My Expertise
I lead a translational research program developing human organoid models and regenerative epithelial therapies for chronic airway diseases including cystic fibrosis, bronchiectasis and primary ciliary dyskinesia.
These diseases cause lifelong morbidity and remain difficult to treat because conventional experimental models often fail to capture human disease biology or predict therapeutic response. My research addresses this challenge by developing patient-derived organoid systems and stem cell-based epithelial models that allow direct investigation of disease mechanisms and therapeutic efficacy in human tissue.
My laboratory integrates stem cell biology, genome engineering, extracellular vesicle biology and biomaterials engineering to build advanced human disease models and develop regenerative epithelial therapies. These platforms are used to evaluate emerging therapeutics, identify biomarkers of disease progression and support precision medicine strategies for respiratory disease.
Beyond laboratory discovery, my work contributes to building national capability in human-relevant biomedical research through leadership roles in initiatives such as the Non-Animal Technologies Network and the NSW Organoid Innovation Centre. This work supports the development and implementation of organoid-based research platforms that improve translational discovery and accelerate the development of new therapies for chronic disease.
Keywords
Fields of Research (FoR)
Cell development, proliferation and death, Medical biochemistry - proteins and peptides (incl. medical proteomics), Regenerative medicine (incl. stem cells), Paediatrics, Epigenetics (incl. Genome Methylation and Epigenomics), Gene and Molecular Therapy, Regenerative Medicine (incl. Stem Cells and Tissue Engineering), Respiratory Diseases, Infectious DiseasesSEO tags
Biography
I develop human organoid models and regenerative epithelial therapies to enable precision medicine and translational treatment strategies for cystic fibrosis, bronchiectasis and related chronic airway diseases.
I am a Scientia Associate Professor in the School of Biomedical Sciences at UNSW Sydney and Head of the Regeneration and Stem Cell Translational Research Laboratory. My research program focuses on developing human stem cell and...view more
I develop human organoid models and regenerative epithelial therapies to enable precision medicine and translational treatment strategies for cystic fibrosis, bronchiectasis and related chronic airway diseases.
I am a Scientia Associate Professor in the School of Biomedical Sciences at UNSW Sydney and Head of the Regeneration and Stem Cell Translational Research Laboratory. My research program focuses on developing human stem cell and organoid systems that allow direct investigation of disease biology and therapeutic response in human tissue. I serve as Academic Lead of the UNSW node of the NSW Organoid Innovation Centre and hold a leadership role in the Non-Animal Technologies Network (NAT-Net), a NSW Government–supported initiative advancing human-relevant biomedical research systems across Australia.
My laboratory develops patient-derived organoid models from airway, gut, liver and other epithelial tissues to investigate the mechanisms underlying chronic respiratory disease. These systems enable mechanistic investigation of cystic fibrosis, bronchiectasis and primary ciliary dyskinesia using advanced functional assays, genome engineering and multi-omics approaches. A major focus of the program is the development of precision medicine platforms capable of predicting individual therapeutic response and identifying biomarkers of disease progression.
A central objective of my research is to translate stem cell technologies into clinically relevant therapies. My group is developing regenerative airway epithelial transplantation strategies and biomaterial-supported epithelial repair approaches aimed at restoring airway function in chronic respiratory disease. These studies integrate stem cell biology, biomaterials engineering and clinical collaboration to advance regenerative airway therapies toward clinical implementation.
Through national and international collaborations with clinicians, research institutes and industry partners, my work contributes to advancing organoid-based precision medicine, regenerative respiratory therapeutics and the adoption of non-animal technologies for biomedical research. My research has been recognised through awards including the Tall Poppy Science Award and the UNSW Faculty of Medicine & Health Innovation Award.
My Qualifications
PhD, Australian National University
MSc (Distinction), University of Otago, New Zealand
BSc, The University of Auckland, New Zealand
My Awards
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Young Tall Poppy Science Award |
Australian Institute of Policy and Science |NSW Young Tall Poppy Science Award |
2022 |
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Best EMCR Poster Award |
Australian Academy of Science | AU-China Precision Medicine Symposium |
2019 |
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EMCR Travel Award |
Australian Academy of Science | AU-China Precision Medicine Symposium |
2019 |
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Travel Award |
Australian Academy of Science | Science at the Shine Dome Early-and Mid-Career Researchers Program |
2018 |
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Finalist |
Annual Quality and Innovation Awards | The Sydney Children’s Hospital Network |
2018 |
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Travel Award |
SIDRA Functional Genomics Towards Precision Medicine Symposium. Doha Qatar |
2017 |
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Travel Award |
Vice-Chancellor's HDR | Australian National University (ANU) |
2012 |
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Best PhD Candidate Talk Award |
Genetics Society of Australasia Conference 2010 |
2010 |
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Travel Award |
University of Otago, New Zealand |
2008 |
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Best Poster Presentation Award |
Molecular Basis of Cancer and Development Meeting 2007 |
2007 |
My Research Activities
My research program develops human stem cell and organoid systems to understand disease mechanisms, predict therapeutic response and advance regenerative treatments for chronic airway disease.
A central focus of my work is the development of patient-derived epithelial organoid models that enable direct investigation of disease biology in human tissue. My laboratory builds and studies organoid systems derived from airway, gut, liver and other epithelial tissues to investigate the mechanisms underlying cystic fibrosis, bronchiectasis and primary ciliary dyskinesia. These models allow functional assessment of epithelial biology and provide powerful platforms for studying disease pathways and therapeutic response.
My group integrates stem cell biology, genome engineering, advanced imaging and multi-omics approaches to develop precision medicine platforms capable of predicting individual treatment responses. These systems are used to evaluate emerging therapeutics, identify biomarkers of disease progression and support personalised treatment strategies for patients with chronic respiratory disease.
The laboratory maintains one of the largest collections of patient-derived airway organoid models in Australia, representing a wide spectrum of cystic fibrosis mutations and airway disease phenotypes. This biobank enables translational studies that link patient biology with therapeutic response and supports collaborative research with clinicians and international partners.
In parallel, my research aims to translate stem cell technologies into regenerative therapies for airway disease. My group is developing epithelial transplantation strategies and biomaterial-supported epithelial repair approaches designed to restore airway function in patients with severe respiratory disease.
Beyond laboratory research, I contribute to national capability in human-relevant biomedical research systems. I hold leadership roles in initiatives including the Non-Animal Technologies Network (NAT-Net) and the NSW Organoid Innovation Centre, which aim to accelerate development and adoption of organoid technologies and other human-based experimental models across Australia.
Through these activities, my research advances organoid-based disease modelling, regenerative medicine and precision therapeutic strategies for respiratory disease.
My Research Supervision
Supervision keywords
Areas of supervision
Shafagh is interested in supervising both Honours and HDR (Masters and PhD) students in the areas of personalised medicine and Respiratory disease. If you are interested, please contact her via email describing why you would like to undertake a degree in her lab and providing your results from the UNSW HDR Self-Assessment Tool (applicable only to Masters and PhD candidates).
Currently supervising
PhD student (July 2016- current)
Hons and Masters students
My Engagement
Professional Roles and Leadership
Executive Committee Member, Non-Animal Technologies Network
Research Pillar Co-Chair, Non-Animal Technologies Network
Research Committee Member, Thoracic Society of Australia and New Zealand (since 2020)
Research Committee Member, European Cystic Fibrosis Society
Executive Committee Member, Early Career Academic Network (ECAN), University of New South Wales (since 2020)
Co-Chair, Faculty of Medicine & Health Early Career Academic Network, University of New South Wales (since 2020)
Research and Commercialisation Committee Member, Cure4CF Foundation Australia
Professional Memberships
Member, Australian Centre for NanoMedicine
Member, Australian Living Organoid Alliance
Member, Thoracic Society of Australia and New Zealand
Member, European Cystic Fibrosis Society
Member, Australian Society for Medical Research
Member, Genetics Society of Australasia
Member, Women in Research Network
Community Engagement
I work closely with patient and advocacy organisations including Cure4CF Foundation Australia to support research translation, community engagement and initiatives that connect patient communities with advances in cystic fibrosis and respiratory disease research.