By Associate Professor Paul Waters

Journal articles

Murtagh V; O''Meally D; Sankovic N; Delbridge ML; Kuroki Y; Boore JL; Toyoda A; Jordan KS; Pask AJ; Renfree MB; Fujiyama A; Graves JA; Waters PD, 2011, 'Evolutionary history of novel genes on the tammar wallaby Y chromosome: Implications for sex chromosome evolution', Genome Research, 22, pp. 498 - 507

Al Nadaf S; Waters PD; Koina E; Deakin JE; Jordan KS; Graves JAM; Waters P, 2010, 'Activity map of the tammar X chromosome shows that marsupial X inactivation is incomplete and escape is stochastic', Genome Biology, 11, pp. r122, http://dx.doi.org/10.1186/gb-2010-11-12-r122

Mohammadi A; Delbridge ML; Waters PD; Graves JA, 2009, 'Conservation of a chromosome arm in two distantly related marsupial species.', Cytogenetic and Genome Research, 124, pp. 147 - 150

Delbridge ML; Patel HR; Waters PD; Mcmillan DA; Graves JA, 2009, 'Does the human X contain a third evolutionary block? Origin of genes on human Xp11 and Xq28.', Genome Research, 19, pp. 1350 - 1360

Waters PD; Graves JA, 2009, 'Monotreme sex chromosomes – implications for the evolution of amniote sex chromosomes', Reproduction Fertility and Development, 21, pp. 943 - 951

Delgado CL; Waters PD; Gilbert C; Robinson TJ; Graves JA, 2009, 'Physical mapping of the elephant X chromosome: conservation of gene order over 105 million years.', Chromosome Research, 17, pp. 917 - 926

Ezaz T; Moritz B; Waters PD; Graves JA; Georges A; Sarre SD, 2009, 'The ZW sex microchromosomes of an Australian dragon lizard share no homology with those of other reptiles or birds', Chromosome Research, 17, pp. 965 - 973

Gilbert C; Pace JK; Waters PD, 2008, 'Target site analysis of RTE1_LA and its AfroSINE partner in the elephant genome', Gene, 425, pp. 1 - 8, http://dx.doi.org/10.1016/j.gene.2008.08.013

Waters PD; Robinson TJ, 2008, 'Evolution of the MammalianXChromosome', , http://dx.doi.org/10.1002/9780470015902.a0020739

Warren WC; Hillier LDW; Marshall Graves JA; Birney E; Ponting CP; Grützner F; Belov K; Miller W; Clarke L; Chinwalla AT; Yang SP; Heger A; Locke DP; Miethke P; Waters PD; Veyrunes F; Fulton L; Fulton B; Graves T; Wallis J; Puente XS; López-Otín C; Ordó̃ez GR; Eichler EE; Chen L; Cheng Z; Deakin JE; Alsop A; Thompson K; Kirby P; Papenfuss AT; Wakefield MJ; Olender T; Lancet D; Huttley GA; Smit AFA; Pask A; Temple-Smith P; Batzer MA; Walker JA; Konkel MK; Harris RS; Whittington CM; Wong ESW; Gemmell NJ; Buschiazzo E; Vargas Jentzsch IM; Merkel A; Schmitz J; Zemann A; Churakov G; Kriegs JO; Brosius J; Murchison EP; Sachidanandam R; Smith C; Hannon GJ; Tsend-Ayush E; McMillan D; Attenborough R; Rens W; Ferguson-Smith M; Lefèvre CM; Sharp JA; Nicholas KR; Ray DA; Kube M; Reinhardt R; Pringle TH; Taylor J; Jones RC; Nixon B; Dacheux JL; Niwa H; Sekita Y; Huang X; Stark A; Kheradpour P; Kellis M; Flicek P; Chen Y; Webber C; Hardison R; Nelson J; Hallsworth-Pepin K; Delehaunty K; Markovic C; Minx P; Feng Y; Kremitzki C; Mitreva M; Glasscock J; Wylie T; Wohldmann P; Thiru P; Nhan MN; Pohl CS; Smith SM; Hou S; Nefedov M, 2008, 'Genome analysis of the platypus reveals unique signatures of evolution (Nature (2008) 453, (175-183))', Nature, 455, pp. 256, http://dx.doi.org/10.1038/nature07253

Waters PD; Marshall Graves JA; Thompson K; Sankovic N; Ezaz T, 2008, 'Identification of cryptic sex chromosomes and isolation of X- and Y-borne genes.', Methods in molecular biology (Clifton, N.J.), 422, pp. 239 - 251, http://dx.doi.org/10.1007/978-1-59745-581-7_15

Waters PD; Dobigny G; Waddell PJ; Robinson TJ, 2008, 'LINE-1 elements: analysis by fluorescence in-situ hybridization and nucleotide sequences.', Methods in molecular biology (Clifton, N.J.), 422, pp. 227 - 237, http://dx.doi.org/10.1007/978-1-59745-581-7_14

Veyrunes F; Waters PD; Miethke P; Rens W; McMillan D; Alsop AE; Grutzner F; Deakin J; Whittington CM; Schatzkamer K; Kremitzki CL; Graves T; Ferguson-smith MA; Warren W; Marshall Graves JA, 2008, 'Bird-like sex chromosomes of platypus imply recent origin of mammal sex chromosomes.', Genome Research, 18, pp. 965 - 973

Deuve JL; Bennett NC; Ruiz-Herrera A; Waters PD; Britton-Davidian J; Robinson TJ, 2008, 'Dissection of a Y-autosome translocation in Cryptomys hottentotus (Rodentia, Bathyergidae) and implications for the evolution of a meiotic sex chromosome chain', Chromosoma, 177, pp. 211 - 217

Warren WC; Hillier LW; Graves JAM; Birney E; Ponting CP; Grutzner F; Belov K; Miller W; Clarke L; Chinwalla AT; Yang SP; Heger A; Locke D; Miethke P; Waters PD; Veyrunes F; Fulton L; Fulton B; Graves T; Wallis J; Puente XS; Lopez-Otin C; Ordonez C; Eichler EE; Chen L; Cheng Z; Deakin J; Alsop A; Thompson K; Kirby P; Papenfuss AT; Wakefield MJ; Olender T; Lancet D; Huttley GA; Smit AFA; Pask A; Temple-Smith P; Batzer MA; Walker JA; Konkel MK; Harris RS; Whittington CM; Wong ESW; Gemmell NJ; Buschiazzo E; Vargas Jentzsch IM; Merkel A; Schmitz J; Zemann A; Churakov G; Kriegs JO; Brosius J; Murchison EP; Sachidanandam R; Smith C; Hannon GJ; Tsend-Ayush E; McMillan D; Attenborough R; Rens W; Ferguson-Smith M; Lefevre CM; Sharp JA; Nicholas KR; Ray DA; Kube M; Reinhardt R; Pringle TH; Taylor J; Jones RC; Nixon B; Dacheux JL; Niwa H; Sekita Y; Huang X; Stark A; Kheradpour P; Kellis M; Flicek P; Chen Y; Webber C; Hardison R; Nelson J; Hallsworth-Pepin K; Delehaunty K; Markovic C; Minx P; Feng Y; Kremitzki C; Mitreva M; Glasscock J; Wylie T; Wohldmann P; Thiru P; Nhan MN; Pohl CS; Smith SM; Hou S; Renfree M; Mardis ER; Wilson RK, 2008, 'Genome analysis of the platypus reveals unique signatures of evolution', Nature, 453, pp. 175 - 184

Deakin J; Koina E; Waters PD; Doherty R; Patel VS; Delbridge ML; Dobson B; Fong J; Hu Y; Hurk C; Pask AJ; Shaw G; Smith C; Thompson K; Wakefield MJ; Yu H; Renfree M; Graves JA, 2008, 'Physical map of two tammar wallaby chromosomes: a strategy for mapping in non-model mammals', Chromosome Research, 16, pp. 1159 - 1175

Wallis MC; Waters PD; Graves JA, 2008, 'Sex determination in mammals-before and after the evolution of SRY', CMLS - Cellular and Molecular Life Sciences, 65, pp. 3182 - 3195

Gilbert C; Pace JK; Waters PD, 2008, 'Target site analysis of RTE1_LA and its AfroSINE partner in the elephant genome', Gene, 425, pp. 1 - 8

Kirby PJ; Greaves IK; Koina E; Waters PD; Marshall Graves JA, 2007, 'CORE-SINE blocks comprise a large fraction of monotreme genomes; implications for vertebrate chromosome evolution.', Chromosome Research, 15, pp. 975 - 984

Waters PD; Dobigny G; Waddell PJ; Robinson TJ, 2007, 'Evolutionary history of LINE-1 in the major clades of placental mammals', PLoS ONE, 2, pp. e158

Mikkelsen TS; Wakefield MJ; Aken B; Amemiya CT; Chang JL; Duke S; Garber M; Gentles AJ; Goodstadt L; Heger A; Jurka J; Kamal M; Mauceli E; Searle SM; Sharpe T; Baker ML; Batzer MA; Benos PV; Belov K; Clamp M; Cook A; Cuff J; Das R; Davidow L; Deakin J; Fazzari MJ; Glass JL; Grabherr M; Greally JM; Gu W; Hore TA; Huttley GA; Kleber M; Jirtle RL; Koina E; Lee JT; Mahony S; Marra MA; Miller RD; Nicholls RD; Oda M; Papenfuss AT; Parra ZE; Pollock DD; Ray DA; Schein JE; Speed TP; Thompson K; Vandeberg JL; Wade CM; Walker JA; Waters PD; Webber C; Weidman JR; Xie X; Zody MC; Graves JA; Ponting CP; Breen M; Samollow PB; Lander ES; Lindblad-Toh K, 2007, 'Genome of the marsupial Monodelphis domestica reveals innovation in non-coding sequences.', Nature, 447, pp. 167 - 177

Waters PD; Wallis MC; Marshall Graves JA, 2007, 'Mammalian sex – origin and evolution of the Y chromosome and SRY', Seminars in Cell and Developmental Biology, 18, pp. 389 - 400

Waters PD; Ruiz-Herrera A; Dobigny G; Garcia Caldes M; Robinson TJ, 2007, 'Sex chromosomes of basal placental mammals', Chromosoma, 116, pp. 511 - 518

Wallis MC; Waters PD; Delbridge ML; Kirby PJ; Pask A; Grutzner F; Rens W; Ferguson-smith MA; Graves JA, 2007, 'Sex determination in platypus and echidna: autosomal location of SOX3 confirms the absence of SRY from monotremes.', Chromosome Research, 15, pp. 949 - 959

Dobigny G; Waters PD; Robinson TJ, 2006, 'Absence of hypomethylation and LINE-1 amplification in a white x black rhinoceros hybrid', Genetica, 127, pp. 81 - 86, http://dx.doi.org/10.1007/s10709-005-2483-3

Waters PD; Delbridge ML; Deakin JE; El-Mogharbel N; Kirby PJ; Carvalho-Silva DR; Marshall Graves JA, 2005, 'Autosomal location of genes from the conserved mammalian X in the platypus (Ornithorhynchus anatinus): Implications for mammalian sex chromosome evolution', Chromosome Research, 13, pp. 401 - 410, http://dx.doi.org/10.1007/s10577-005-0978-5

Dobigny G; Ozouf-Costaz C; Waters PD; Bonillo C; Coutanceau JP; Volobouev V, 2004, 'LINE-1 amplification accompanies explosive genome repatterning in rodents', Chromosome Research, 12, pp. 787 - 793, http://dx.doi.org/10.1007/s10577-005-5265-y

Carvalho-Silva DR; O'Neill RJW; Brown JD; Huynh K; Waters PD; Pask AJ; Delbridge ML; Marshall Graves JA, 2004, 'Molecular characterization and evolution of X and Y-borne ATRX homologues in American marsupials', Chromosome Research, 12, pp. 795 - 804, http://dx.doi.org/10.1007/s10577-005-5376-5

Waters PD; Dobigny G; Pardini AT; Robinson TJ, 2004, 'LINE-1 distribution in Afrotheria and Xenarthra: Implications for understanding the evolution of LINE-1 in eutherian genomes', Chromosoma, 113, pp. 137 - 144, http://dx.doi.org/10.1007/s00412-004-0301-9

Waters PD; Sankovic N; Kirby PJ; Delbridge ML; Graves JA, 2003, 'Assignment of the thymosin beta 4 X/Y chromosome (TMSB4X/Y) gene to tammar wallaby chromosome 5p by fluorescence in situ hybridisation', Cytogenetic and Genome Research, 103, http://dx.doi.org/10.1159/000076317

Waters PD; Kirby PJ; Graves JAM, 2002, 'Assignment of the protocadherin 20 (PCDH20) gene to tammar wallaby chromosome 6q by fluorescence in situ hybridisation', Cytogenetic and Genome Research, 98, http://dx.doi.org/10.1159/000071058

Kirby PJ; Waters PD; Delbridge M; Svartman M; Stewart AN; Nagai K; Graves JAM, 2002, 'Cloning and mapping of platypus SOX2 and SOX14: Insights into SOX group B evolution', Cytogenetic and Genome Research, 98, pp. 96 - 100, http://dx.doi.org/10.1159/000068539

Waters PD; Kirby PJ; Graves JAM, 2001, 'Assignment¹ of the SMARCF1 gene to tammar wallaby chromosome 5q by fluorescence in situ hybridisation', Cytogenetics and Cell Genetics, 93, pp. 315 - 316

Waters PD; Duffy B; Frost CJ; Delbridge ML; Graves JAM, 2001, 'The human Y chromosome derives largely from a single autosomal region added to the sex chromosomes 80-130 million years ago', Cytogenetics and Cell Genetics, 92, pp. 74 - 79, http://dx.doi.org/10.1159/000056872

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