Select Publications
Journal articles
2024, 'Bridging AI development with clinical relevance—A scoping review of skin cancer models since CLEAR Derm. Where to next?', Australasian Journal of Dermatology, 65, pp. e56 - e58, http://dx.doi.org/10.1111/ajd.14207
,2024, 'The activity of early-life gene regulatory elements is hijacked in aging through pervasive AP-1-linked chromatin opening', Cell Metabolism, 36, pp. 1858 - 1881.e23, http://dx.doi.org/10.1016/j.cmet.2024.06.006
,2023, 'Robust mapping of spatiotemporal trajectories and cell–cell interactions in healthy and diseased tissues', Nature Communications, 14, pp. 7739, http://dx.doi.org/10.1038/s41467-023-43120-6
,2023, 'In vivo inhibition of nuclear ACE2 translocation protects against SARS-CoV-2 replication and lung damage through epigenetic imprinting', Nature Communications, 14, pp. 3680, http://dx.doi.org/10.1038/s41467-023-39341-4
,2023, 'Functional genomics analysis identifies loss of HNF1B function as a cause of Mayer–Rokitansky–Küster–Hauser syndrome', Human Molecular Genetics, 32, pp. 1032 - 1047, http://dx.doi.org/10.1093/hmg/ddac262
,2023, 'IFI27 transcription is an early predictor for COVID-19 outcomes, a multi-cohort observational study', Frontiers in Immunology, 13, http://dx.doi.org/10.3389/fimmu.2022.1060438
,2023, 'A robust platform for integrative spatial multi‐omics analysis to map immune responses to SARS‐CoV‐2 infection in lung tissues', Immunology, 170, pp. 401 - 418, http://dx.doi.org/10.1111/imm.13679
,2022, 'A robust experimental and computational analysis framework at multiple resolutions, modalities and coverages', Frontiers in Immunology, 13, pp. 911873, http://dx.doi.org/10.3389/fimmu.2022.911873
,2022, 'Benchmarking of ATAC Sequencing Data From BGI’s Low-Cost DNBSEQ-G400 Instrument for Identification of Open and Occupied Chromatin Regions', Frontiers in Molecular Biosciences, 9, pp. 900323, http://dx.doi.org/10.3389/fmolb.2022.900323
,2020, 'SpaCell: integrating tissue morphology and spatial gene expression to predict disease cells', Bioinformatics, 36, pp. 2293 - 2294, http://dx.doi.org/10.1093/bioinformatics/btz914
,2018, 'Centroid Neural Network with Pairwise Constraints for Semi-supervised Learning', Neural Processing Letters, 48, pp. 1721 - 1747, http://dx.doi.org/10.1007/s11063-018-9794-8
,Conference Papers
2020, '665 Spatial single-cell analysis of colorectal cancer tumour using multiplexed imaging mass cytometry', in Regular and young investigator award abstracts, BMJ Publishing Group Ltd, presented at 35th Anniversary Annual Meeting (SITC 2020), http://dx.doi.org/10.1136/jitc-2020-sitc2020.0665
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