By Dr Matthew Scotch

Preprints

O'Connor K; Weissenbacher D; Elyaderani A; Lautenbach E; Scotch M; Gonzalez-Hernandez G, 2024, Patient-Related Metadata Reported in Sequencing Studies of SARS-CoV-2: Protocol for a Scoping Review and Bibliometric Analysis., http://dx.doi.org/10.1101/2023.07.14.23292681

Stone H; Jindal M; Lim S; Dawson R; Quigley A; Scotch M; MacIntyre R, 2024, Potential Pathways of Spread of Highly Pathogenic Avian Influenza A/H5N1 Clade 2.3.4.4b Across Dairy Farms in the United States, http://dx.doi.org/10.1101/2024.05.02.24306785

Weissenbacher D; O'Connor K; Klein A; Golder S; Flores I; Elyaderani A; Scotch M; Gonzalez-Hernandez G, 2023, Text mining biomedical literature to identify extremely unbalanced data for digital epidemiology and systematic reviews: dataset and methods for a SARS-CoV-2 genomic epidemiology study., http://dx.doi.org/10.1101/2023.07.29.23293370

Magge A; Weissenbacher D; O'Connor K; Scotch M; Gonzalez-Hernandez G, 2022, SEED: Symptom Extraction from English Social Media Posts using Deep Learning and Transfer Learning., http://dx.doi.org/10.1101/2021.02.09.21251454

Bowes DA; Driver EM; Kraberger S; Fontenele RS; Holland LA; Wright J; Johnston B; Savic S; Newell ME; Adhikari S; Kumar R; Goetz H; Binsfeld A; Nessi K; Watkins P; Mahant A; Zevitz J; Deitrick S; Brown P; Dalton R; Garcia C; Inchausti R; Holmes W; Tian X-J; Varsani A; Lim ES; Scotch M; Halden RU, 2021, Unrestricted Online Sharing of High-frequency, High-resolution Data on SARS-CoV-2 in Wastewater to Inform the COVID-19 Public Health Response in Greater Tempe, Arizona, http://dx.doi.org/10.1101/2021.07.29.21261338

Namilae S; Wu Y; Mubayi A; Srinivasan A; Scotch M, 2021, Identifying Mitigation Strategies for COVID-19 Superspreading on Flights using Models that Account for Passenger Movement, http://dx.doi.org/10.48550/arxiv.2106.10313

Adam D; Chen X; Scotch M; MacIntyre CR; Dwyer D; Kok J, 2020, The Molecular Epidemiology and Clinical Phylogenetics of Rhinoviruses among Paediatric Cases in Sydney, Australia., http://dx.doi.org/10.22541/au.160614561.14239652/v1

Islam T; Lahijani MS; Srinivasan A; Namilae S; Mubayi A; Scotch M, 2020, From Bad to Worse: Airline Boarding Changes in Response to COVID-19, http://dx.doi.org/10.48550/arxiv.2006.06403

Holland LA; Kaelin EA; Maqsood R; Estifanos B; Wu LI; Varsani A; Halden RU; Hogue BG; Scotch M; Lim ES, 2020, An 81 base-pair deletion in SARS-CoV-2 ORF7a identified from sentinel surveillance in Arizona (Jan-Mar 2020)., http://dx.doi.org/10.1101/2020.04.17.20069641

Ngonghala CN; Iboi E; Eikenberry S; Scotch M; MacIntyre CR; Bonds MH; Gumel AB, 2020, Mathematical assessment of the impact of non-pharmaceutical interventions on curtailing the 2019 novel Coronavirus, http://dx.doi.org/10.48550/arxiv.2004.07391

Ngonghala C; Iboi E; Eikenberry S; Scotch M; MacIntyre CR; Bonds M; Gumel A, 2020, Mathematical assessment of the impact of non-pharmaceutical interventions on curtailing the 2019 novel Coronavirus, http://dx.doi.org/10.1101/2020.04.15.20066480

Namilae S; Srinivasan A; Mubayi A; Scotch M; Pahle R, 2016, Self-Propelled Pedestrian Dynamics Model: Application to Passenger Movement and Infection Propagation in Airplanes, http://dx.doi.org/10.48550/arxiv.1603.08380

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