers of colorectal cancer prognosis', npj Systems Biology and Applications, 4, http://dx.doi.org/10.1038/s41540-018-0056-1

Vafaee F; Dashti H; Alinejad-Rokny H, 2018, 'Transcriptomic Data Normalization', Encyclopedia of Bioinformatics and Computational Biology, Elsevier, http://dx.doi.org/10.1016/B978-0-12-809633-8.20209-4

Vafaee F; Colvin EK; Mok SC; Howell VM; Samimi G, 2017, 'Functional prediction of long non-coding RNAs in ovarian cancer-Associated fibroblasts indicate a potential role in metastasis', Scientific Reports, 7, pp. 10374, http://dx.doi.org/10.1038/s41598-017-10869-y

Ebrahimkhani S; Vafaee F; Young PE; Hur SSJ; Hawke S; Devenney E; Beadnall H; Barnett MH; Suter CM; Buckland ME, 2017, 'Exosomal microRNA signatures in multiple sclerosis reflect disease status', Scientific Reports, 7, pp. 14293, http://dx.doi.org/10.1038/s41598-017-14301-3

Domanova W; Krycer JR; Chaudhuri R; Yang P; Vafaee F; Fazakerley DJ; Humphrey SJ; James DE; Kuncic Z, 2017, 'Erratum: Unraveling kinase activation dynamics using kinase-substrate relationships from temporal large-scale phosphoproteomics studies (PLoS ONE (2016) 11: 6 (e0157763) DOI: 10.1371/journal.pone.0157763)', Plos One, 12, http://dx.doi.org/10.1371/journal.pone.0185871

Vafaee F; Krycer JR; Ma X; Burykin T; James DE; Kuncic Z, 2016, 'ORTI: An open-access Repository of transcriptional interactions for interrogating mammalian gene expression data', Plos One, 11, pp. e0164535, http://dx.doi.org/10.1371/journal.pone.0164535

Domanova W; Krycer J; Chaudhuri R; Yang P; Vafaee F; Fazakerley D; Humphrey S; James D; Kuncic Z, 2016, 'Unraveling kinase activation dynamics using kinase-substrate relationships from temporal Large-Scale phosphoproteomics studies', Plos One, 11, pp. e0157763, http://dx.doi.org/10.1371/journal.pone.0157763

Rollo JL; Banihashemi N; Vafaee F; Crawford JW; Kuncic Z; Holsinger RMD, 2016, 'Unraveling the mechanistic complexity of Alzheimer's disease through systems biology', Alzheimer S and Dementia, 12, pp. 708 - 718, http://dx.doi.org/10.1016/j.jalz.2015.10.010

Parker NR; Hudson AL; Khong P; Parkinson JF; Dwight T; Ikin RJ; Zhu Y; Cheng ZJ; Vafaee F; Chen J; Wheeler HR; Howell VM, 2016, 'Intratumoral heterogeneity identified at the epigenetic, genetic and transcriptional level in glioblastoma', Scientific Reports, 6, http://dx.doi.org/10.1038/srep22477

Wilkins K; Hassan M; Francescatto M; Jespersen J; Parra RG; Cuypers B; DeBlasio D; Junge A; Jigisha A; Rahman F; Laenen G; Willems S; Thorrez L; Moreau Y; Raju N; Chothani SP; Ramakrishnan C; Sekijima M; Gromiha MM; Slator PJ; Burroughs NJ; Szałaj P; Tang Z; Michalski P; Luo O; Li X; Ruan Y; Plewczynski D; Fiscon G; Weitschek E; Ciccozzi M; Bertolazzi P; Felici G; Cuypers B; Meysman P; Vanaerschot M; Berg M; Imamura H; Dujardin J-C; Laukens K; Domanova W; Krycer JR; Chaudhuri R; Yang P; Vafaee F; Fazakerley DJ; Humphrey SJ; James DE; Kuncic Z, 2016, 'Highlights from the 11th ISCB Student Council Symposium 2015', BMC Bioinformatics, 17, pp. 95, http://dx.doi.org/10.1186/s12859-016-0901-4

Vafaee F, 2016, 'Using multi-objective optimization to identify dynamical network biomarkers as early-warning signals of complex diseases', Scientific Reports, 6, http://dx.doi.org/10.1038/srep22023

Kotlyar M; Pastrello C; Pivetta F; Lo Sardo A; Cumbaa C; Li H; Naranian T; Niu Y; Ding Z; Vafaee F; Broackes-Carter F; Petschnigg J; Mills GB; Jurisicova A; Stagljar I; Maestro R; Jurisica I, 2014, 'In silico prediction of physical protein interactions and characterization of interactome orphans', Nature Methods, 12, pp. 79 - 84, http://dx.doi.org/10.1038/nmeth.3178

Vafaee F; Rosu D; Broackes-Carter F; Jurisica I, 2013, 'Novel semantic similarity measure improves an integrative approach to predicting gene functional associations.', BMC Systems Biology, 7, pp. 22, http://dx.doi.org/10.1186/1752-0509-7-22

Vafaee F; Nelson PC; Zhou C; Xiao W, 2008, 'Dynamic adaptation of genetic operators' probabilities', Studies in Computational Intelligence, 129, pp. 159 - 168, http://dx.doi.org/10.1007/978-3-540-78987-1_15

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