Select Publications

Journal articles

King JD; Berry S; Clarke BR; Morris RJ; Whitfield C, 2014, 'Lipopolysaccharide O antigen size distribution is determined by a chain extension complex of variable stoichiometry in Escherichia coli O9a', Proceedings of the National Academy of Sciences of the United States of America, 111, pp. 6407 - 6412, http://dx.doi.org/10.1073/pnas.1400814111

Berry SM; Chin EN; Jackson SS; Strotman LN; Goel M; Thompson NE; Alexander CM; Miyamoto S; Burgess RR; Beebe DJ, 2014, 'Weak protein-protein interactions revealed by immiscible filtration assisted by surface tension', ANALYTICAL BIOCHEMISTRY, 447, pp. 133 - 140, http://dx.doi.org/10.1016/j.ab.2013.10.038

Guckenberger DJ; Thomas PC; Rothbauer J; LaVanway AJ; Anderson M; Gilson D; Fawcett K; Berto T; Barrett K; Beebe DJ; Berry SM, 2014, 'A Combined Fabrication and Instrumentation Platform for Sample Preparation', JALA, 19, pp. 267 - 274, http://dx.doi.org/10.1177/2211068213518312

Howard AL; Pezzi HM; Beebe DJ; Berry SM, 2014, 'Exclusion-Based Capture and Enumeration of CD4+ T Cells from Whole Blood for Low-Resource Settings', SLAS TECHNOLOGY, 19, pp. 313 - 321, http://dx.doi.org/10.1177/2211068213509248

Berry SM; LaVanway AJ; Pezzi HM; Guckenberger DJ; Anderson MA; Loeb JM; Beebe DJ, 2014, 'HIV Viral RNA Extraction in Wax Immiscible Filtration Assisted by Surface Tension (IFAST) Devices', Journal of Molecular Diagnostics, 16, pp. 297 - 304, http://dx.doi.org/10.1016/j.jmoldx.2014.01.004

Berry SM; Singh C; Lang JD; Strotman LN; Alarid ET; Beebe DJ, 2014, 'Streamlining gene expression analysis: integration of co-culture and mRNA purification', INTEGRATIVE BIOLOGY, 6, pp. 224 - 231, http://dx.doi.org/10.1039/c3ib40136g

Berry SA; Rhode MN; Edquist KT, 2014, 'Supersonic Retropropulsion Experimental Results from NASA Ames 9×7 Foot Supersonic Wind Tunnel', Journal of Spacecraft and Rockets, 51, pp. 724 - 734, http://dx.doi.org/10.2514/1.a32650

Berry SA; Rhode MN; Edquist K, 2014, 'Supersonic Retropropulsion Validation Experiment in the NASA Langley Unitary Plan Wind Tunnel', Journal of Spacecraft and Rockets, 51, pp. 664 - 679, http://dx.doi.org/10.2514/1.a32649

Strotman L; O’Connell R; Casavant BP; Berry SM; Sperger JM; Lang JM; Beebe DJ, 2013, 'Selective Nucleic Acid Removal via Exclusion (SNARE): Capturing mRNA and DNA from a Single Sample', Analytical Chemistry, 85, pp. 9764 - 9770, http://dx.doi.org/10.1021/ac402162r

Thomas PC; Strotman LN; Theberge AB; Berthier E; O’Connell R; Loeb JM; Berry SM; Beebe DJ, 2013, 'Nucleic Acid Sample Preparation Using Spontaneous Biphasic Plug Flow', Analytical Chemistry, 85, pp. 8641 - 8646, http://dx.doi.org/10.1021/ac4012914

Casavant BP; Guckenberger DJ; Berry SM; Tokar JT; Lang JM; Beebe DJ, 2013, 'The VerIFAST: an integrated method for cell isolation and extracellular/intracellular staining', Lab on a Chip, 13, pp. 391 - 396, http://dx.doi.org/10.1039/c2lc41136a

Casavant BP; Mosher R; Warrick JW; Maccoux LJ; Berry SMF; Becker JT; Chen V; Lang JM; McNeel DG; Beebe DJ, 2013, 'A negative selection methodology using a microfluidic platform for the isolation and enumeration of circulating tumor cells', Methods, 64, pp. 137 - 143, http://dx.doi.org/10.1016/j.ymeth.2013.05.027

Berry SM; Regehr KJ; Casavant BP; Beebe DJ, 2013, 'Automated Operation of Immiscible Filtration Assisted by Surface Tension (IFAST) Arrays for Streamlined Analyte Isolation', SLAS TECHNOLOGY, 18, pp. 206 - 211, http://dx.doi.org/10.1177/2211068212462023

Moussavi-Harami SF; Annis DS; Ma W; Berry SM; Coughlin EE; Strotman LN; Maurer LM; Westphall MS; Coon JJ; Mosher DF; Beebe DJ, 2013, 'Characterization of Molecules Binding to the 70K N-Terminal Region of Fibronectin by IFAST Purification Coupled with Mass Spectrometry', JOURNAL OF PROTEOME RESEARCH, 12, pp. 3393 - 3404, http://dx.doi.org/10.1021/pr400225p

Lang JD; Berry SM; Powers GL; Beebe DJ; Alarid ET, 2013, 'Hormonally responsive breast cancer cells in a microfluidic co-culture model as a sensor of microenvironmental activity', Integrative Biology, 5, pp. 807 - 816, http://dx.doi.org/10.1039/c3ib20265h

Berry SM; Barish CF; Bhandari R; Clark G; Collins GV; Howell J; Pappas JE; Riff DS; Safdi M; Yellowlees A, 2013, 'Nitroglycerin 0.4% ointment vs placebo in the treatment of pain resulting from chronic anal fissure: a randomized, double-blind, placebo-controlled study', BMC Gastroenterology, 13, pp. 106, http://dx.doi.org/10.1186/1471-230x-13-106

Gnoffo PA; Berry SA; Van Norman JW, 2013, 'Uncertainty Assessments of Hypersonic Shock Wave-Turbulent Boundary-Layer Interactions at Compression Corners', Journal of Spacecraft and Rockets, 50, pp. 69 - 95, http://dx.doi.org/10.2514/1.a32250

Richards D; Berry S; HOward M, 2012, 'Illustrations of mathematical modeling in biology: Epigenetics, meiosis, and an outlook', Cold Spring Harbor Symposia on Quantitative Biology, 77, pp. 175 - 181, http://dx.doi.org/10.1101/sqb.2013.77.015941

Berry SM; Maccoux LJ; Beebe DJ, 2012, 'Streamlining Immunoassays with Immiscible Filtrations Assisted by Surface Tension', Analytical Chemistry, 84, pp. 5518 - 5523, http://dx.doi.org/10.1021/ac300085m

Goel S; Chin EN; Fakhraldeen SA; Berry SM; Beebe DJ; Alexander CM, 2012, 'Both LRP5 and LRP6 Receptors Are Required to Respond to Physiological Wnt Ligands in Mammary Epithelial Cells and Fibroblasts*', Journal of Biological Chemistry, 287, pp. 16454 - 16466, http://dx.doi.org/10.1074/jbc.m112.362137

Berry SM; Pabba S; Cohn RW; Keynton RS, 2012, 'Direct‐Write Drawing of Carbon Nanotube/Polymer Composite Microfibers', Journal of Nanomaterials, 2012, http://dx.doi.org/10.1155/2012/690301

Berry SM; Roussel TJ; Cambron SD; Cohn RW; Keynton RS, 2012, 'Fabrication of suspended electrokinetic microchannels from directly written sacrificial polymer fibers', Microfluidics and Nanofluidics, 13, pp. 451 - 459, http://dx.doi.org/10.1007/s10404-012-0973-z

Strotman LN; Lin G; Berry SM; Johnson EA; Beebe DJ, 2012, 'Facile and rapid DNA extraction and purification from food matrices using IFAST (immiscible filtration assisted by surface tension)', Analyst, 137, pp. 4023 - 4028, http://dx.doi.org/10.1039/c2an35506j

Berry SD; Bourke P; Wang JB, 2011, 'QwViz: Visualisation of quantum walks on graphs', Computer Physics Communications, 182, pp. 2295 - 2302, http://dx.doi.org/10.1016/j.cpc.2011.06.002

Berry SD; Wang JB, 2011, 'Two-particle quantum walks: Entanglement and graph isomorphism testing', Physical Review A Atomic Molecular and Optical Physics, 83, http://dx.doi.org/10.1103/PhysRevA.83.042317

Berry SM; Pabba S; Crest J; Cambron SD; McKinley GH; Cohn RW; Keynton RS, 2011, 'Characterization and modeling of direct-write fabrication of microscale polymer fibers', Polymer, 52, pp. 1654 - 1661, http://dx.doi.org/10.1016/j.polymer.2011.01.059

Berry SM; Warren SP; Hilgart DA; Schworer AT; Pabba S; Gobin AS; Cohn RW; Keynton RS, 2011, 'Endothelial cell scaffolds generated by 3D direct writing of biodegradable polymer microfibers', Biomaterials, 32, pp. 1872 - 1879, http://dx.doi.org/10.1016/j.biomaterials.2010.11.023

Berry SM; Alarid ET; Beebe DJ, 2011, 'One-step purification of nucleic acid for gene expression analysis via Immiscible Filtration Assisted by Surface Tension (IFAST)', Lab on a Chip, 11, pp. 1747 - 1753, http://dx.doi.org/10.1039/c1lc00004g

Katlic MR; Facktor MA; Berry SA; McKinley KE; Bothe A; Steele GD, 2011, 'ProvenCare lung cancer: A multi‐institutional improvement collaborative', CA A Cancer Journal for Clinicians, 61, pp. 382 - 396, http://dx.doi.org/10.3322/caac.20119

Berry SA; Laam LA; Wary AA; Mateer HO; Cassagnol HP; McKinley KE; Nolan RA, 2011, 'ProvenCare Perinatal: A Model for Delivering Evidence/Guideline-Based Care for Perinatal Populations', The Joint Commission Journal on Quality and Patient Safety, 37, pp. 229 - ap3, http://dx.doi.org/10.1016/s1553-7250(11)37030-4

Berry SM; Strotman LN; Kueck JD; Alarid ET; Beebe DJ, 2011, 'Purification of cell subpopulations via immiscible filtration assisted by surface tension (IFAST)', Biomedical Microdevices, 13, pp. 1033 - 1042, http://dx.doi.org/10.1007/s10544-011-9573-z

Berry SD; Wang JB, 2010, 'Quantum-walk-based search and centrality', Physical Review A Atomic Molecular and Optical Physics, 82, http://dx.doi.org/10.1103/PhysRevA.82.042333

Zelaya-Molina LX; Ellis ML; Berry SA; Dorrance AE, 2010, 'First Report of Phytophthora sansomeana Causing Wilting and Stunting on Corn in Ohio.', Plant Disease, 94, pp. 125, http://dx.doi.org/10.1094/pdis-94-1-0125c

Berry SA; Doll MC; McKinley KE; Casale AS; Bothe A, 2009, 'ProvenCare: quality improvement model for designing highly reliable care in cardiac surgery', BMJ Quality & Safety, 18, pp. 360, http://dx.doi.org/10.1136/qshc.2007.025056

Rathfon JM; AL‐Badri ZM; Shunmugam R; Berry SM; Pabba S; Keynton RS; Cohn RW; Tew GN, 2009, 'Fluorimetric Nerve Gas Sensing Based on Pyrene Imines Incorporated into Films and Sub‐Micrometer Fibers', Advanced Functional Materials, 19, pp. 689 - 695, http://dx.doi.org/10.1002/adfm.200800947

Yazdanpanah MM; Hosseini M; Pabba S; Berry SM; Dobrokhotov VV; Safir A; Keynton RS; Cohn RW, 2008, 'Micro-Wilhelmy and Related Liquid Property Measurements Using Constant-Diameter Nanoneedle-Tipped Atomic Force Microscope Probes', Langmuir, 24, pp. 13753 - 13764, http://dx.doi.org/10.1021/la802820u

Nelson EC; Godfrey MM; Batalden PB; Berry SA; Bothe AE; McKinley KE; Melin CN; Muething SE; Moore LG; Nolan TW; Wasson JH, 2008, 'Clinical Microsystems, Part 1. The Building Blocks of Health Systems', The Joint Commission Journal on Quality and Patient Safety, 34, pp. 367 - 378, http://dx.doi.org/10.1016/s1553-7250(08)34047-1

McKinley KE; Berry SA; Laam LA; Doll MC; Brin KP; Bothe A; Godfrey MM; Nelson EC; Batalden PB, 2008, 'Clinical Microsystems, Part 4. Building Innovative Population-Specific Mesosystems', The Joint Commission Journal on Quality and Patient Safety, 34, pp. 655 - 663, http://dx.doi.org/10.1016/s1553-7250(08)34083-5

St Martin SK; Feller MK; McIntyre SA; Fioritto RJ; Dorrance AE; Berry SA; Sneller CH, 2008, 'Registration of 'Dennison' Soybean', JOURNAL OF PLANT REGISTRATIONS, 2, pp. 21 - 21, http://dx.doi.org/10.3198/jpr2007.02.0118crc

Pabba S; Sidorov AN; Berry SM; Yazdanpanah MM; Keynton RS; Sumanasekera GU; Cohn RW, 2007, 'Oriented Nanomaterial Air Bridges Formed from Suspended Polymer-Composite Nanofibers', ACS Nano, 1, pp. 57 - 62, http://dx.doi.org/10.1021/nn700047n

Gordon SG; Berry SA; St Martin SK; Dorrance AE, 2007, 'Genetic Analysis of Soybean Plant Introductions with Resistance to Phytophthora sojae.', Phytopathology, 97, pp. 106 - 112, http://dx.doi.org/10.1094/phyto-97-0106

Berry SM; Harfenist SA; Cohn RW; Keynton RS, 2006, 'Characterization of micromanipulator-controlled dry spinning of micro- and sub-microscale polymer fibers', Journal of Micromechanics and Microengineering, 16, pp. 1825, http://dx.doi.org/10.1088/0960-1317/16/9/010

Harfenist SA; Cambron SD; Nelson EW; Berry SM; Isham AW; Crain MM; Walsh KM; Keynton RS; Cohn RW, 2004, 'Direct Drawing of Suspended Filamentary Micro- and Nanostructures from Liquid Polymers', Nano Letters, 4, pp. 1931 - 1937, http://dx.doi.org/10.1021/nl048919u

Horvath TJ; Berry SA; Merski NR; Fitzgerald SM, 2004, 'X-38 Experimental Aerothermodynamics', Journal of Spacecraft and Rockets, 41, pp. 272 - 292, http://dx.doi.org/10.2514/1.9198

Blanchard RC; Wilmoth RG; Glass CE; Merski NR; Berry SA; Bozung TJ; Tietjen A; Wendt J; Dawson D, 2001, 'Infrared Sensing Aeroheating Flight Experiment: STS-96 Flight Results', Journal of Spacecraft and Rockets, 38, pp. 465 - 472, http://dx.doi.org/10.2514/2.3713

Hollis BR; Horvath TJ; Berry SA; Hamilton HH; Thompson RA; Alter SJ, 2001, 'X-33 Computational Aeroheating Predictions and Comparisons with Experimental Data', Journal of Spacecraft and Rockets, 38, pp. 658 - 669, http://dx.doi.org/10.2514/2.3751

Horvath TJ; Berry SA; Hollis BR; Liechty DS; Hamilton HH; Merski NR, 2001, 'X-33 Experimental Aeroheating at Mach 6 Using Phosphor Thermography', Journal of Spacecraft and Rockets, 38, pp. 634 - 645, http://dx.doi.org/10.2514/2.3748

Berry SA; Horvath TJ; Hollis BR; Thompson RA; Hamilton HH, 2001, 'X-33 Hypersonic Boundary-Layer Transition', Journal of Spacecraft and Rockets, 38, pp. 646 - 657, http://dx.doi.org/10.2514/2.3750

Berry SA; Horvath TJ; Difulvio M; Glass C; Merski NR, 1999, 'X-34 Experimental Aeroheating at Mach 6 and 10', Journal of Spacecraft and Rockets, 36, pp. 171 - 178, http://dx.doi.org/10.2514/2.3447

Berry SM; Fink AS, 1996, 'Insulin inhibits secretin-stimulated pancreatic bicarbonate output by a dose-dependent neurally mediated mechanism', American Journal of Physiology, 270, pp. g163 - g170, http://dx.doi.org/10.1152/ajpgi.1996.270.1.g163


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