By Dr Minh Ngoc Tran

Journal articles

Tan E; Tran M; Rademaker M; Lin FPY, 2024, 'Bridging AI development with clinical relevance—A scoping review of skin cancer models since CLEAR Derm. Where to next?', Australasian Journal of Dermatology, 65, pp. e56 - e58, http://dx.doi.org/10.1111/ajd.14207

Patrick R; Naval-Sanchez M; Deshpande N; Huang Y; Zhang J; Chen X; Yang Y; Tiwari K; Esmaeili M; Tran M; Mohamed AR; Wang B; Xia D; Ma J; Bayliss J; Wong K; Hun ML; Sun X; Cao B; Cottle DL; Catterall T; Barzilai-Tutsch H; Troskie R-L; Chen Z; Wise AF; Saini S; Soe YM; Kumari S; Sweet MJ; Thomas HE; Smyth IM; Fletcher AL; Knoblich K; Watt MJ; Alhomrani M; Alsanie W; Quinn KM; Merson TD; Chidgey AP; Ricardo SD; Yu D; Jardé T; Cheetham SW; Marcelle C; Nilsson SK; Nguyen Q; White MD; Nefzger CM, 2024, 'The activity of early-life gene regulatory elements is hijacked in aging through pervasive AP-1-linked chromatin opening', Cell Metabolism, 36, pp. 1858 - 1881.e23, http://dx.doi.org/10.1016/j.cmet.2024.06.006

Pham D; Tan X; Balderson B; Xu J; Grice LF; Yoon S; Willis EF; Tran M; Lam PY; Raghubar A; Kalita-de Croft P; Lakhani S; Vukovic J; Ruitenberg MJ; Nguyen QH, 2023, 'Robust mapping of spatiotemporal trajectories and cell–cell interactions in healthy and diseased tissues', Nature Communications, 14, pp. 7739, http://dx.doi.org/10.1038/s41467-023-43120-6

Tu WJ; Melino M; Dunn J; McCuaig RD; Bielefeldt-Ohmann H; Tsimbalyuk S; Forwood JK; Ahuja T; Vandermeide J; Tan X; Tran M; Nguyen Q; Zhang L; Nam A; Pan L; Liang Y; Smith C; Lineburg K; Nguyen TH; Sng JDJ; Tong ZWM; Chew KY; Short KR; Le Grand R; Seddiki N; Rao S, 2023, 'In vivo inhibition of nuclear ACE2 translocation protects against SARS-CoV-2 replication and lung damage through epigenetic imprinting', Nature Communications, 14, pp. 3680, http://dx.doi.org/10.1038/s41467-023-39341-4

Thomson E; Tran M; Robevska G; Ayers K; van der Bergen J; Bhaskaran PG; Haan E; Cereghini S; Vash-Margita A; Margetts M; Hensley A; Nguyen Q; Sinclair A; Koopman P; Pelosi E, 2023, 'Functional genomics analysis identifies loss of HNF1B function as a cause of Mayer–Rokitansky–Küster–Hauser syndrome', Human Molecular Genetics, 32, pp. 1032 - 1047, http://dx.doi.org/10.1093/hmg/ddac262

Shojaei M; Shamshirian A; Monkman J; Grice L; Tran M; Tan CW; Teo SM; Rodrigues Rossi G; McCulloch TR; Nalos M; Raei M; Razavi A; Ghasemian R; Gheibi M; Roozbeh F; Sly PD; Spann KM; Chew KY; Zhu Y; Xia Y; Wells TJ; Senegaglia AC; Kuniyoshi CL; Franck CL; dos Santos AFR; Noronha LD; Motamen S; Valadan R; Amjadi O; Gogna R; Madan E; Alizadeh-Navaei R; Lamperti L; Zuñiga F; Nova-Lamperti E; Labarca G; Knippenberg B; Herwanto V; Wang Y; Phu A; Chew T; Kwan T; Kim K; Teoh S; Pelaia TM; Kuan WS; Jee Y; Iredell J; O’Byrne K; Fraser JF; Davis MJ; Belz GT; Warkiani ME; Gallo CS; Souza-Fonseca-Guimaraes F; Nguyen Q; Mclean A; Kulasinghe A; Short KR; Tang B, 2023, 'IFI27 transcription is an early predictor for COVID-19 outcomes, a multi-cohort observational study', Frontiers in Immunology, 13, http://dx.doi.org/10.3389/fimmu.2022.1060438

Tan X; Grice LF; Tran M; Mulay O; Monkman J; Blick T; Vo T; Almeida AC; da Silva Motta J; de Moura KF; Machado‐Souza C; Souza‐Fonseca‐Guimaraes P; Baena CP; de Noronha L; Guimaraes FSF; Luu HN; Drennon T; Williams S; Stern J; Uytingco C; Pan L; Nam A; Cooper C; Short K; Belz GT; Souza‐Fonseca‐Guimaraes F; Kulasinghe A; Nguyen Q, 2023, 'A robust platform for integrative spatial multi‐omics analysis to map immune responses to SARS‐CoV‐2 infection in lung tissues', Immunology, 170, pp. 401 - 418, http://dx.doi.org/10.1111/imm.13679

Tran M; Yoon S; Teoh M; Andersen S; Lam PY; Purdue BW; Raghubar A; Hanson SJ; Devitt K; Jones K; Walters S; Monkman J; Kulasinghe A; Tuong ZK; Soyer HP; Frazer IH; Nguyen Q, 2022, 'A robust experimental and computational analysis framework at multiple resolutions, modalities and coverages', Frontiers in Immunology, 13, pp. 911873, http://dx.doi.org/10.3389/fimmu.2022.911873

Naval-Sanchez M; Deshpande N; Tran M; Zhang J; Alhomrani M; Alsanie W; Nguyen Q; Nefzger CM, 2022, 'Benchmarking of ATAC Sequencing Data From BGI’s Low-Cost DNBSEQ-G400 Instrument for Identification of Open and Occupied Chromatin Regions', Frontiers in Molecular Biosciences, 9, pp. 900323, http://dx.doi.org/10.3389/fmolb.2022.900323

Tan X; Su A; Tran M; Nguyen Q, 2020, 'SpaCell: integrating tissue morphology and spatial gene expression to predict disease cells', Bioinformatics, 36, pp. 2293 - 2294, http://dx.doi.org/10.1093/bioinformatics/btz914

Ngoc MT; Park DC; Tran M, 2018, 'Centroid Neural Network with Pairwise Constraints for Semi-supervised Learning', Neural Processing Letters, 48, pp. 1721 - 1747, http://dx.doi.org/10.1007/s11063-018-9794-8

Conference Papers

Tran M; Su A; Lee H; Cruz R; Pflieger L; Dean A; Nguyen Q; Ji H; Rhodes T, 2020, '665 Spatial single-cell analysis of colorectal cancer tumour using multiplexed imaging mass cytometry', in Regular and young investigator award abstracts, BMJ Publishing Group Ltd, pp. A399.1 - A399, presented at 35th Anniversary Annual Meeting (SITC 2020), http://dx.doi.org/10.1136/jitc-2020-sitc2020.0665

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