By Dr Janet Newman

Journal articles

Newman J; Fazio VJ; Lawson B; Peat TS, 2010, 'The C6 Web Tool: A resource for the rational selection of crystallization conditions', Crystal Growth and Design, 10, pp. 2785 - 2792, http://dx.doi.org/10.1021/cg1004209

Dransfield DT; Cohen EH; Chang Q; Sparrow LG; Bentley JD; Dolezal O; Xiao X; Peat TS; Newman J; Pilling PA; Phan T; Priebe I; Brierley GV; Kastrapeli N; Kopacz K; Martik D; Wassaf D; Rank D; Conley G; Huang Y; Adams TE; Cosgrove L, 2010, 'A human monoclonal antibody against insulin-like growth factor-II blocks the growth of human hepatocellular carcinoma cell lines in vitro and in vivo', Molecular Cancer Therapeutics, 9, pp. 1809 - 1819, http://dx.doi.org/10.1158/1535-7163.MCT-09-1134

Chhabra S; Newman J; Peat TS; Fernley RT; Caine J; Simpson JS; Swarbrick JD, 2010, 'Crystallization and preliminary X-ray analysis of 6 - Hydroxymethyl-7,8- dihydropterin pyrophosphokinase from Staphylococcus aureus', Acta Crystallographica Section F: Structural Biology and Crystallization Communications, 66, pp. 575 - 578, http://dx.doi.org/10.1107/S1744309110010857

Robert R; Streltsov VA; Newman J; Pearce LA; Wark KL; Dolezal O, 2010, 'Germline humanization of a murine Aβ antibody and crystal structure of the humanized recombinant Fab fragment', Protein Science, 19, pp. 299 - 308, http://dx.doi.org/10.1002/pro.312

Newman J; Fazio VJ; Caradoc-Davies TT; Branson K; Peat TS, 2009, 'Practical aspects of the SAMPL challenge: Providing an extensive experimental data set for the modeling community', Journal of Biomolecular Screening, 14, pp. 1245 - 1250, http://dx.doi.org/10.1177/1087057109348220

Newman J; Cohen EH; Cosgrove L; Kopacz K; Dransfield DT; Adams TE; Peat TS, 2009, 'Crystallization and preliminary X-ray analysis of the complexes between a Fab and two forms of human insulin-like growth factor II', Acta Crystallographica Section F: Structural Biology and Crystallization Communications, 65, pp. 945 - 948, http://dx.doi.org/10.1107/S1744309109024932

Atkinson SC; Dobson RCJ; Newman JM; Gorman MA; Dogovski C; Parker MW; Perugini MA, 2009, 'Crystallization and preliminary X-ray analysis of dihydrodipicolinate synthase from Clostridium botulinum in the presence of its substrate pyruvate', Acta Crystallographica Section F: Structural Biology and Crystallization Communications, 65, pp. 253 - 255, http://dx.doi.org/10.1107/S1744309108039018

Newman J; Pham TM; Peat TS, 2008, 'Phoenito experiments: Combining the strengths of commercial crystallization automation', Acta Crystallographica Section F: Structural Biology and Crystallization Communications, 64, pp. 991 - 996, http://dx.doi.org/10.1107/S1744309108029667

Dobson RCJ; Atkinson SC; Gorman MA; Newman JM; Parker MW; Perugini MA, 2008, 'The purification, crystallization and preliminary X-ray diffraction analysis of dihydrodipicolinate synthase from Clostridium botulinum', Acta Crystallographica Section F: Structural Biology and Crystallization Communications, 64, pp. 206 - 208, http://dx.doi.org/10.1107/S1744309108002819

Thakur AS; Robin G; Guncar G; Saunders NFW; Newman J; Martin JL; Kobe B, 2007, 'Improved success of sparse matrix protein crystallization screening with heterogeneous nucleating agents', PLoS ONE, 2, http://dx.doi.org/10.1371/journal.pone.0001091

Newman J; Xu J; Willis MC, 2007, 'Initial evaluations of the reproducibility of vapor-diffusion crystallization', Acta Crystallographica Section D: Biological Crystallography, 63, pp. 826 - 832, http://dx.doi.org/10.1107/S0907444907025784

Newman J, 2006, 'A review of techniques for maximizing diffraction from a protein crystal in stilla', Acta Crystallographica Section D: Biological Crystallography, 62, pp. 27 - 31, http://dx.doi.org/10.1107/S0907444905032130

Peat TS; Christopher JA; Newman J, 2005, 'Tapping the Protein Data Bank for crystallization information', Acta Crystallographica Section D: Biological Crystallography, 61, pp. 1662 - 1669, http://dx.doi.org/10.1107/S0907444905033202

Newman J; Egan D; Walter TS; Meged R; Berry I; Jelloul MB; Sussman JL; Stuart DI; Perrakis A, 2005, 'Towards rationalization of crystallization screening for small- To medium-sized academic laboratories: The PACT/JCSG+ strategy', Acta Crystallographica Section D: Biological Crystallography, 61, pp. 1426 - 1431, http://dx.doi.org/10.1107/S0907444905024984

Badger J; Sauder JM; Adams JM; Antonysamy S; Bain K; Bergseid MG; Buchanan SG; Buchanan MD; Batiyenko Y; Christopher JA; Emtage S; Eroshkina A; Feil I; Furlong EB; Gajiwala KS; Gao X; He D; Hendle J; Huber A; Hoda K; Kearins P; Kissinger C; Laubert B; Lewis HA; Lin J; Loomis K; Lorimer D; Louie G; Maletic M; Marsh CD; Miller I; Molinari J; Muller-Dieckmann HJ; Newman JM; Noland BW; Pagarigan B; Park F; Peat TS; Post KW; Radojicic S; Ramos A; Romero R; Rutter ME; Sanderson WE; Schwinn KD; Tresser J; Winhoven J; Wright TA; Wu L; Xu J; Harris TJR, 2005, 'Structural analysis of a set of proteins resulting from a bacterial genomics project', Proteins: Structure, Function and Genetics, 60, pp. 787 - 796, http://dx.doi.org/10.1002/prot.20541

Newman J, 2005, 'Expanding screening space through the use of alternative reservoirs in vapor-diffusion experiments', Acta Crystallographica Section D: Biological Crystallography, 61, pp. 490 - 493, http://dx.doi.org/10.1107/S0907444905002726

Newman J, 2004, 'Novel buffer systems for macromolecular crystallization', Acta Crystallographica Section D: Biological Crystallography, 60, pp. 610 - 612, http://dx.doi.org/10.1107/S0907444903029640

Peat T; De la Fortelle E; Culpepper J; Newman J, 2002, 'From information management to protein annotation: Preparing protein structures for drug discovery', Acta Crystallographica Section D: Biological Crystallography, 58, pp. 1968 - 1970, http://dx.doi.org/10.1107/S0907444902016852

Noland BW; Newman JM; Hendle J; Badger J; Christopher JA; Tresser J; Buchanan MD; Wright TA; Rutter ME; Sanderson WE; Müller-Dieckmann HJ; Gajiwala KS; Buchanan SG, 2002, 'Structural studies of Salmonella typhimurium ArnB (PmrH) aminotransferase: A 4-amino-4-deoxy-L-arabinose lipopolysaccharide-modifying enzyme', Structure, 10, pp. 1569 - 1580, http://dx.doi.org/10.1016/S0969-2126(02)00879-1

Adams JA; Jewell D; Jorgensen K; Mickley M; Newman JM, 2002, 'Image capture and analysis for macromolecular crystal growth using RoboMicroscope™ II', JALA - Journal of the Association for Laboratory Automation, 7, pp. 36 - 40, http://dx.doi.org/10.1016/S1535-5535(04)00224-2

Marek J; Vevodova J; Smatanova IK; Nagata Y; Svensson LA; Newman J; Takagi M; Damborsky J, 2000, 'Crystal structure of the haloalkane dehalogenase from Sphingomonas paucimobilis UT26', Biochemistry, 39, pp. 14082 - 14086, http://dx.doi.org/10.1021/bi001539c

Peat TS; Newman JM, 2000, 'Structural genomics in the post-genomics era: The shapes of things to come', Current Opinion in Drug Discovery and Development, 3, pp. 399 - 407

Newman J; Peat TS; Richard R; Kan L; Swanson PE; Affholter JA; Holmes IH; Schindler JF; Unkefer CJ; Terwilliger TC, 1999, 'Haloalkane dehalogenases: Structure of a Rhodococcus enzyme', Biochemistry, 38, pp. 16105 - 16114, http://dx.doi.org/10.1021/bi9913855

Peat TS; Newman J; Waldo GS; Berendzen J; Terwilliger TC, 1998, 'Structure of translation initiation factor 5A from Pyrobaculum aerophilum at 1.75 Å resolution', Structure, 6, pp. 1207 - 1214, http://dx.doi.org/10.1016/S0969-2126(98)00120-8

Ruscetti T; Newman J; Peat TS; Francis J; Nolan R; Terwilliger TC; Peterson SR; Lehnert BE, 1998, 'A nondenaturing purification scheme for the DNA-binding domain of poly(ADP-ribose) polymerase, a structure-specific DNA-binding protein', Protein Expression and Purification, 14, pp. 79 - 86, http://dx.doi.org/10.1006/prep.1998.0919

Terwilliger TC; Waldo G; Peat TS; Newman JM; Chu K; Berendzen J, 1998, 'Class-directed structure determination: Foundation for a protein structure initiative', Protein Science, 7, pp. 1851 - 1856, http://dx.doi.org/10.1002/pro.5560070901

Rosenthal PB; Formanowski F; Treharne AC; Newman J; Skehel JJ; MeierEwert H; Wiley DC, 1996, 'Crystallization and preliminary X-ray diffraction studies of the influenza C virus glycoprotein', ACTA CRYSTALLOGRAPHICA SECTION D-STRUCTURAL BIOLOGY, 52, pp. 1041 - 1045, http://dx.doi.org/10.1107/S0907444996005021

GUTTERIDGE S; NEWMAN J; HERRMANN C; RHOADES D, 1995, 'THE CRYSTAL-STRUCTURES OF RUBISCO AND OPPORTUNITIES FOR MANIPULATING PHOTOSYNTHESIS', JOURNAL OF EXPERIMENTAL BOTANY, 46, pp. 1261 - 1267, http://dx.doi.org/10.1093/jxb/46.special_issue.1261

Newman J; Gutteridge S, 1994, 'Structure of an effector-induced inactivated state of ribulose 1,5-bisphosphate carboxylase/oxygenase: the binary complex between enzyme and xylulose 1,5-bisphosphate', Structure, 2, pp. 495 - 502, http://dx.doi.org/10.1016/S0969-2126(00)00050-2

Newman J; Gutteridge S, 1993, 'The X-ray structure of Synechococcus ribulose-bisphosphate carboxylase/oxygenase-activated quaternary complex at 2.2-Å resolution', Journal of Biological Chemistry, 268, pp. 25876 - 25886

NEWMAN J; BRANDEN CI; JONES TA, 1993, 'STRUCTURE DETERMINATION AND REFINEMENT OF RIBULOSE 1,5-BISPHOSPHATE CARBOXYLASE/OXYGENASE FROM SYNECHOCOCCUS PCC6301', ACTA CRYSTALLOGRAPHICA SECTION D-BIOLOGICAL CRYSTALLOGRAPHY, 49, pp. 548 - 560, http://dx.doi.org/10.1107/S090744499300530X

Newman JM; Binns M; Hambley TW; Freeman HC, 1991, 'Redetermination of the Crystal Structure of Hexaamminecobalt(II) Chloride', Inorganic Chemistry, 30, pp. 3499 - 3502, http://dx.doi.org/10.1021/ic00018a021

Newman J; Gutteridge S, 1990, 'The purification and preliminary X-ray diffraction studies of recombinant synechococcus ribulose-1,5-bisphosphate carboxylase/oxygenase from Escherichia coli', Journal of Biological Chemistry, 265, pp. 15154 - 15159

NEWMAN JM; BEAR CA; HAMBLEY TW; FREEMAN HC, 1990, 'STRUCTURE OF BIS(GLYCINATO)ZINC(II) MONOHYDRATE, A 5-COORDINATE ZINC(II) COMPLEX', ACTA CRYSTALLOGRAPHICA SECTION C-CRYSTAL STRUCTURE COMMUNICATIONS, 46, pp. 44 - 48, http://dx.doi.org/10.1107/S0108270189005664

Conference Papers

Peat TS; Dennis M; Dolezal O; Newman J; Morrow B; Monahan B; Foitzik R; Khoo PS; Stupple P; Street I, 2018, 'Fragment screening for a protein-protein interaction inhibitor to WDR5', in ACTA CRYSTALLOGRAPHICA A-FOUNDATION AND ADVANCES, INT UNION CRYSTALLOGRAPHY, pp. A139 - A139, http://dx.doi.org/10.1107/S0108767318098604

Thamali Lekamge BM; Sowmya A; Newman J, 2017, 'Prediction of protein X-ray crystallisation trial image time-courses', in ICPRAM 2017 - Proceedings of the 6th International Conference on Pattern Recognition Applications and Methods, pp. 663 - 668, http://dx.doi.org/10.5220/0006246506630668

Lekamge BMT; Sowmya A; Mele K; Fazio VJ; Newman J, 2013, 'Classification of protein crystallisation images using texture-based statistical features', in AIP Conference Proceedings, pp. 270 - 276, http://dx.doi.org/10.1063/1.4825019

Vallotton P; Lovell D; Newman J, 2011, 'An observation about circular shortest paths: Dealing with additional constraints using branch and bound', in Proceedings - 2011 International Conference on Digital Image Computing: Techniques and Applications, DICTA 2011, pp. 513 - 517, http://dx.doi.org/10.1109/DICTA.2011.92

Preprints

Rosa N; Watkins C; Newman J, 2022, Moving beyond MARCO, http://dx.doi.org/10.1101/2022.09.28.509867

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