By Dr Michael Payne

Preprints

Smith SAM; Rockett RJ; Oftadeh S; Tam KK-G; Payne M; Golubchik T; Sintchenko V, 2026, Culture-independent identification and serotyping of Streptococcus pneumoniae by targeted metagenomics in pleural fluid samples, http://dx.doi.org/10.64898/2026.04.13.26350812

Payne M; Tam KK-G; Rockett R; Basile K; Bowden R; Sintchenko V; Kok J; Golubchik T, 2026, DAMPA - accelerated and simplified design of probe panels for targeted metagenomics using pangenome graphs, http://dx.doi.org/10.64898/2026.05.15.26352859

Payne M; Xu Z; Hu D; Kaur S; Octavia S; Sintchenko V; Lan R, 2023, Genomic epidemiology and multilevel genome typing of Bordetella pertussis, http://dx.doi.org/10.1101/2023.04.26.538362

Zhang X; Payne M; Nguyen T; Kaur S; Lan R, 2021, Cluster-specific gene markers enhance Shigella and Enteroinvasive Escherichia coli in silico serotyping, http://dx.doi.org/10.1101/2021.01.30.428723

Kaur S; Payne M; Partridge SR; Sintchenko V; Lan R, A dissection of the genomic antimicrobial resistance epidemiology of Salmonella Typhimurium, http://dx.doi.org/10.1101/2024.05.12.593721

Cheney L; Payne M; Kaur S; McKew G; Lan R, Characterising Staphylococcus aureus genomic epidemiology with Multilevel Genome Typing, http://dx.doi.org/10.1101/2024.05.09.593273

Luo L; Wang H; Payne M; Liang C; Bai L; Zheng H; Zhang Z; Zhang L; Zhang X; yan G; Zou N; Chen X; Wan Z; Xiong Y; Lan R; Li Q, Comparative genomics of Chinese and international isolates of Escherichia albertii: population structure and evolution of virulence and antimicrobial resistance, http://dx.doi.org/10.1101/2021.02.01.429068

Luu LDW; Payne M; Zhang X; Luo L; Lan R, Development and comparison of a novel multiple cross displacement amplification (MCDA) assay with other nucleic acid amplification methods for SARS-CoV-2 detection, http://dx.doi.org/10.1101/2020.10.03.20206193

Payne M; Hu D; Wang Q; Sullivan G; Graham RM; Rathnayake IU; Jennison AV; Sintchenko V; Lan R, DODGE: Automated point source bacterial outbreak detection using cumulative long term genomic surveillance, http://dx.doi.org/10.1101/2024.01.21.24301506

Luo L; Payne M; Kaur S; Hu D; Cheney L; Octavia S; Wang Q; Tanaka MM; Sintchenko V; Lan R, Elucidation of global and local genomic epidemiology of Salmonella enterica serovar Enteritidis through multilevel genome typing, http://dx.doi.org/10.1101/2020.06.30.169953

Luo L; Payne M; Wang Q; Kaur S; Rathnayake IU; Graham R; Gall M; Draper J; Martinez E; Octavia S; Tanaka MM; Jennison AV; Sintchenko V; Lan R, Genomic epidemiology and multilevel genome typing of Australian Salmonella enterica serovar Enteritidis, http://dx.doi.org/10.1101/2022.05.18.492204

Kaur S; Payne M; Luo L; Octavia S; Tanaka MM; Sintchenko V; Lan R, MGTdb: A web service and database for studying the global and local genomic epidemiology of bacterial pathogens, http://dx.doi.org/10.1101/2022.06.14.496187

Wu R; Kaur S; Payne M; Zhang L; Lan R, Multilevel HierCC typing scheme for global genomic epidemiology and antimicrobial resistance surveillance of Campylobacter jejuni, http://dx.doi.org/10.64898/2025.12.17.694998

Poudyal P; Sy B; Mediati DG; Payne M; Nandel V; Norris D; McAteer S; Ullah A; Li S; Menz L; Waters SA; Dallman TJ; Baker M; Lan R; Gally D; Tree J, Phage-encoded sRNA counteracts xenogenic silencing in pathogenic E. coli, http://dx.doi.org/10.1101/2025.11.27.690950

Cheney L; Payne M; Kaur S; Lan R, SaLTy: a novel Staphylococcus aureus Lineage Typer, http://dx.doi.org/10.1101/2023.02.03.527095

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