Select Publications

Book Chapters

Han Z; Lin X; Di P; Xiao C; Onizuka M; Liu J; Mao R; Qin J, 2026, 'Automatic String Data Validation with Pattern Discovery', in , pp. 608 - 625, http://dx.doi.org/10.1007/978-981-92-0369-7_38

Journal articles

Liu X; Wang J; Yuan X; Sun J; Dong G; Di P; Wang W; Wang D, 2026, 'Prompting Frameworks for Large Language Models: A Survey', ACM Computing Surveys, 58, pp. 1 - 38, http://dx.doi.org/10.1145/3789253

Xu T; Li C; Xu Z; Jiang Y; Yao Y; Zhu X; Xu F; Di P; Xu C; Su Z, 2026, 'Streamlining Repository Tasks with Effective Snippet Retrieval', ACM Transactions on Software Engineering and Methodology, http://dx.doi.org/10.1145/3821433

Lv Z; Li C; Jiang R; Jia X; Di P; Xiao Y; Chen W, 2026, 'Single-nucleus RNA sequencing reveals the developmental trajectory and transcriptional regulatory networks of trichomes in Artemisia annua', Journal of Experimental Botany, pp. erag287, http://dx.doi.org/10.1093/jxb/erag287

Wang F; Zhao Q; Li S; Di P; Li W; Gao B; Zang Z; Sun R; Lei X; Liu Y; Wang X; Zhang J, 2026, 'Reconstitution of cannabidiol biosynthesis pathway in Nicotiana benthaminana through multigene synthetic engineering', INDUSTRIAL CROPS AND PRODUCTS, 246, http://dx.doi.org/10.1016/j.indcrop.2026.123319

Li T; Yan Z; Liu J; Di P; Zhang X, 2026, 'Guiding LLM-Based Loop Invariant Synthesis via Feedback on Local Reasoning Errors', ACM Transactions on Programming Languages and Systems, 48, http://dx.doi.org/10.1145/3806652

Zhang L; Wang P; Lian J; Xu J; Zhang X; Sui Y; Li W; Zhang N; Piao X; Wang Y; Yan Y; Zhang J; Di P, 2026, 'Opposing regulatory functions of SmNAC22 and SmNAC58 underlie high light induced phenolic acid accumulation in Salvia miltiorrhiza', INDUSTRIAL CROPS AND PRODUCTS, 244, http://dx.doi.org/10.1016/j.indcrop.2026.123188

Xu J; Wang P; Lian J; Zhang L; Zhang X; Sui Y; Chen J; Wei H; Wang Y; Cui R; Li W; Zhang N; Yan Y; Zhang J; Di P, 2026, 'Identification and Validation of NAC Transcription Factors Enhancing Phenolic Acid Production in Perilla frutescens', Plants, 15, pp. 922, http://dx.doi.org/10.3390/plants15060922

Zhang X; Zhang J; Pan Z; Wang P; Zhang L; Xu J; Lian J; Wang Y; Zhang X; Sui Y; Yan Y; Zhang J; Di P, 2026, 'Comprehensive Genome-Wide Analysis of the AP2/ERF Transcription Factor Family and Examination of Potential Regulators CpERF140 and CpERF138 in the Biosynthesis of Lobetyolin in Codonopsis pilosula', Plants, 15, pp. 530, http://dx.doi.org/10.3390/plants15040530

Liu X; Di P; Li C; Sun J; Wang J, 2026, 'Efficient Function Orchestration for Large Language Models', IEEE Transactions on Software Engineering, 52, pp. 411 - 427, http://dx.doi.org/10.1109/TSE.2025.3619112

Guo Y; Liu P; Ma W; Deng Z; Zhu X; Di P; Xiao X; Wen S, 2026, 'MCPXKIT: the Unified Toolkit for Analyzing Model Context Protocol Security', IEEE Transactions on Dependable and Secure Computing, http://dx.doi.org/10.1109/TDSC.2026.3695553

Li S; Zhao Q; Wang F; Sun R; Deyholos MK; Di P; Lei X; Liu Y; Zhang J, 2026, 'Genome-wide characterization of MADS-box genes reveals CsaSOC1 as a key regulator of flowering in Cannabis sativa L.', Plant Cell Reports, 45, pp. 187, http://dx.doi.org/10.1007/s00299-026-03871-0

Lian J; Wang P; Xu J; Zhang L; Zhang X; Chen J; Song X; Cui R; Yan Y; Piao X; Di P, 2026, 'Genome-wide identification and functional analysis of GRAS transcription factors in Perilla frutescens reveals the positive role of PfGRAS70 in regulating rosmarinic acid biosynthesis', Plant Physiology and Biochemistry, 232, pp. 111180, http://dx.doi.org/10.1016/j.plaphy.2026.111180

Wang P; Lian J; Sui Y; Wang Y; Yan Y; Jiao Z; Wang Y; Piao X; Chen C; Di P, 2026, 'Identification and analysis of WRKY transcription factors related to triterpenoid biosynthesis in Panax japonicus', Industrial Crops and Products, 239, pp. 122420, http://dx.doi.org/10.1016/j.indcrop.2025.122420

Wang P; Li J; Wei H; Di P; Sui Y; Yan Y; Han M; Zhang J, 2026, 'The ArMAPK5-ArbHLH3-Ar4CL3 module is associated with salicylic acid-induced phenolic biosynthesis in Agastache rugosa', Plant Physiology and Biochemistry, 237, pp. 111499, http://dx.doi.org/10.1016/j.plaphy.2026.111499

Li Y; Di P; Zou Y; Li X; Zhang K; Wang J; Wang Y; Qiu S; Tan J; Chen W; Li B; Li T; Zhang L; Xiao Y; Chen W; Chen J, 2026, 'The transcriptional regulatory network involved in periderm-specific tanshinones biosynthesis in Salvia miltiorrhiza root', Acta Pharmaceutica Sinica B, 16, pp. 1568 - 1583, http://dx.doi.org/10.1016/j.apsb.2025.12.018

Zhang X; Wang P; Zhang L; Xu J; Lian J; Chen J; Wang Y; Wei H; Wang Y; Yan Y; Zhang J; Di P, 2025, 'Genome-wide analysis of the WRKY transcription factor family in Perilla frutescens and the positive role of PfWRKY38, PfWRKY59, and PfWRKY78 in regulating rosmarinic acid biosynthesis', INDUSTRIAL CROPS AND PRODUCTS, 238, http://dx.doi.org/10.1016/j.indcrop.2025.122338

Zhao J; Meng X; Di P; Rong J; Xun H; Zheng S; Li J; Zhang J; Wang Y-P, 2025, 'Conservation and Remodeling of Alternative Splicing Landscapes in the Evolution of Panax', Plants, 14, pp. 3301, http://dx.doi.org/10.3390/plants14213301

Lei X-J; Zhao J; Rong J-B; Zhang M-Y; Jia W-H; Zhang J; Chen X; Hu H; Wu J; Jiang Y-J; Feng L-W; Wang Y-F; Deyholos MK; Su L-Y; Liu H; Di P; Zhang J; Xiong A-S; Wang Y-P, 2025, 'Telomere-to-telomere genome assembly of yellow-fruited allotetraploid American ginseng (Panax quinquefolius L.) provides insights into flavonoid biosynthesis', Horticulture Research, 12, pp. uhaf198, http://dx.doi.org/10.1093/hr/uhaf198

Wang Y; Wang S; Meng X; Wang P; Lin H; Di P; Wang Y, 2025, 'Genome-Wide Identification of the AP2/ERF Gene Family and Functional Analysis of PgAP2/ERF187 Under Cold Stress in Panax ginseng C. A. Meyer', Plants, 14, pp. 2922, http://dx.doi.org/10.3390/plants14182922

Zhao J; Li J; Lei X; Di P; Xun H; Zhang Z; Zhang J; Meng X; Wang Y, 2025, 'Dynamic Coordination of Alternative Splicing and Subgenome Expression Bias Underlies Rusty Root Symptom Response in Panax ginseng', PLANTS-BASEL, 14, http://dx.doi.org/10.3390/plants14142120

Wang Y; Wang P; Di P; Wang Y, 2025, 'Genome-wide identification of the GRAS gene family and evidence for the involvement of PgGRAS48 in main root development in Panax ginseng', Frontiers in Plant Science, 16, pp. 1603268, http://dx.doi.org/10.3389/fpls.2025.1603268

Xu J; Huang X; Chen J; Shen Q; Hu R; Wang P; Yan Y; Di P, 2025, 'Establishment of hairy roots culture of Perilla frutescens L. and production of phenolic acids', MEDICINAL PLANT BIOLOGY, 4, http://dx.doi.org/10.48130/mpb-0025-0017

Liu P; Sun C; Zheng Y; Feng X; Qin C; Wang Y; Xu Z; Li Z; Di P; Jiang Y; Sun L, 2025, 'LLM-Powered Static Binary Taint Analysis', ACM Transactions on Software Engineering and Methodology, 34, http://dx.doi.org/10.1145/3711816

Wang Y; Wang P; Di P; Wang Y, 2025, 'Genome-wide analysis of LBD genes in the medicinal plant Panax ginseng reveals the roles and molecular mechanisms of PgLBD18 and PgLBD49 in regulating lateral root development', Industrial Crops and Products, 232, pp. 121232, http://dx.doi.org/10.1016/j.indcrop.2025.121232

Wang P; Wang Y; Lian J; Yan Y; Xing X; Zhang H; Piao X; Xu Y; Sui Y; Di P; Yang L; Wang Y, 2025, 'Transcription factors PgWRKY21 and PgWRKY101 regulate protopanaxatriol ginsenoside biosynthesis in Panax ginseng', Industrial Crops and Products, 236, pp. 121819, http://dx.doi.org/10.1016/j.indcrop.2025.121819

Yan Z; Zhang X; Di P, 2024, 'Scaling Abstraction Refinement for Program Analyses in Datalog using Graph Neural Networks', Proceedings of the ACM on Programming Languages, 8, http://dx.doi.org/10.1145/3689765

Liu J; Di P, 2024, 'New energy power system inertia weak position evaluation and frequency monitoring positioning', Frontiers in Energy Research, 12, pp. 1418302, http://dx.doi.org/10.3389/fenrg.2024.1418302

He W; Di P; Ming M; Zhang C; Su T; Li S; Sui Y, 2024, 'Finding and Understanding Defects in Static Analyzers by Constructing Automated Oracles', Proceedings of the ACM on Software Engineering, 1, pp. 1656 - 1678, http://dx.doi.org/10.1145/3660781

Li H; Tan T; Li Y; Lu J; Meng H; Cao L; Huang Y; Li L; Gao L; Di P; Lin L; Cui CX, 2024, 'Generic Sensitivity: Generics-Guided Context Sensitivity for Pointer Analysis', IEEE Transactions on Software Engineering, 50, pp. 1144 - 1162, http://dx.doi.org/10.1109/TSE.2024.3377645

Zhao J; Xu J; Di P; Nie W; Hu J; Yi Y; Yang S; Geng Z; Zhang R; Li B; Gan Z; Jin X, 2024, 'Modeling the Interplay between Loop Tiling and Fusion in Optimizing Compilers Using Affine Relations', ACM Transactions on Computer Systems, 41, http://dx.doi.org/10.1145/3635305

Wen H; Shi Y; Wang S; Chen T; Di P; Yang L, 2024, 'Route planning for UAVs maritime search and rescue considering the targets moving situation', Ocean Engineering, 310, pp. 118623, http://dx.doi.org/10.1016/j.oceaneng.2024.118623

Wen H; Di P; Chen T, 2023, 'Warship Mission Reliability Modeling and Simulation from the Perspective of Equipment Support Resource', Journal of Marine Science and Engineering, 11, pp. 504, http://dx.doi.org/10.3390/jmse11030504

Li L; Xie H; Li X; Zhang T; Pan D; Huo M; Chen F; Liu T; Shi K; Jiang Z, 2022, 'Numerical Analysis of the Effect of Work Roll Bending on Strip Crown During Tandem Hot Rolling', International Journal of Applied Mechanics, 14, pp. 2250052, http://dx.doi.org/10.1142/s1758825122500521

Ye L; Di P, 2021, 'OPTIMIZING THE REGULATION AND CONTROL OF SPORTS INJURY AND FATIGUE OF WINTER OLYMPIC ICE AND SNOW ATHLETES BASED ON INJURY PREVENTION', Revista Brasileira de Medicina do Esporte, 27, pp. 79 - 82, http://dx.doi.org/10.1590/1517-8692202127022021_0026

Zhang Q; Di P; Farnoosh A, 2021, 'Study on the impacts of Shanghai crude oil futures on global oil market and oil industry based on VECM and DAG models', Energy, 223, pp. 120050, http://dx.doi.org/10.1016/j.energy.2021.120050

Di P; Wang X; Chen T; Hu B, 2020, 'Multisensor Data Fusion in Testability Evaluation of Equipment', Mathematical Problems in Engineering, 2020, pp. 1 - 16, http://dx.doi.org/10.1155/2020/7821070

Li Y; Sun G; Di P, 2020, 'Evaluation of Government Performance in Haze Pollution Control and the Optimization Path in Beijing', CHINESE JOURNAL OF URBAN AND ENVIRONMENTAL STUDIES, 8, http://dx.doi.org/10.1142/S2345748120500141

Zhang JL; Yuan JF; Wan J; Mao J; Zhu LT; Zhou L; Jiang CF; Di P; Wang J, 2016, 'Efficient parallel implementation of incompressible pipe flow algorithm based on SIMPLE', Concurrency and Computation Practice and Experience, 28, pp. 1751 - 1766, http://dx.doi.org/10.1002/cpe.3000

Peng Di, , 2012, 'Characterization and the expression profile of 4-coumarate: CoA ligase (Ii4CL) from hairy roots of Isatis indigotica', African Journal of Pharmacy and Pharmacology, 6, http://dx.doi.org/10.5897/ajpp12.852

Di P; Wu H; Xue J; Wang F; Yang C, 2012, 'Parallelizing SOR for GPGPUs using alternate loop tiling', Parallel Computing, 38, pp. 310 - 328, http://dx.doi.org/10.1016/j.parco.2012.03.004

Zhang JL; Di P; Jiang CF; Zhang W; Xu XH; Wan J; Ren YJ, 2010, 'A parallel finite difference stencil algorithm based on iterative space alternate tiling', Ruan Jian Xue Bao Journal of Software, 21, pp. 270 - 283

Harper R; Xu CH; Di P; Chen Y; Privalsky M; Wu RE, 2004, 'Identification of a novel MAGE D2 antisense RNA transcript in human tissues', BIOCHEMICAL AND BIOPHYSICAL RESEARCH COMMUNICATIONS, 324, pp. 199 - 204, http://dx.doi.org/10.1016/j.bbrc.2004.09.037

Conference Papers

Ye T; Yu H; Ma T; Zhang X; Li J; Di P; Liu P; Yin J; Wang W, 2026, 'Domain-Specific Data Synthesis for LLMs through Minimal Sufficient Representation Learning', Association for Computing Machinery (ACM), pp. 6176 - 6187, presented at Proceedings of the 32nd ACM SIGKDD Conference on Knowledge Discovery and Data Mining V.2, http://dx.doi.org/10.1145/3770855.3817916

Chen X; Xiao S; Zhu X; Xie J; Liang M; Chen D; Jiang W; Li Y; Di P, 2026, 'NES: An Instruction-Free, Low-Latency Next Edit Suggestion Framework Powered by Learned Historical Editing Trajectories', in Fse Companion 2026 Proceedings of the 34th ACM International Conference on the Foundations of Software Engineering, pp. 719 - 730, http://dx.doi.org/10.1145/3803437.3805244

Liang M; Xie X; Zhang G; Zheng X; Jiang W; Wang C; Fan G; Di P, 2026, 'RepoFuse: A Dual-Context Approach to Repository-Level Code Completion at Industrial Scale', in Fse Companion 2026 Proceedings of the 34th ACM International Conference on the Foundations of Software Engineering, pp. 568 - 579, http://dx.doi.org/10.1145/3803437.3805230

Di P; Chen F; Bai X; Yang H; Li Q; Wei G; Mou J; Shi F; Chen K; Tang P; Shen Z; Li Z; Shi W; Guo J; Yu H, 2026, 'OpenDerisk: An Industrial Framework for AI-Driven SRE, with Design, Implementation, and Case Studies', in Proceedings 2026 IEEE ACM 48th International Conference on Software Engineering Software Engineering in Practice ICSE Seip 2026, pp. 186 - 199, http://dx.doi.org/10.1145/3786583.3786864

Xie X; Fan G; Lin X; Zhou A; Li S; Zheng X; Liang Y; Zhang Y; Yu N; Li H; Chen X; Chen Y; Zhen Y; Dong D; Fu X; Su J; Pan F; Luo P; Feng Y; Hu R; Guo H; Fan J; Xiao X; Di P, 2026, 'Principles and Practices of Large-Scale Code Analysis at Ant Group: A Data-And Logic-Oriented Approach', in Proceedings 2026 IEEE ACM 48th International Conference on Software Engineering Software Engineering in Practice ICSE Seip 2026, pp. 681 - 692, http://dx.doi.org/10.1145/3786583.3786907

Tao Y; Zeng X; Ding Q; Dong Y; Peng D; Di P; Liu P; Ke W, 2026, 'TimeDiff: Leveraging Differential Domain Representations for Long Time Series Forecasting', in ICASSP 2026 - 2026 IEEE International Conference on Acoustics, Speech and Signal Processing (ICASSP), IEEE, pp. 5131 - 5135, presented at ICASSP 2026 - 2026 IEEE International Conference on Acoustics, Speech and Signal Processing (ICASSP), 03 May 2026 - 08 May 2026, http://dx.doi.org/10.1109/icassp55912.2026.11462664

Liang ZQ; Gao H; Wang J; Liu F; Shi X; Gu J; Di P; Li S; Tang L; Zhou C; Zhao L; Wang Y; Chi X, 2026, 'TAC: Cache-Based System for Accelerating Billion-Scale GNN Training on Multi-GPU Platform', in Proceedings of the 31st ACM SIGPLAN Annual Symposium on Principles and Practice of Parallel Programming Ppopp 2026, pp. 577 - 590, http://dx.doi.org/10.1145/3774934.3786460


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