By Associate Professor Jai Tree

Journal articles

Tree JJ; Ulett GC; Hobman JL; Constantinidou C; Brown NL; Kershaw C; Schembri MA; Jennings MP; McEwan AG, 2007, 'The multicopper oxidase (CueO) and cell aggregation in Escherichia coli', Environmental Microbiology, 9, pp. 2110 - 2116, http://dx.doi.org/10.1111/j.1462-2920.2007.01320.x

Tree JJ; Kidd SP; Jennings MP; McEwan AG, 2005, 'Copper sensitivity of cueO mutants of Escherichia coli K-12 and the biochemical suppression of this phenotype', Biochemical and Biophysical Research Communications, 328, pp. 1205 - 1210, http://dx.doi.org/10.1016/j.bbrc.2005.01.084

Preprints

Mediati DG; Dan W; Lalaouna D; Dinh H; Pokhrel A; Stinear TP; Cain AK; Tree JJ, 2023, The 3’ UTR of vigR is required for virulence in Staphylococcus aureus and has expanded through STAR sequence repeat insertions, http://dx.doi.org/10.1101/2023.05.16.541063

Sy BM; Tree JJ, 2021, Enterohaemorrhagic E. coli utilizes an AND-OR logic gate to regulate expression of an outer membrane haem receptor, http://dx.doi.org/10.1101/2021.08.24.457593

Charbonnier M; Probst-Lotze S; Racine H; Radin JN; Rios-Delgado G; Laster HM; Kohl MP; Mazgaj R; Blum M; Marchand V; Chicher J; Marzi S; Romby P; Tree JJ; Waldron KJ; Boyd JM; Dutheil JY; Kehl-Fie TE; Lalaouna D, A Zur-dependent regulatory RNA involved in maintaining zinc homeostasis in Staphylococcus aureus, http://dx.doi.org/10.1101/2025.08.23.671911

Safari F; Tree JJ; Vafaee F, From Nucleotides to Numbers: A Comprehensive Review of RNA Feature Extraction Methods for Computational Modelling, http://dx.doi.org/10.20944/preprints202508.1739.v1

Iosub IA; Marchioretto M; Sy B; McKellar S; Nieken KJ; van Nues RW; Tree JJ; Viero G; Granneman S, Hfq CLASH uncovers sRNA-target interaction networks involved in adaptation to nutrient availability, http://dx.doi.org/10.1101/481986

Safari F; Mediati DG; Alquethamy S; Tree JJ; Vafaee F, Molecular Determinants of Functional Bacterial sRNA–mRNA Interactions Revealed by Integrating RNA Interactomes and Interpretable Machine Learning, http://dx.doi.org/10.64898/2026.08.26.747384

Poudyal P; Sy B; Mediati DG; Payne M; Nandel V; Norris D; McAteer S; Ullah A; Li S; Menz L; Waters SA; Dallman TJ; Baker M; Lan R; Gally D; Tree J, Phage-encoded sRNA counteracts xenogenic silencing in pathogenic E. coli, http://dx.doi.org/10.1101/2025.11.27.690950

Wu W; Pang CNI; Mediati D; Tree JJ, The functional small RNA interactome reveals targets for the vancomycin-responsive sRNA RsaOI in vancomycin tolerant Staphylococcus aureus, http://dx.doi.org/10.1101/2023.08.23.554412

Mediati DG; Alquethamy S; Jin C; Tree JJ, The intrinsically disordered AR2 domain of RNase E binds mRNA translation initiation regions, http://dx.doi.org/10.64898/2026.08.11.744331

Back to profile page