By Associate Professor Jason Dowling

Conference Papers

Nicolson A; Dowling J; Koopman B, 2023, 'A Concise Model for Medical Image Captioning', in CEUR Workshop Proceedings, pp. 1611 - 1619

Nicolson A; Dowling J; Koopman B, 2023, 'e-Health CSIRO at RadSum23: Adapting a Chest X-Ray Report Generator to Multimodal Radiology Report Summarisation', in Proceedings of the Annual Meeting of the Association for Computational Linguistics, pp. 545 - 549

Liu S; Dowling JA; Engstrom C; Greer PB; Crozier S; Chandra SS, 2023, 'Manipulating Medical Image Translation with Manifold Disentanglement', in 2023 International Conference on Digital Image Computing: Techniques and Applications, DICTA 2023, pp. 332 - 339, http://dx.doi.org/10.1109/DICTA60407.2023.00053

Leung SN; Dowling JA; Fripp J; Shen KK; Chandra SS, 2023, 'Medical Shape Pattern Analysis with MeshCNN', in Proceedings - International Symposium on Biomedical Imaging, http://dx.doi.org/10.1109/ISBI53787.2023.10230427

Chourak H; Barateau A; Nunes J-C; Greer PB; Tahri S; Lafond C; de Crevoisier R; Dowling J; Acosta O, 2022, 'Local quality assessment of patient specific synthetic-CT via voxel-wise analysis', in 2022 International Conference on Digital Image Computing: Techniques and Applications (DICTA), IEEE, presented at 2022 International Conference on Digital Image Computing: Techniques and Applications (DICTA), 30 November 2022 - 02 December 2022, http://dx.doi.org/10.1109/dicta56598.2022.10034622

Lebrat L; Nicolson A; Santa Cruz R; Belous G; Koopman B; Dowling J, 2022, 'CSIRO at ImageCLEFmedical Caption 2022', in CEUR Workshop Proceedings, pp. 1455 - 1473

Xin B; Min H; Gillman AG; Koopman B; Dowling J; Nicolson A, 2022, 'CSIRO at the ImageCLEFmed 2022 Tuberculosis Caverns Detection Challenge: A 2D and 3D Deep Learning Detection Network Approach', in CEUR Workshop Proceedings, pp. 1626 - 1640

Finnegan R; Reynolds HM; Sun Y; Ebert MA; Holloway L; Sykes J; Dowling J; Haworth A, 2021, 'a probabilistic biological atlas for prostate cancer', in RADIOTHERAPY AND ONCOLOGY, ELSEVIER IRELAND LTD, pp. S417 - S418, https://www.webofscience.com/api/gateway?GWVersion=2&SrcApp=PARTNER_APP&SrcAuth=LinksAMR&KeyUT=WOS:000709667201103&DestLinkType=FullRecord&DestApp=ALL_WOS&UsrCustomerID=891bb5ab6ba270e68a29b250adbe88d1

Chourak H; Barateau A; Cadin C; Lafond C; Nunes J; De Crevoiser R; Dowling J; Greer P; Acosta O, 2021, 'Spatial Characterization of errors in pseudo-CT generation for MRI-only radiotherapy', in RADIOTHERAPY AND ONCOLOGY, ELSEVIER IRELAND LTD, pp. S1408 - S1410, https://www.webofscience.com/api/gateway?GWVersion=2&SrcApp=PARTNER_APP&SrcAuth=LinksAMR&KeyUT=WOS:000709667204179&DestLinkType=FullRecord&DestApp=ALL_WOS&UsrCustomerID=891bb5ab6ba270e68a29b250adbe88d1

Cruz RS; Lebrat L; Bourgeat P; Dore V; Dowling J; Fripp J; Fookes C; Salvado O, 2021, 'Going deeper with brain morphometry using neural networks', in Proceedings - International Symposium on Biomedical Imaging, pp. 711 - 715, http://dx.doi.org/10.1109/ISBI48211.2021.9434039

Chourak H; Barateau A; Mylona E; Cadin C; Lafond C; Greer P; Dowling J; Jean-Claude-Nunes ; Crevoisier RD; Acosta O, 2021, 'Voxel-wise analysis for spatial characterisation of pseudo-ct errors in MRI-only radiotherapy planning', in Proceedings - International Symposium on Biomedical Imaging, pp. 395 - 399, http://dx.doi.org/10.1109/ISBI48211.2021.9433800

Tonina T; Alshehhi H; Dowling J; Jamanca-Lino G; Kennedy E; Kucher Y; Rijin KV; Norber I, 2021, 'Advanced Propulsion as a Cornerstone for Space Exploration and Interstellar Living', in Proceedings of the International Astronautical Congress, IAC

Nicolson A; Dowling J; Koopman B, 2021, 'AEHRC CSIRO at ImageCLEFmed caption 2021', in CEUR Workshop Proceedings, pp. 1317 - 1328

Stephane K; Houssayni A; Cassard U; Barateau A; Duverge L; Largent A; Acosta O; Nunes J; Messai T; Simon A; Dowling J; Perichon N; De Crevoisier R, 2020, 'MRI only based planning to decrease toxicity in prostate cancer IMRT/IGRT: a dosimetric study', in RADIOTHERAPY AND ONCOLOGY, ELSEVIER IRELAND LTD, pp. S798 - S799, https://www.webofscience.com/api/gateway?GWVersion=2&SrcApp=PARTNER_APP&SrcAuth=LinksAMR&KeyUT=WOS:000648572703008&DestLinkType=FullRecord&DestApp=ALL_WOS&UsrCustomerID=891bb5ab6ba270e68a29b250adbe88d1

Finnegan R; Lorenzen E; Dowling J; Thwaites D; Jensen I; Berg M; Thomsen M; Offersen B; Brink C; Holloway L, 2020, 'Analysis of Cardiac Substructure Dosimetry in a Large, Multi-Centre Danish Breast Cancer Cohort: Trends and Predictive Modelling', in MEDICAL PHYSICS, WILEY, pp. E322 - E322, https://www.webofscience.com/api/gateway?GWVersion=2&SrcApp=PARTNER_APP&SrcAuth=LinksAMR&KeyUT=WOS:000699823200217&DestLinkType=FullRecord&DestApp=ALL_WOS&UsrCustomerID=891bb5ab6ba270e68a29b250adbe88d1

Cloak K; Jameson MG; Lee M; Chu J; Tan J; Tran P; Chlap P; Dowling J; Leong T; Holloway L, 2019, 'Avoiding garbage in: A consensus workshop for refining gastric cancer radiotherapy atlas data', in RADIOTHERAPY AND ONCOLOGY, ELSEVIER IRELAND LTD, SINGAPORE, Singapore, pp. S20 - S21, presented at ESTRO Meets Asia Conference, SINGAPORE, Singapore, 06 December 2019 - 08 December 2019, https://www.webofscience.com/api/gateway?GWVersion=2&SrcApp=PARTNER_APP&SrcAuth=LinksAMR&KeyUT=WOS:000558740600045&DestLinkType=FullRecord&DestApp=ALL_WOS&UsrCustomerID=891bb5ab6ba270e68a29b250adbe88d1

Largent A; Nunes JC; Saint-Jalmes H; Baxter J; Greer P; Dowling J; Crevoisier RD; Acosta O, 2019, 'Pseudo-CT generation for mri-only radiotherapy: Comparative study between a generative adversarial network, a u-net network, a patch-based, and an atlas based methods', in Proceedings - International Symposium on Biomedical Imaging, pp. 1109 - 1113, http://dx.doi.org/10.1109/ISBI.2019.8759278

Arabi H; Dowling JA; Burgos N; Han X; Greer PB; Koutsouvelis N; Zaidi H, 2018, 'Comparison of synthetic CT generation algorithms for MRI-only radiation planning in the pelvic region', in 2018 IEEE Nuclear Science Symposium and Medical Imaging Conference, NSS/MIC 2018 - Proceedings, http://dx.doi.org/10.1109/NSSMIC.2018.8824321

Marcello M; Kennedy A; Dowling J; Haworth A; Holloway L; Gulliford S; Dearnaley D; Denham J; Ebert M, 2018, 'Spatial, Anatomically-Localized Mapping of Dose-Toxicity Associations Following Prostate Radiotherapy', in MEDICAL PHYSICS, WILEY, TN, Nashville, pp. E446 - E446, presented at 60th Annual Meeting of the American-Association-of-Physicists-in-Medicine, TN, Nashville, 29 July 2018 - 02 August 2018, https://www.webofscience.com/api/gateway?GWVersion=2&SrcApp=PARTNER_APP&SrcAuth=LinksAMR&KeyUT=WOS:000434978003119&DestLinkType=FullRecord&DestApp=ALL_WOS&UsrCustomerID=891bb5ab6ba270e68a29b250adbe88d1

PGreer ; Fuangrod T; Simpson J; Pichler P; McNeilly A; McCurdy B; Dowling J, 2018, 'Verification of Synthetic CT Scans for MRI-Only Prostate Treatment with EPID Transit Image Prediction', in MEDICAL PHYSICS, WILEY, TN, Nashville, pp. E655 - E655, presented at 60th Annual Meeting of the American-Association-of-Physicists-in-Medicine, TN, Nashville, 29 July 2018 - 02 August 2018, https://www.webofscience.com/api/gateway?GWVersion=2&SrcApp=PARTNER_APP&SrcAuth=LinksAMR&KeyUT=WOS:000434978005105&DestLinkType=FullRecord&DestApp=ALL_WOS&UsrCustomerID=891bb5ab6ba270e68a29b250adbe88d1

Roach D; Dowling JA; Kennedy A; Jameson M; Greer P; Ebert M; Holloway L, 2018, 'Can contouring probability maps be a predictor for prostate cancer treatment outcome and toxicity?', in RADIOTHERAPY AND ONCOLOGY, ELSEVIER IRELAND LTD, SPAIN, Barcelona, pp. S1186 - S1187, presented at 37th Meeting of the European-Society-for-Radiotherapy-and-Oncology (ESTRO), SPAIN, Barcelona, 20 April 2018 - 24 April 2018, http://dx.doi.org/10.1016/S0167-8140(18)32459-9

Roach D; Ebert MA; Jameson M; Dowling JA; Kennedy A; Greer P; Holloway L, 2018, 'Inter-observer contouring variation of multiple pelvic structures on CT and MR for prostate cancer', in RADIOTHERAPY AND ONCOLOGY, ELSEVIER IRELAND LTD, SPAIN, Barcelona, pp. S869 - S870, presented at 37th Meeting of the European-Society-for-Radiotherapy-and-Oncology (ESTRO), SPAIN, Barcelona, 20 April 2018 - 24 April 2018, http://dx.doi.org/10.1016/S0167-8140(18)31923-6

Jameson M; Dowling J; Faustino J; Cloak K; Sidhom M; Martin J; De Leon J; Berry M; Pryor D; Holloway L, 2018, 'TRAC: Automated atlas based machine learning QA of contouring accuracy for the PROMETHEUS trial', in RADIOTHERAPY AND ONCOLOGY, ELSEVIER IRELAND LTD, SPAIN, Barcelona, pp. S429 - S430, presented at 37th Meeting of the European-Society-for-Radiotherapy-and-Oncology (ESTRO), SPAIN, Barcelona, 20 April 2018 - 24 April 2018, http://dx.doi.org/10.1016/S0167-8140(18)31133-2

O'Connor L; Greer P; Dowling J; Martin J; Warren-Forward H; Richardson H; Best L, 2017, 'MRI Only Anal Canal, Rectum, Cervix and Endometrium Radiation Therapy Planning (MARVEL)', in ASIA-PACIFIC JOURNAL OF CLINICAL ONCOLOGY, WILEY, pp. 24 - 24, https://www.webofscience.com/api/gateway?GWVersion=2&SrcApp=PARTNER_APP&SrcAuth=LinksAMR&KeyUT=WOS:000413952600037&DestLinkType=FullRecord&DestApp=ALL_WOS&UsrCustomerID=891bb5ab6ba270e68a29b250adbe88d1

Largent A; Nunes JC; Saint-Jalmes H; Simon A; Perichon N; Barateau A; Hervé C; Lafond C; Greer PB; Dowling JA; De Crevoisier R; Acosta O, 2017, 'Pseudo-CT generation by conditional inference random forest for MRI-based radiotherapy treatment planning', in 25th European Signal Processing Conference, EUSIPCO 2017, Kos, Greece, pp. 46 - 50, presented at 2017 25th European Signal Processing Conference (EUSIPCO), Kos, Greece, 28 August 2017 - 02 September 2017, http://dx.doi.org/10.23919/EUSIPCO.2017.8081166

Roach D; Jameson M; Dowling J; Ebert M; Greer P; Watt S; Holloway L, 2017, 'Inter-observer contouring similarity metrics, correlation with treatment outcome for prostate cancer', in RADIOTHERAPY AND ONCOLOGY, ELSEVIER IRELAND LTD, pp. S949 - S949, http://dx.doi.org/10.1016/S0167-8140(17)32260-0

Bell L; Dowling J; Pogson EM; Metcalfe P; Holloway L, 2016, 'An atlas based auto-contouring technique incorporating interobserver variation', in RADIOTHERAPY AND ONCOLOGY, ELSEVIER IRELAND LTD, pp. S897 - S897, http://dx.doi.org/10.1016/S0167-8140(16)33147-4

Bell LR; Dowling JA; Pogson EM; Metcalfe P; Holloway L, 2016, 'Atlas-based segmentation technique incorporating inter-observer delineation uncertainty for whole breast', in Baldock C; Rozenfeld A; Metcalfe P (eds.), Journal of Physics: Conference Series, IOP Publishing, AUSTRALIA, Tasmania, pp. 012002, presented at Conference on Micro-Mini and Nano-Dosimetry and Innovative Technologies in Radiation Therapy (MMND and ITRO), AUSTRALIA, Tasmania, 26 January 2016 - 28 January 2016, http://dx.doi.org/10.1088/1742-6596/777/1/012002

2016, 'EPSM 2016, Engineering and Physical Sciences in Medicine : 6-10 November 2016, Sydney, Australia.', in Australas Phys Eng Sci Med, Netherlands, pp. 1045 - 1190, Netherlands, http://dx.doi.org/10.1007/s13246-016-0494-2

Greer PB; Dowling J; Rivest-Henault D; Ghose S; Pichler P; Sun J; Richardson H; Menk F; Martin J; Wratten C, 2015, 'Generation of density maps for dose calculations from MRI using atlas methods', in RADIOTHERAPY AND ONCOLOGY, ELSEVIER IRELAND LTD, pp. S11 - S12, https://www.webofscience.com/api/gateway?GWVersion=2&SrcApp=PARTNER_APP&SrcAuth=LinksAMR&KeyUT=WOS:000688178300042&DestLinkType=FullRecord&DestApp=ALL_WOS&UsrCustomerID=891bb5ab6ba270e68a29b250adbe88d1

Ghose S; Mitra J; Khanna S; Dowling J, 2015, 'An Improved Patient-Specific Mortality Risk Prediction in ICU in a Random Forest Classification Framework', in Studies in Health Technology and Informatics, pp. 56 - 61, http://dx.doi.org/10.3233/978-1-61499-558-6-56

Ghose S; Mitra J; Karunanithi M; Dowling J, 2015, 'Human Activity Recognition from Smart-Phone Sensor Data using a Multi-Class Ensemble Learning in Home Monitoring', in Studies in Health Technology and Informatics, pp. 62 - 67, http://dx.doi.org/10.3233/978-1-61499-558-6-62

Dowling JA; Burdett N; Greer PB; Sun J; Parker J; Pichler P; Stanwell P; Chandra S; Rivest-Hénault D; Ghose S; Salvado O; Fripp J, 2014, 'Automatic Atlas Based Electron Density and Structure Contouring for MRI-based Prostate Radiation Therapy on the Cloud', in Journal of Physics: Conference Series, http://dx.doi.org/10.1088/1742-6596/489/1/012048

Dowling J; Pichler P; Sun J; Rivest-Henault D; Ghose S; Martin J; Wratten C; Stanwell P; Fripp J; Greer P, 2014, 'CT substitute derived from MRI for external beam prostate radiotherapy', in RADIOTHERAPY AND ONCOLOGY, ELSEVIER IRELAND LTD, pp. S135 - S135, https://www.webofscience.com/api/gateway?GWVersion=2&SrcApp=PARTNER_APP&SrcAuth=LinksAMR&KeyUT=WOS:000688272900341&DestLinkType=FullRecord&DestApp=ALL_WOS&UsrCustomerID=891bb5ab6ba270e68a29b250adbe88d1

Dowling J; Dang K; Fox CD; Chandra S; Gill S; Kron T; Pham D; Foroudi F, 2014, 'Fast cine-magnetic resonance imaging point tracking for prostate cancer radiation therapy planning', in Journal of Physics: Conference Series, http://dx.doi.org/10.1088/1742-6596/489/1/012027

Rivest-Hénault D; Ghose S; Pluim JPW; Greer PB; Fripp J; Dowling JA, 2014, 'Fast multiatlas selection using composition of transformations for radiation therapy planning', in Lecture Notes in Computer Science (including subseries Lecture Notes in Artificial Intelligence and Lecture Notes in Bioinformatics), pp. 105 - 115, http://dx.doi.org/10.1007/978-3-319-13972-2_10

Rivest-Hénault D; Dowson N; Greer P; Dowling J, 2014, 'Inverse-consistent rigid registration of CT and MR for MR-based planning and adaptive prostate radiation therapy', in Journal of Physics: Conference Series, http://dx.doi.org/10.1088/1742-6596/489/1/012039

Rivest-Hénault D; Greer P; Fripp J; Dowling J, 2014, 'Structure-guided nonrigid registration of CT-MR pelvis scans with large deformations in MR-based image guided radiation therapy', in Lecture Notes in Computer Science (including subseries Lecture Notes in Artificial Intelligence and Lecture Notes in Bioinformatics), pp. 65 - 73, http://dx.doi.org/10.1007/978-3-319-05666-1_9

Ghose S; Denham J; Ebert M; Kennedy A; Mitra J; Rose S; Dowling J, 2013, 'Multi-atlas and Gaussian mixture modeling based perirectal fat segmentation from CT images', in Lecture Notes in Computer Science (including subseries Lecture Notes in Artificial Intelligence and Lecture Notes in Bioinformatics), pp. 194 - 202, http://dx.doi.org/10.1007/978-3-642-41083-3_22

Dimigen M; Vinod S; Borok N; Holloway L; Dowling J; Lim K, 2012, 'The Use of Cervical Cancer MRI Contouring Guidelines in Clinical Practice', in INTERNATIONAL JOURNAL OF RADIATION ONCOLOGY BIOLOGY PHYSICS, ELSEVIER SCIENCE INC, MA, Boston, pp. S433 - S433, presented at 54th Annual Meeting of the American-Society-for-Radiation-Oncology (ASTRO), MA, Boston, 28 October 2012 - 31 October 2012, http://dx.doi.org/10.1016/j.ijrobp.2012.07.1147

Whelan B; Kumar S; Dowling J; Lambert J; Lim K; Salvado O; Begg J; Greer P; Vinod S; Holloway L, 2012, 'Requirements for the Accuracy of Electron Density Data Planning for MRI Based Cervix Cancer Treatment Planning', in MEDICAL PHYSICS, AMER ASSOC PHYSICISTS MEDICINE AMER INST PHYSICS, NC, Charlotte, pp. 3694 - 3694, presented at 54th Annual Meeting and Exhibition of the American-Association-of-Physicists-in-Medicine (AAPM), NC, Charlotte, 29 July 2012 - 02 August 2012, http://dx.doi.org/10.1118/1.4735020

Whelan B; Pant N; Dowling J; Lambert J; Lim K; Salvado O; Begg J; Greer P; Vinod SK; Holloway L, 2012, 'Requirements for the accuracy of electron density data planning for MRI based cervix cancer treatment planning', in Medical Physics, American Association Physicists Medicine American Inst P, Melville, NY, USA, pp. 39 (6):3694-3694; JUN 2012, presented at 55th Annual Meeting of the American Association of Physicists in Medicine, http://dx.doi.org/10.1118/1.4735020

Chandra S; Dowling J; Shen K; Pluim J; Greer P; Salvado O; Fripp J, 2011, 'Automatic segmentation of the prostate in 3D magnetic resonance images using case specific deformable models', in Proceedings - 2011 International Conference on Digital Image Computing: Techniques and Applications, DICTA 2011, pp. 7 - 12, http://dx.doi.org/10.1109/DICTA.2011.10

Dowling JA; Fripp J; Chandra S; Pluim JPW; Lambert J; Parker J; Denham J; Greer PB; Salvado O, 2011, 'Fast automatic multi-atlas segmentation of the prostate from 3D MR images', in Lecture Notes in Computer Science (including subseries Lecture Notes in Artificial Intelligence and Lecture Notes in Bioinformatics), pp. 10 - 21, http://dx.doi.org/10.1007/978-3-642-23944-1_2

Lambert J; Dowling J; Menk F; Parker J; Capp A; Denham J; Salvado O; Greer PB, 2011, 'SU‐D‐110‐05: MR‐Based Dose Calculation for Prostate Radiotherapy Using Atlas‐ Based Auto‐Segmentation', in Medical Physics, pp. 3387 - 3388, http://dx.doi.org/10.1118/1.3611541

Dowling J; Lambert J; Parker J; Greer PB; Fripp J; Denham J; Ourselin S; Salvado O, 2010, 'Automatic MRI atlas-based external beam radiation therapy treatment planning for prostate cancer', in Lecture Notes in Computer Science (including subseries Lecture Notes in Artificial Intelligence and Lecture Notes in Bioinformatics), pp. 25 - 33, http://dx.doi.org/10.1007/978-3-642-15989-3_4

Tomaszewski JE, 2010, 'HistoCAD: Machine Facilitated Quantitative Histoimaging with Computer Assisted Diagnosis', in Madabhushi A; Dowling J; Yan PK; Fenster A; Abolmaesumi P; Hata N (eds.), PROSTATE CANCER IMAGING: COMPUTER-AIDED DIAGNOSIS, PROGNOSIS, AND INTERVENTION, SPRINGER-VERLAG BERLIN, PEOPLES R CHINA, Beijing, pp. 63 - 65, presented at International Workshop on Prostate Cancer Imaging, PEOPLES R CHINA, Beijing, 24 September 2010, https://www.webofscience.com/api/gateway?GWVersion=2&SrcApp=PARTNER_APP&SrcAuth=LinksAMR&KeyUT=WOS:000286796700008&DestLinkType=FullRecord&DestApp=ALL_WOS&UsrCustomerID=891bb5ab6ba270e68a29b250adbe88d1

Futterer JJ, 2010, 'Prostate Cancer MR Imaging', in Madabhushi A; Dowling J; Yan PK; Fenster A; Abolmaesumi P; Hata N (eds.), PROSTATE CANCER IMAGING: COMPUTER-AIDED DIAGNOSIS, PROGNOSIS, AND INTERVENTION, SPRINGER-VERLAG BERLIN, PEOPLES R CHINA, Beijing, pp. 1 - 3, presented at International Workshop on Prostate Cancer Imaging, PEOPLES R CHINA, Beijing, 24 September 2010, https://www.webofscience.com/api/gateway?GWVersion=2&SrcApp=PARTNER_APP&SrcAuth=LinksAMR&KeyUT=WOS:000286796700001&DestLinkType=FullRecord&DestApp=ALL_WOS&UsrCustomerID=891bb5ab6ba270e68a29b250adbe88d1

Acosta O; Dowling J; Cazoulat G; Simon A; Salvado O; De Crevoisier R; Haigron P, 2010, 'Atlas based segmentation and mapping of organs at risk from planning CT for the development of voxel-wise predictive models of toxicity in prostate radiotherapy', in Lecture Notes in Computer Science (including subseries Lecture Notes in Artificial Intelligence and Lecture Notes in Bioinformatics), pp. 42 - 51, http://dx.doi.org/10.1007/978-3-642-15989-3_6

Dowling J; Lambert J; Parker J; Fripp J; Denham JW; Wratten C; Capp A; Tang C; Bourgeat P; Salvado O; Greer PB, 2010, 'Sci—Sat AM(1): Planning — 05: Feasibility of Atlas‐Based Organ Segmentation and Electron Density Mapping for MRI‐Based Prostate Radiation Therapy Planning', in Medical Physics, pp. 3907, http://dx.doi.org/10.1118/1.3476205

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