By Professor Marcel Dinger

Journal articles

Mallawaarachchi AC; Hort Y; Cowley MJ; Mccabe MJ; Minoche A; Dinger ME; Shine J; Furlong TJ, 2016, 'Whole-genome sequencing overcomes pseudogene homology to diagnose autosomal dominant polycystic kidney disease', European Journal of Human Genetics, 24, pp. 1584 - 1590, http://dx.doi.org/10.1038/ejhg.2016.48

Signal B; Gloss BS; Dinger ME, 2016, 'Computational Approaches for Functional Prediction and Characterisation of Long Noncoding RNAs', Trends in Genetics, 32, pp. 620 - 637, http://dx.doi.org/10.1016/j.tig.2016.08.004

Kumar KR; Wali GM; Kamate M; Wali G; Minoche AE; Puttick C; Pinese M; Gayevskiy V; Dinger ME; Roscioli T; Sue CM; Cowley MJ, 2016, 'Defining the genetic basis of early onset hereditary spastic paraplegia using whole genome sequencing', Neurogenetics, 17, pp. 265 - 270, http://dx.doi.org/10.1007/s10048-016-0495-z

Maag JLV; Panja D; Sporild I; Patil SS; Kaczorowski DC; Bramham CR; Dinger ME; Wibrand K, 2016, 'Dynamic expression of long noncoding RNAs and repeat elements in synaptic plasticity (vol 9, 351, 2015)', FRONTIERS IN NEUROSCIENCE, 10, http://dx.doi.org/10.3389/fnins.2076.00354

McCabe MJ; Foo CFH ; Dinger ME; Smooker PM; Stanton PG, 2016, 'Claudin-11 and occludin are major contributors to Sertoli cell tight junction function, in vitro', Asian Journal of Andrology, 18, pp. 620 - 626, http://dx.doi.org/10.4103/1008-682X.163189

Bartonicek N; Maag JLV; Dinger ME, 2016, 'Long noncoding RNAs in cancer: Mechanisms of action and technological advancements', Molecular Cancer, 15, http://dx.doi.org/10.1186/s12943-016-0530-6

Bell CC; Amaral PP; Kalsbeek A; Magor GW; Gillinder KR; Tangermann P; Di Lisio L; Cheetham SW; Gruhl F; Frith J; Tallack MR; Ru KL; Crawford J; Mattick JS; Dinger ME; Perkins AC, 2016, 'The Evx1/Evx1as gene locus regulates anterior-posterior patterning during gastrulation', Scientific Reports, 6, http://dx.doi.org/10.1038/srep26657

Thomson DW; Dinger ME, 2016, 'Endogenous microRNA sponges: Evidence and controversy', Nature Reviews Genetics, 17, pp. 272 - 283, http://dx.doi.org/10.1038/nrg.2016.20

Bussotti G; Leonardi T; Clark MB; Mercer TR; Crawford J; Malquori L; Notredame C; Dinger ME; Mattick JS; Enright AJ, 2016, 'Improved definition of the mouse transcriptome via targeted RNA sequencing', Genome Research, 26, pp. 705 - 716, http://dx.doi.org/10.1101/gr.199760.115

De Paoli-Iseppi R; Johansson PA; Menzies AM; Dias KR; Pupo GM; Kakavand H; Wilmott JS; Mann GJ; Hayward NK; Dinger ME; Long GV; Scolyer RA, 2016, 'Comparison of whole-exome sequencing of matched fresh and formalin fixed paraffin embedded melanoma tumours: Implications for clinical decision making', Pathology, 48, pp. 261 - 266, http://dx.doi.org/10.1016/j.pathol.2016.01.001

McCabe MJ; Tarulli GA; Laven-Law G; Matthiesson KL; Meachem SJ; McLachlan RI; Dinger ME; Stanton PG, 2016, 'Gonadotrophin suppression in men leads to a reduction in claudin-11 at the Sertoli cell tight junction', Human Reproduction, 31, pp. 875 - 886, http://dx.doi.org/10.1093/humrep/dew009

Merlevede J; Droin N; Qin T; Meldi K; Yoshida K; Morabito M; Chautard E; Auboeuf D; Fenaux P; Braun T; Itzykson R; De Botton S; Quesnel B; Commes T; Jourdan E; Vainchenker W; Bernard O; Pata-Merci N; Solier S; Gayevskiy V; Dinger ME; Cowley MJ; Selimoglu-Buet D; Meyer V; Artiguenave F; Deleuze JF; Preudhomme C; Stratton MR; Alexandrov LB; Padron E; Ogawa S; Koscielny S; Figueroa M; Solary E, 2016, 'Mutation allele burden remains unchanged in chronic myelomonocytic leukaemia responding to hypomethylating agents', Nature Communications, 7, http://dx.doi.org/10.1038/ncomms10767

Tevz G; McGrath S; Demeter R; Magrini V; Jeet V; Rockstroh A; McPherson S; Lai J; Bartonicek N; An J; Batra J; Dinger ME; Lehman ML; Williams ED; Nelson CC, 2016, 'Identification of a novel fusion transcript between human relaxin-1 (RLN1) and human relaxin-2 (RLN2) in prostate cancer', Molecular and Cellular Endocrinology, 420, pp. 159 - 168, http://dx.doi.org/10.1016/j.mce.2015.10.011

Maag JLV; Panja D; Sporild I; Patil SS; Kaczorowski DC; Bramham CR; Dinger ME; Wibrand K, 2016, 'Corrigendum to Dynamic expression of long noncoding RNAs and repeat elements in synaptic plasticity [Front. Neurosci. (2015), 9:351. doi: 10.3389/fnins.2015.00351]', Frontiers in Neuroscience, 10, pp. 354, http://dx.doi.org/10.3389/fnins.2016.00354

Liu PY; Sokolowski N; Guo ST; Siddiqi F; Atmadibrata B; Telfer TJ; Sun Y; Zhang L; Yu D; Mccarroll J; Liu B; Yang RH; Guo XY; Tee AE; Itoh K; Wang J; Kavallaris M; Haber M; Norris MD; Cheung BB; Byrne JA; Ziegler DS; Marshall GM; Dinger ME; Codd R; Zhang XD; Liu T, 2016, 'The BET bromodomain inhibitor exerts the most potent synergistic anticancer effects with quinone-containing compounds and anti-microtubule drugs', Oncotarget, 7, pp. 79217 - 79232, http://dx.doi.org/10.18632/oncotarget.12640

Tee AE; Liu B; Song R; Li J; Pasquier E; Cheung BB; Jiang C; Marshall GM; Haber M; Norris MD; Fletcher JI; Dinger ME; Liu T, 2016, 'The long noncoding RNA MALAT1 promotes tumor-driven angiogenesis by up-regulating pro-angiogenic gene expression', Oncotarget, 7, pp. 8663 - 8675, http://dx.doi.org/10.18632/oncotarget.6675

Zhao W; Mazar J; Lee B; Sawada J; Li JL; Shelley J; Govindarajan S; Towler D; Mattick JS; Komatsu M; Dinger ME; Perera RJ, 2016, 'The Long Noncoding RNA SPRIGHTLY Regulates Cell Proliferation in Primary Human Melanocytes', Journal of Investigative Dermatology, 136, pp. 819 - 828, http://dx.doi.org/10.1016/j.jid.2016.01.018

Gloss BS; Dinger ME, 2016, 'The specificity of long noncoding RNA expression', Biochimica et Biophysica Acta - Gene Regulatory Mechanisms, 1859, pp. 16 - 22, http://dx.doi.org/10.1016/j.bbagrm.2015.08.005

Gloss B; Signal B; Cheetham S; Gruhl F; Kaczorowski D; Perkins A; Dinger M, 2016, 'High temporal resolution of gene expression dynamics in developing mouse embryonic stem cells', , http://dx.doi.org/10.1101/084442

Palmer EE; Hayner J; Sachdev R; Cardamone M; Kandula T; Morris P; Dias KR; Tao J; Miller D; Zhu Y; Macintosh R; Dinger ME; Cowley MJ; Buckley MF; Roscioli T; Bye A; Kilberg MS; Kirk EP; Palmer E, 2015, 'Asparagine Synthetase Deficiency causes reduced proliferation of cells under conditions of limited asparagine', Molecular Genetics and Metabolism, 116, pp. 178 - 186, http://dx.doi.org/10.1016/j.ymgme.2015.08.007

Clark MB; Mercer TR; Bussotti G; Leonardi T; Haynes KR; Crawford J; Brunck ME; Cao KAL; Thomas GP; Chen WY; Taft RJ; Nielsen LK; Enright AJ; Mattick JS; Dinger ME, 2015, 'Quantitative gene profiling of long noncoding RNAs with targeted RNA sequencing', Nature Methods, 12, pp. 339 - 342, http://dx.doi.org/10.1038/nmeth.3321

Rogers S; Gloss BS; Lee CS; Sergio CM; Dinger ME; Musgrove EA; Burgess A; Caldon CE, 2015, 'Cyclin E2 is the predominant E-cyclin associated with NPAT in breast cancer cells', Cell Division, 10, pp. 1, http://dx.doi.org/10.1186/s13008-015-0007-9

Mercer TR; Clark MB; Andersen SB; Brunck ME; Haerty W; Crawford J; Taft RJ; Nielsen LK; Dinger ME; Mattick JS, 2015, 'Genome-wide discovery of human splicing branchpoints', Genome Research, 25, pp. 290 - 303, http://dx.doi.org/10.1101/gr.182899.114

Quek XC; Thomson DW; Maag JLV; Bartonicek N; Signal B; Clark MB; Gloss BS; Dinger ME, 2015, 'lncRNAdb v2.0: Expanding the reference database for functional long noncoding RNAs', Nucleic Acids Research, 43, pp. D168 - D173, http://dx.doi.org/10.1093/nar/gku988

Petrov AI; Kay SJE; Gibson R; Kulesha E; Staines D; Bruford EA; Wright MW; Burge S; Finn RD; Kersey PJ; Cochrane G; Bateman A; Griffiths-Jones S; Harrow J; Chan PP; Lowe TM; Zwieb CW; Wower J; Williams KP; Hudson CM; Gutell R; Clark MB; Dinger M; Quek XC; Bujnicki JM; Chua NH; Liu J; Wang H; Skogerbø G; Zhao Y; Chen R; Zhu W; Cole JR; Chai B; Huang HD; Huang HY; Cherry JM; Hatzigeorgiou A; Pruitt KD, 2015, 'RNAcentral: An international database of ncRNA sequences', Nucleic Acids Research, 43, pp. D123 - D129, http://dx.doi.org/10.1093/nar/gku991

Quek XC; Thomson DW; Maag JLV; Bartonicek N; Signal B; Clark MB; Gloss BS; Dinger ME, 2015, 'LncRNAdb v2.0: Expanding the reference database for functional long noncoding RNAs', Nucleic Acids Research, 43, pp. D168 - D173, http://dx.doi.org/10.1093/nar/gku988

Maag JLV; Panja D; Sporild I; Patil S; Kaczorowski DC; Bramham CR; Dinger ME; Wibrand K, 2015, 'Dynamic expression of long noncoding RNAs and repeat elements in synaptic plasticity', Frontiers in Neuroscience, 9, http://dx.doi.org/10.3389/fnins.2015.00351

Liu PY; Erriquez D; Marshall GM; Tee AE; Polly P; Wong M; Liu B; Bell JL; Zhang XD; Milazzo G; Cheung BB; Fox A; Swarbrick A; Hüttelmaier S; Kavallaris M; Perini G; Mattick JS; Dinger ME; Liu T, 2015, 'Erratum: Effects of a novel long noncoding RNA, lncUSMycN, on N-Myc expression and neuroblastoma progression (Journal of the National Cancer Institute (2014) 106:7 (dju113) DOI: 10.1093/jnci/dju113)', Journal of the National Cancer Institute, 107, http://dx.doi.org/10.1093/jnci/dju359

Aftab MN; Dinger ME; Perera RJ, 2014, 'The role of microRNAs and long non-coding RNAs in the pathology, diagnosis, and management of melanoma', Archives of Biochemistry and Biophysics, 563, pp. 60 - 70, http://dx.doi.org/10.1016/j.abb.2014.07.022

Bauer DC; Gaff C; Dinger ME; Caramins M; Buske FA; Fenech M; Hansen D; Cobiac L, 2014, 'Genomics and personalised whole-of-life healthcare', Trends in molecular medicine, 20, pp. 479 - 486, http://dx.doi.org/10.1016/j.molmed.2014.04.001

Bauer DC; Gaff C; Dinger ME; Caramins M; Buske FA; Fenech M; Hansen D; Cobiac L, 2014, 'Genomics and personalised whole-of-life healthcare', Trends in molecular medicine, 20, pp. 479 - 486, http://dx.doi.org/10.1016/j.molmed.2014.04.001

Liu PY; Erriquez D; Marshall GM; Tee AE; Polly P; Wong M; Liu B; Bell JL; Zhang XD; Milazzo G; Cheung BB; Fox A; Swarbrick A; Hüttelmaier S; Kavallaris M; Perini G; Mattick JS; Dinger ME; Liu T, 2014, 'Effects of a Novel Long Noncoding RNA, lncUSMycN, on N-Myc Expression and Neuroblastoma Progression', Journal of the National Cancer Institute, 106, pp. dju113, http://dx.doi.org/10.1093/jnci/dju113

Mattick JS; Dziadek MA; Terrill BN; Kaplan W; Spigelman AD; Bowling FG; Dinger ME, 2014, 'The impact of genomics on the future of medicine and health', Medical Journal of Australia, 201, pp. 17 - 20, http://dx.doi.org/10.5694/mja13.10920

Vogelzang A; McGuire HM; Liu SM; Gloss B; Mercado K; Earls P; Dinger ME; Batten M; Sprent J; King C, 2014, 'IL-21 contributes to fatal inflammatory disease in the absence of Foxp3⁺ T regulatory cells', Journal of Immunology, 192, pp. 1404 - 1414, http://dx.doi.org/10.4049/jimmunol.1302285

Tee EL; Ling D; Nelson C; Atmadibrata B; Dinger M; XU N; Mizukami T; Liu PY; Liu B; Cheung B; Pasquier E; Haber M; Norris MD; Suzuki T; Marshall GM; Liu T, 2014, 'The histone demethylase JMJD1A induces cell migration and invasion by up-regulating the expression of the long noncoding RNA MALAT1', Oncotarget, 5, pp. 1793 - 1804, http://dx.doi.org/10.18632/oncotarget.1785

Ulveling D; Dinger ME; Francastel C; Hubé F, 2014, 'Identification of a dinucleotide signature that discriminates coding from non-coding long RNAs', Frontiers in Genetics, 5, pp. 316, http://dx.doi.org/10.3389/fgene.2014.00316

Mercer TR; Clark MB; Crawford J; Brunck ME; Gerhardt DJ; Taft RJ; Nielsen LK; Dinger ME; Mattick JS, 2014, 'Targeted sequencing for gene discovery and quantification using RNA CaptureSeq', Nature Protocols, 9, pp. 989 - 1009, http://dx.doi.org/10.1038/nprot.2014.058

Mazar J; Zhao W; Khalil AM; Lee B; Shelley J; Govindarajan SS; Yamamoto F; Ratnam M; Aftab MN; Collins S; Finck BN; Han X; Mattick JS; Dinger ME; Perera RJ, 2014, 'The functional characterization of long noncoding RNA SPRY4-IT1 in human melanoma cells', Oncotarget, 5, pp. 8959 - 8969, http://dx.doi.org/10.18632/oncotarget.1863

Dinger ME, 2014, 'Long non-coding RNAs in disease and development', Pathology, 46, pp. S26 - S26, http://dx.doi.org/10.1097/01.pat.0000443465.57388.b4

Li JL; Mazar J; Zhong C; Faulkner GJ; Govindarajan SS; Zhang Z; Dinger ME; Meredith G; Adams C; Zhang S; Mattick JS; Ray A; Perera RJ, 2013, 'Genome-wide methylated CpG island profiles of melanoma cells reveal a melanoma coregulation network', Scientific Reports, 3, http://dx.doi.org/10.1038/srep02962

Herschkowitz JI; Coarfa C; Prat A; Toneff MJ; Hoadley KA; Dinger ME; Mattick JS; Mani SA; Perou CM; Rosen JM, 2013, 'The role of long noncoding RNAs in epithelial to mesenchymal transition and cancer stem cells', MOLECULAR CANCER RESEARCH, 11, http://dx.doi.org/10.1158/1557-3125.ADVBC-A039

Dave RK; Dinger ME; Andrew M; Askarian-Amiri M; Hume DA; Kellie S, 2013, 'Regulated Expression of PTPRJ/CD148 and an Antisense Long Noncoding RNA in Macrophages by Proinflammatory Stimuli', PLoS ONE, 8, http://dx.doi.org/10.1371/journal.pone.0068306

Cheetham SW; Gruhl F; Mattick JS; Dinger ME, 2013, 'Long noncoding RNAs and the genetics of cancer', British Journal of Cancer, 108, pp. 2419 - 2425, http://dx.doi.org/10.1038/bjc.2013.233

Amaral PP; Dinger ME; Mattick JS, 2013, 'Non-coding RNAs in homeostasis, disease and stress responses: An evolutionary perspective', Briefings in Functional Genomics, 12, pp. 254 - 278, http://dx.doi.org/10.1093/bfgp/elt016

Marcellin E; Mercer TR; Licona-Cassani C; Palfreyman RW; Dinger ME; Steen JA; Mattick JS; Nielsen LK, 2013, 'Saccharopolyspora erythraea’s genome is organised in high-order transcriptional regions mediated by targeted degradation at the metabolic switch', BMC Genomics, 14, pp. 15 - 25, http://dx.doi.org/10.1186/1471-2164-14-15

Dinger M; Mattick JS, 2013, 'The extent of functionality in the human genome.', The HUGO Journal, 7, pp. 1 - 4, http://dx.doi.org/10.1186/1877-6566-7-2

Chen H; Palmer JS; Thiagarajan RD; Dinger ME; Lesieur E; Chiu H; Schulz A; Spiller C; Grimmond SM; Little MH; Koopman P; Wilhelm D, 2012, 'Identification of novel markers of mouse fetal ovary development', PLoS ONE, 7, http://dx.doi.org/10.1371/journal.pone.0041683

Shore AN; Kabotyanski EB; Roarty K; Smith MA; Zhang Y; Creighton CJ; Dinger ME; Rosen JM, 2012, 'Pregnancy-induced noncoding RNA (PINC) associates with polycomb repressive complex 2 and regulates mammary epithelial differentiation', PLoS Genetics, 8, pp. e1002840, http://dx.doi.org/10.1371/journal.pgen.1002840

Mercer TR; Gerhardt DJ; Dinger ME; Crawford J; Trapnell C; Jeddeloh JA; Mattick JS; Rinn JL, 2012, 'Targeted RNA sequencing reveals the deep complexity of the human transcriptome', Nature Biotechnology, 30, pp. 99 - 104, http://dx.doi.org/10.1038/nbt.2024

Smart CE; Askarian-amiri ME; Wronski A; Dinger ME; Crawford JA; Ovchinnikov DA; Vargas AC; Reid LE; Simpson PT; Song S; Wiesner C; French JD; Dave RK; da Silva L; Purdon AS; Andrew M; Mattick JS; Lakhani SR; Brown MA; Kellie S, 2012, 'Expression and function of the protein tyrosine phosphatase receptor J (PTPRJ) in normal mammary epithelial cells and breast tumors', PLoS One, 7, pp. e40742, http://dx.doi.org/10.1371/journal.pone.0040742

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