By Dr Michael Jonathon Coffey

Book Chapters

Coffey MJ; Ooi CY, 2019, 'Pancreatic Disease, Pediatric', in Encyclopedia of Gastroenterology Second Edition, pp. 39 - 54, http://dx.doi.org/10.1016/B978-0-12-801238-3.66044-0

Coffey MJ; Ooi CY, 2012, 'Pancreatitis in Cystic Fibrosis and CFTR-Related Disorder', in Rodrigo L (ed.), Acute Pancreatitis, InTech, pp. 67 - 90

Journal articles

Taylor NA; Sivam S; van Dorst J; Coffey MJ; Visser S; Haber P; Volovets A; Ooi CY, 2026, 'Stool and symptom testing in ColoREctal Evaluation for Neoplasia in Cystic Fibrosis (SCREEN-CF)', Journal of Cystic Fibrosis, 25, pp. 98 - 103, http://dx.doi.org/10.1016/j.jcf.2025.09.008

Murphy CE; Coffey MJ; Chen Q; Adams S; Ooi CY; van Dorst J, 2025, 'Altered Development of Gut Microbiota and Gastrointestinal Inflammation in Children with Post-Operative Hirschsprung’s Disease', International Journal of Molecular Sciences, 26, http://dx.doi.org/10.3390/ijms262110570

Smith JS; Coffey MJ; Jaffe A; Chuang S; Prentice B; van Dorst J; Ooi CY, 2025, 'Disorders of Gut−Brain Interaction in a Pediatric Cystic Fibrosis Cohort', Pediatric Pulmonology, 60, http://dx.doi.org/10.1002/ppul.71214

Chan C; Coffey M; Murphy C; McKay I; Abdu J; Paida K; Tam RY; Wrigley-Carr H; Prentice B; Owens L; Belessis Y; Chuang S; Jaffe A; van Dorst J; Ooi CY, 2025, 'The Prevalence of Polyketide Synthase-Positive E. coli in Cystic Fibrosis', Microorganisms, 13, http://dx.doi.org/10.3390/microorganisms13030681

Perron JE; Uther P; Coffey MJ; Lovell-Simons A; Bartlett AW; McKay A; Garg M; Lucas S; Cichero J; Dobrescu I; Motta A; Taylor S; Kennedy SE; Ooi CY, 2025, 'Are serious games seriously good at preparing students for clinical practice?: A randomized controlled trial', Medical Teacher, 47, pp. 126 - 133, http://dx.doi.org/10.1080/0142159X.2024.2323179

Pushpakumara B; Becirovic R; van Dorst J; Coffey M; Halim J; Beheshti B; Argha A; Alinejad-Rokny H; Ooi C, 2025, '16 Artificial intelligence integrating gut microbiome multi-omics to predict clinical outcomes in children with cystic fibrosis', Journal of Cystic Fibrosis, 24, pp. s9, http://dx.doi.org/10.1016/s1569-1993(25)01636-4

Smith JS; van Dorst J; Coffey MJ; Ooi CY, 2025, 'Anxiety in the Pediatric Cystic Fibrosis Population: Evaluation of a Younger Cohort.', Pediatr Pulmonol, 60, pp. e71181, http://dx.doi.org/10.1002/ppul.71181

Krishnan U; Tang TC; Coffey MJ; Leach ST, 2024, 'Reply to “Proton pump inhibitors and esophageal atresia: Too early to change clinical practice”', Journal of Pediatric Gastroenterology and Nutrition, 79, pp. 1218 - 1220, http://dx.doi.org/10.1002/jpn3.12374

Ooi CY; Terlizzi V; Coffey MJ, 2024, 'Cystic fibrosis transmembrane conductance regulator (CFTR) variants and CFTR function in patients with pancreatitis', Pancreatology, 24, pp. 969 - 970, http://dx.doi.org/10.1016/j.pan.2024.07.009

Traini I; Chan SY; Menzies J; Hughes J; Coffey MJ; McKay IR; Ooi CY; Leach ST; Krishnan U, 2024, 'Intestinal dysbiosis and inflammation in children with repaired esophageal atresia', Journal of Pediatric Gastroenterology and Nutrition, 78, pp. 43 - 51, http://dx.doi.org/10.1002/jpn3.12053

Tan SMJ; Coffey MJ; Blazek K; Sitaram N; Dobrescu I; Motta A; Chuang S; Ooi CY, 2024, 'Serious games vs. traditional tutorials in the pandemic: a randomised controlled trial', Frontiers in Medicine, 11, http://dx.doi.org/10.3389/fmed.2024.1424024

McKay I; van Dorst J; Katz T; Doumit M; Prentice B; Owens L; Belessis Y; Chuang S; Jaffe A; Thomas T; Coffey M; Ooi CY, 2023, 'Diet and the gut-lung axis in cystic fibrosis – direct & indirect links', Gut Microbes, 15, pp. 2156254, http://dx.doi.org/10.1080/19490976.2022.2156254

Traini I; Chan SY; Menzies J; Hughes J; Coffey MJ; Katz T; McKay IR; Ooi CY; Leach ST; Krishnan U, 2022, 'Evaluating the Dietary Intake of Children with Esophageal Atresia: A Prospective, Controlled, Observational Study', Journal of Pediatric Gastroenterology and Nutrition, 75, pp. 221 - 226, http://dx.doi.org/10.1097/MPG.0000000000003498

Permain J; Appleton L; Ho SSC; Coffey M; Ooi CY; Keenan JI; Day AS, 2022, 'Children With Cystic Fibrosis Have Elevated Levels of Fecal Chitinase-3-like-1', Journal of Pediatric Gastroenterology and Nutrition, 75, pp. 48 - 51, http://dx.doi.org/10.1097/MPG.0000000000003477

Tam RY; van Dorst JM; McKay I; Coffey M; Ooi CY, 2022, 'Intestinal Inflammation and Alterations in the Gut Microbiota in Cystic Fibrosis: A Review of the Current Evidence, Pathophysiology and Future Directions', Journal of Clinical Medicine, 11, http://dx.doi.org/10.3390/jcm11030649

Coffey MJ; Garg M; Homaira N; Jaffe A; Ooi CY, 2021, 'A systematic cochrane review of probiotics for people with cystic fibrosis', Paediatric Respiratory Reviews, 39, pp. 61 - 64, http://dx.doi.org/10.1016/j.prrv.2020.06.020

Perron JE; Coffey MJ; Lovell-Simons A; Dominguez L; King ME; Ooi CY, 2021, 'Resuscitating cardiopulmonary resuscitation training in a virtual reality: Prospective interventional study', Journal of Medical Internet Research, 23, http://dx.doi.org/10.2196/22920

Coffey MJ; Ooi CY, 2020, 'Paediatric pancreatic diseases', Journal of Paediatrics and Child Health, 56, pp. 1694 - 1701, http://dx.doi.org/10.1111/jpc.14688

Ting A; Katz T; Sutherland R; Liu V; Tong CW; Gao Y; Lemberg DA; Krishnan U; Gupta N; Coffey MJ; Ooi CY, 2020, 'Evaluating the Dietary Intakes of Energy, Macronutrients, Sugar, Fiber, and Micronutrients in Children With Celiac Disease', Journal of Pediatric Gastroenterology and Nutrition, 71, pp. 246 - 251, http://dx.doi.org/10.1097/MPG.0000000000002743

Coffey MJ; Mckay IR; Doumit M; Chuang S; Adams S; Stelzer-Braid S; Waters SA; Kasparian NA; Thomas T; Jaffe A; Katz T; Ooi CY, 2020, 'Evaluating the Alimentary and Respiratory Tracts in Health and disease (EARTH) research programme: a protocol for prospective, longitudinal, controlled, observational studies in children with chronic disease at an Australian tertiary paediatric hospital', BMJ Open, 10, pp. e033916, http://dx.doi.org/10.1136/bmjopen-2019-033916

Coffey MJ; Garg M; Homaira N; Jaffe A; Ooi CY, 2020, 'Probiotics for people with cystic fibrosis', Cochrane Database of Systematic Reviews, 2020, pp. cd012949, http://dx.doi.org/10.1002/14651858.CD012949.pub2

Singh H; Coffey MJ; Ooi CY, 2020, 'Cystic Fibrosis-related Liver Disease is Associated With Increased Disease Burden and Endocrine Comorbidities.', J Pediatr Gastroenterol Nutr, 70, pp. 796 - 800, http://dx.doi.org/10.1097/MPG.0000000000002694

Coffey MJ; Low I; Stelzer-Braid S; Wemheuer B; Garg M; Thomas T; Jaffe A; Rawlinson WD; Ooi CY, 2020, 'The intestinal virome in children with cystic fibrosis differs from healthy controls.', PLoS One, 15, pp. e0233557, http://dx.doi.org/10.1371/journal.pone.0233557

Coffey MJ; Nielsen S; Wemheuer B; Kaakoush NO; Garg M; Needham B; Pickford R; Jaffe A; Thomas T; Ooi CY, 2019, 'Gut Microbiota in Children With Cystic Fibrosis: A Taxonomic and Functional Dysbiosis', Scientific Reports, 9, pp. 18593, http://dx.doi.org/10.1038/s41598-019-55028-7

Tan SMJ; Coffey MJ; Ooi CY, 2019, 'Differences in clinical outcomes of paediatric cystic fibrosis patients with and without meconium ileus', Journal of Cystic Fibrosis, 18, pp. 857 - 862, http://dx.doi.org/10.1016/j.jcf.2019.09.008

Coffey MJ; Garg M; Homaira N; Jaffe A; Ooi CY, 2018, 'Probiotics for people with cystic fibrosis', Cochrane Database of Systematic Reviews, 2018, http://dx.doi.org/10.1002/14651858.CD012949

Garg M; Leach ST; Pang T; Needham B; Coffey MJ; Katz T; Strachan R; Widger J; Field P; Belessis Y; Chuang S; Day AS; Jaffe A; Ooi CY, 2018, 'Age-related levels of fecal M2-pyruvate kinase in children with cystic fibrosis and healthy children 0 to 10 years old', Journal of Cystic Fibrosis, 17, pp. 109 - 113, http://dx.doi.org/10.1016/j.jcf.2017.07.011

Garg M; Leach ST; Coffey MJ; Katz T; Strachan R; Pang T; Needham B; Lui K; Ali F; Day AS; Appleton L; Moeeni V; Jaffe A; Ooi CY, 2017, 'Age-dependent variation of fecal calprotectin in cystic fibrosis and healthy children', Journal of Cystic Fibrosis, 16, pp. 631 - 636, http://dx.doi.org/10.1016/j.jcf.2017.03.010

Coffey MJ; Whitaker V; Gentin N; Junek R; Shalhoub C; Nightingale S; Hilton J; Wiley V; Wilcken B; Gaskin KJ; Ooi CY, 2017, 'Differences in Outcomes between Early and Late Diagnosis of Cystic Fibrosis in the Newborn Screening Era', Obstetrical and Gynecological Survey, 72, pp. 328 - 330, http://dx.doi.org/10.1097/01.ogx.0000520558.46496.57

Coffey MJ; Ooi CY, 2016, 'Ode to the exocrine pancreas', Journal of Cystic Fibrosis, 15, pp. 557 - 558, http://dx.doi.org/10.1016/j.jcf.2016.07.005

Bierma MJ; Coffey MJ; Nightingale S; van Rheenen PF; Ooi CY, 2016, 'Predicting severe acute pancreatitis in children based on serum lipase and calcium: A multicentre retrospective cohort study', Pancreatology, 16, pp. 529 - 534, http://dx.doi.org/10.1016/j.pan.2016.04.005

Bierma M; Coffey MJ; Nightingale S; van Rheenen P; Ooi CY, 2016, 'Mo1433 Predicting Severe Acute Pancreatitis in Children Based on Serum Lipase and Calcium: A Multicentre Retrospective Cohort Study', Gastroenterology, 150, pp. s711, http://dx.doi.org/10.1016/s0016-5085(16)32424-6

Coffey MJ; Nightingale S; Ooi CY, 2014, 'Increased Fecal Fat and Protein Intolerance', JOURNAL OF PEDIATRIC GASTROENTEROLOGY AND NUTRITION, 58, pp. E42 - E42, http://dx.doi.org/10.1097/MPG.0000000000000315

Coffey MJ; Nightingale S; Ooi CY, 2014, 'Authors’ Response', Journal of Pediatric Gastroenterology and Nutrition, 58, pp. e42 - e42, http://dx.doi.org/10.1097/MPG.0000000000000308

Coffey MJ; Nightingale S; Ooi CY, 2014, 'Diagnosing acute pancreatitis in children: What is the diagnostic yield and concordance for serum pancreatic enzymes and imaging within 96 h of presentation?', Pancreatology, 14, pp. 251 - 256, http://dx.doi.org/10.1016/j.pan.2014.05.383

Meyer A; Coffey MJ; Oliver MR; Ooi CY, 2013, 'Contrasts and comparisons between childhood and adult onset acute pancreatitis', Pancreatology, 13, pp. 429 - 435, http://dx.doi.org/10.1016/j.pan.2013.06.005

Coffey MJ; Nightingale S; Ooi CY, 2013, 'Predicting a biliary aetiology in paediatric acute pancreatitis', Archives of Disease in Childhood, 98, pp. 965 - 969, http://dx.doi.org/10.1136/archdischild-2013-304462

Coffey MJ; Nightingale S; Ooi CY, 2013, 'Serum Lipase as an Early Predictor of Severity in Pediatric Acute Pancreatitis', Journal of Pediatric Gastroenterology and Nutrition, 56, pp. 602 - 608, http://dx.doi.org/10.1097/MPG.0b013e31828b36d8

Noyes M; Coffey MJ; Brown DM; Mesghali H, 2010, 'Acute compartment syndrome of the forearm following autologous blood reinfusion: A case report', Hand, 5, pp. 303 - 306, http://dx.doi.org/10.1007/s11552-009-9237-0

Coffey MJ; Scheker LR; Thirkannad SM, 2009, 'Total distal radioulnar joint arthroplasty in adults with symptomatic madelung's deformity', Hand, 4, pp. 427 - 431, http://dx.doi.org/10.1007/s11552-009-9182-y

Coffey MJ; Fazlur Rahman M; Thirkannad SM, 2008, 'Pediatric ganglion cysts of the hand and wrist: An epidemiologic analysis', Hand, 3, pp. 359 - 362, http://dx.doi.org/10.1007/s11552-008-9122-2

Conference Papers

McKay IR; Coffey MJ; Doumit M; Bramley L; Sharp M; Kasparian N; Chuang S; Stelzer-Braid S; Waters S; Thomas T; Jaffe A; Katz TE; Ooi CY, 2019, 'A GUT FEELING: CORRELATING DIETARY INTAKE WITH THE GASTROINTESTINAL AND RESPIRATORY MICROBIOTA IN CYSTIC FIBROSIS', in PEDIATRIC PULMONOLOGY, WILEY, pp. S261 - S262, https://www.webofscience.com/api/gateway?GWVersion=2&SrcApp=PARTNER_APP&SrcAuth=LinksAMR&KeyUT=WOS:000484544000375&DestLinkType=FullRecord&DestApp=ALL_WOS&UsrCustomerID=891bb5ab6ba270e68a29b250adbe88d1

Coffey MJ; Zhong L; Jaffe A; Ooi CY; Waters S, 2019, 'THE INTESTINAL PROTEOME IN CHILDREN WITH CYSTIC FIBROSIS DIFFERS FROM HEALTHY CONTROLS', in PEDIATRIC PULMONOLOGY, WILEY, pp. S265 - S265, https://www.webofscience.com/api/gateway?GWVersion=2&SrcApp=PARTNER_APP&SrcAuth=LinksAMR&KeyUT=WOS:000484544000385&DestLinkType=FullRecord&DestApp=ALL_WOS&UsrCustomerID=891bb5ab6ba270e68a29b250adbe88d1

Singh H; Coffey MJ; Ooi CY, 2019, 'CLINICAL OUTCOMES IN AUSTRALIAN CHILDREN WITH CYSTIC FIBROSIS LIVER DISEASE: A NATIONWIDE RETROSPECTIVE REVIEW WITH MATCHED CONTROLS', in GASTROENTEROLOGY, W B SAUNDERS CO-ELSEVIER INC, CA, San Diego, pp. S136 - S137, presented at Digestive Disease Week (DDW), CA, San Diego, 18 May 2019 - 21 May 2019

Coffey MJ; Nielsen S; Wemheuer B; Garg M; Needham B; Jaffe A; Thomas T; Ooi CY, 2019, 'TAXONOMIC AND FUNCTIONAL INTESTINAL DYSBIOSIS IN CHILDREN WITH CYSTIC FIBROSIS', in GASTROENTEROLOGY, W B SAUNDERS CO-ELSEVIER INC, CA, San Diego, pp. S895 - S895, presented at Digestive Disease Week (DDW), CA, San Diego, 18 May 2019 - 21 May 2019

Coffey MJ; Zhong L; Jaffe A; Ooi CY; Waters S, 2019, 'THE HUMAN INTESTINAL PROTEOME IN CHILDREN WITH CYSTIC FIBROSIS', in GASTROENTEROLOGY, W B SAUNDERS CO-ELSEVIER INC, CA, San Diego, pp. S1153 - S1153, presented at Digestive Disease Week (DDW), CA, San Diego, 18 May 2019 - 21 May 2019, https://www.webofscience.com/api/gateway?GWVersion=2&SrcApp=PARTNER_APP&SrcAuth=LinksAMR&KeyUT=WOS:000467106004413&DestLinkType=FullRecord&DestApp=ALL_WOS&UsrCustomerID=891bb5ab6ba270e68a29b250adbe88d1

Cone S; Larkin G; Poulton C; Wemheuer B; Thomas T; Lemberg D; Gupta N; Leach ST; Coffey MJ; Ooi CY, 2018, 'Functional dysbiosis of the gut microbiota in childhood irritable bowel syndrome', in JOURNAL OF GASTROENTEROLOGY AND HEPATOLOGY, WILEY, pp. 144 - 145, https://www.webofscience.com/api/gateway?GWVersion=2&SrcApp=PARTNER_APP&SrcAuth=LinksAMR&KeyUT=WOS:000530647800253&DestLinkType=FullRecord&DestApp=ALL_WOS&UsrCustomerID=891bb5ab6ba270e68a29b250adbe88d1

Coffey MJ; Zhong L; Jaffe A; Ooi CY; Waters S, 2018, 'The human intestinal proteome in children with cystic fibrosis', in JOURNAL OF GASTROENTEROLOGY AND HEPATOLOGY, WILEY, pp. 144 - 144, https://www.webofscience.com/api/gateway?GWVersion=2&SrcApp=PARTNER_APP&SrcAuth=LinksAMR&KeyUT=WOS:000530647800252&DestLinkType=FullRecord&DestApp=ALL_WOS&UsrCustomerID=891bb5ab6ba270e68a29b250adbe88d1

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