Journal articles
Murray DD; Suzuki K; Law M; Trebicka J; Neuhaus J; Wentworth D; Johnson M; Vjecha MJ; Kelleher AD; Emery S; Aagaard B; Aragon E; Arnaiz J; Borup L; Clotet B; Dragsted U; Fau A; Gey D; Grarup J; Hengge U; Herrero P; Jansson P; Jensen B; Jensen K; Juncher H; Lopez P; Lundgren JD; Matthews C; Mollerup D; Pearson M; Phillips A; Reilev S; Tillmann K; Varea S; Angus B; Babiker A; Cordwell B; Darbyshire J; Dodds W; Fleck S; Horton J; Hudson F; Moraes Y; Pacciarini F; Palfreeman A; Paton N; Smith N; Van Hooff F; Bebchuk J; Collins G; Denning E; DuChene A; Fosdick L; Harrison M; Herman-Lamin K; Krum E; Larson G; Neaton J; Nelson R; Quan K; Quan S; Schultz T; Thompson G; Wyman N; Carey C; Chan F; Cooper D; Courtney-Rodgers D; Drummond F; Harrod M; Jacoby S; Kearney L; Lin E; Pett S; Robson R; Seneviratne N; Stewart M; Watts E; Finley E; Gordin F; Sánchez A; Standridge B; Belloso W; Davey R; Duprez D; Gatell J; Hoy J; Lifson A; Pederson C; Perez G; Price R; Prineas R; Rhame F; Sampson J; Worley J; Modlin J; Beral V; Chaisson R; Fleming T; Hill C; Bloch M; Cooper D; Konecny P; Carr A; Medland N; Sullivan J; Han A, 2015, 'Circulating microRNAs in sera correlate with soluble biomarkers of immune activation but do not predict mortality in ART treated individuals with HIV-1 infection: A case control study', Plos One, 10, pp. e0139981, http://dx.doi.org/10.1371/journal.pone.0139981
Swaminathan S; Murray DD; Kelleher AD, 2013, 'Mirnas and HIV: Unforeseen Determinants Of Host-Pathogen Interaction', Immunological Reviews, 254, pp. 265 - 280, http://dx.doi.org/10.1111/imr.12077Document
Swaminathan S; Suzuki K; Seddiki N; Kaplan W; Cowley MJ; Hood CL; Clancy JL; Murray DD; Mendez Ortega C; Gelgor L; Anderson B; Roth N; Cooper DA; Kelleher AD, 2012, 'Differential regulation of the Let-7 family of microRNAs in CD4+ T cells alters IL-10 expression.', Journal of Immunology, 188, pp. 6238 - 6246, http://dx.doi.org/10.4049/jimmunol.1101196
Swaminathan S; Kelleher AD; Murray DD, 2012, 'The role of microRNAs in HIV-1 pathogenesis and therapy', AIDS, 26, pp. 1325 - 1334, http://dx.doi.org/10.1097/QAD.0b013e328352adca
Suzuki K; Ishida T; Yamagishi M; Ahlenstiel C; Swaminathan S; Marks K; Murray D; McCartney EM; Beard MR; Alexander M; Purcell DF; Cooper DA; Watanabe T; Kelleher AD, 2011, 'Transcriptional gene silencing of HIV-1 through promoter targeted RNA is highly specific.', RNA biology, 8, pp. 1035 - 1046
Conference Papers
Kamstrup P; Sand JMB; Ulrik C; Janner J; Rønnow SR; Leeming DJ; Jensen SG; Wilcke T; Miravitlles M; Mathioudakis A; Lapperre T; Frikke-Schmidt R; Murray D; Itenov T; Bossios A; Dam S; Vestbo J; Biering-Sørensen T; Karsdal M; Jensen JS; Sivapalan P, 2022, 'Biomarkers of coagulative properties in patients admitted with AECOPD.', in 05.02 - Monitoring airway disease, European Respiratory Society, pp. 3570 - 3570, presented at ERS International Congress 2022 abstracts, http://dx.doi.org/10.1183/13993003.congress-2022.3570
Preprints
Marandi RZ; Frahm AS; Lundgren J; Murray DD; Milojevic M, 2025, Medical artificial intelligence toolbox (MAIT): an explainable machine learning framework for binary classification, survival modelling, and regression analyses, http://dx.doi.org/10.48550/arxiv.2501.04547
Zucco AG; Bennedbæk M; Ekenberg C; Gabrielaite M; Leung P; Polizzotto MN; Kan V; Murray DD; Lundgren JD; Macpherson CR; group TISS, Associations of functional HLA class I groups with HIV viral load in a heterogeneous cohort, http://dx.doi.org/10.1101/2022.06.21.22276431
Gelpi M; Mikaeloff F; Knudsen AD; Benfeitas R; Krishnan S; Høgh J; Murray DD; Ullum H; Neogi U; Nielsen SD, Central role of the glutamate metabolism in long-term antiretroviral treated HIV-infected individuals with metabolic syndrome: a cross-sectional cohort study, http://dx.doi.org/10.1101/2021.04.01.21254778
Group ATBS; Lundgren JD; Grund B; Barkauskas CE; Holland TL; Gottlieb RL; Sandkovsky U; Brown SM; Knowlton KU; Self WH; Files DC; Jain MK; Benfield T; Bowdish ME; Leshnower BG; Baker JV; Jensen J-U; Gardner EM; Ginde AA; Harris ES; Johansen IS; Markowitz N; Matthay MA; Østergaard L; Chang CC; Goodman A; Chang W; Dewar RL; Gerry NP; Higgs ES; Highbarger H; Murray DD; Murray TA; Natarajan V; Paredes R; Parmar MKB; Phillips AN; Reilly C; Rupert AW; Sharma S; Shaw-Saliba K; Sherman BT; Teitelbaum M; Wentworth D; Cao H; Klekotka P; Babiker AG; Davey VJ; Gelijns AC; Kan VL; Polizzotto MN; Thompson BT; Lane HC; Neaton JD, Clinical and Virological Response to a Neutralizing Monoclonal Antibody for Hospitalized Patients with COVID-19, http://dx.doi.org/10.1101/2021.07.19.21260559
Murray DD; Babiker AG; Baker JV; Barkauskas CE; Brown SM; Chang CC; Davey VJ; Gelijns AC; Ginde AA; Grund B; Higgs E; Hudson F; Kan VL; Lane HC; Murray TA; Paredes R; Parmar MKB; Pett S; Phillips AN; Polizzotto MN; Reilly C; Sandkovsky U; Sharma S; Teitelbaum M; Thompson BT; Young BE; Neaton JD; Lundgren JD, Design and implementation of an international, multi-arm, multi-stage platform master protocol for trials of novel SARS-CoV-2 antiviral agents: Therapeutics for Inpatients with COVID-19 (TICO/ACTIV-3), http://dx.doi.org/10.1101/2020.11.08.20227876
Villumsen SO; Benfeitas R; Knudsen AD; Gelpi M; Høgh J; Thomsen MT; Murray D; Ullum H; Neogi U; Nielsen SD, Integrative lipidomics and metabolomics for system-level understanding of the metabolic syndrome in long-term treated HIV-infected individuals, http://dx.doi.org/10.1101/2021.05.04.21256640
Mikaeloff F; Gelpi M; Benfeitas R; Knudsen AD; Vestad B; Høgh J; Hov JR; Benfield T; Murray D; Giske CG; Mardinoglu A; Trøseid M; Nielsen SD; Neogi U, Network-based multi-omics integration reveals metabolic at-risk profile within treated HIV-infection, http://dx.doi.org/10.1101/2022.06.08.495246
Murray JM; Murray DD; Schvoerer E; Akand EH, SARS-COV-2 Delta and Omicron community transmission networks, http://dx.doi.org/10.1101/2022.05.30.22275787
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