Select Publications
Preprints
, 2026, A distributed, privacy-preserving platform for linkage of epidemiological data with pathogen genome sequences, http://dx.doi.org/10.64898/2026.01.18.26344367
, 2024, How does date-rounding affect phylodynamic inference for public health?, http://dx.doi.org/10.1101/2024.09.11.24313508
, 2024, Exploring SNP Filtering Strategies: The Influence of Strict vs Soft Core, http://dx.doi.org/10.1101/2024.08.26.609800
, 2023, Clockor2: Inferring global and local strict molecular clocks using root-to-tip regression, http://dx.doi.org/10.1101/2023.07.13.548947
, 2022, Decoding the fundamental drivers of phylodynamic inference, http://dx.doi.org/10.1101/2022.06.07.495205
, 2021, Plagued by a cryptic clock: Insight and issues from the global phylogeny of Yersinia pestis, http://dx.doi.org/10.21203/rs.3.rs-1146895/v1
, 2021, Assessment of COVID-19 intervention strategies in the Nordic countries using genomic epidemiology, http://dx.doi.org/10.1101/2021.09.04.21263123
, 2020, The impact of early public health interventions on SARS-CoV-2 transmission and evolution, http://dx.doi.org/10.1101/2020.11.18.20233767
, 2020, Temporal signal and the phylodynamic threshold of SARS-CoV-2, http://dx.doi.org/10.1101/2020.05.04.077735
, 2020, Direct RNA sequencing and early evolution of SARS-CoV-2, http://dx.doi.org/10.1101/2020.03.05.976167
, 2019, Infectious disease phylodynamics with occurrence data, http://dx.doi.org/10.1101/596700