By Dr Merridee Ann Wouters

Journal articles

Young ND; Harris TJ; Evangelista M; Tran S; Wouters MA; Soares da Costa TP; Kershaw NJ; Gasser RB; Smith BJ; Lee EF; Fairlie WD, 2020, 'Diversity in the intrinsic apoptosis pathway of nematodes', Communications Biology, 3, http://dx.doi.org/10.1038/s42003-020-01208-5

Poulos RC; Hains PG; Shah R; Lucas N; Xavier D; Manda SS; Anees A; Koh JMS; Mahboob S; Wittman M; Williams SG; Sykes EK; Hecker M; Dausmann M; Wouters MA; Ashman K; Yang J; Wild PJ; deFazio A; Balleine RL; Tully B; Aebersold R; Speed TP; Liu Y; Reddel RR; Robinson PJ; Zhong Q, 2020, 'Strategies to enable large-scale proteomics for reproducible research', Nature Communications, 11, http://dx.doi.org/10.1038/s41467-020-17641-3

Li Y; Wang W; Wang T; Wouters MA; Yin Y; Jiao Z; Ma L; Zhang F, 2019, 'Regulation through MicroRNAs in Response to Low-Energy N ⁺ Ion Irradiation in Oryza sativa', Radiation Research, 191, pp. 189 - 200, http://dx.doi.org/10.1667/RR15125.1

Haworth NL; Wouters MJ; Hunter MO; Ma L; Wouters MA, 2019, 'Cross-strand disulfides in the hydrogen bonding site of antiparallel β-sheet (aCSDhs): Forbidden disulfides that are highly strained, easily broken', Protein Science, 28, pp. 239 - 256, http://dx.doi.org/10.1002/pro.3545

Eissmann MF; Dijkstra C; Wouters MA; Baloyan D; Mouradov D; Nguyen PM; Davalos-Salas M; Putoczki TL; Sieber OM; Mariadason JM; Ernst M; Masson F, 2018, 'Interleukin 33 signaling restrains sporadic colon cancer in an interferon-g–dependent manner', Cancer Immunology Research, 6, pp. 409 - 421, http://dx.doi.org/10.1158/2326-6066.CIR-17-0218

Mohanasundaram KA; Grover MP; Crowley TM; Goscinski A; Wouters MA, 2017, 'Mapping genotype–phenotype associations of nsSNPs in coiled-coil oligomerization domains of the human proteome', Human Mutation, 38, pp. 1378 - 1393, http://dx.doi.org/10.1002/humu.23252

Haworth NL; Wouters MA, 2015, 'Cross-strand disulfides in the non-hydrogen bonding site of antiparallel β-sheet (aCSDns): poised for biological switching', RSC Advances, 5, pp. 86303 - 86321, http://dx.doi.org/10.1039/c5ra10672a

Bouveret R; Waardenberg AJ; Schonrock N; Ramialison M; Doan T; de jong D; Bondue A; Kaur G; Mohamed S; Fonoudi H; Chen CM; Wouters MA; Bhattacharya S; Plachta N; Dunwoodie SL; Chapman G; Blanpain C; Harvey RP, 2015, 'NKX2-5 mutations causative for congenital heart disease retain functionality and are directed to hundreds of targets', eLife, 4, pp. e06942, http://dx.doi.org/10.7554/eLife.06942

Mohanasundaram KA; Haworth NL; Grover MP; Crowley TM; Goscinski A; Wouters MA, 2015, 'Potential role of glutathione in evolution of thiol-based redox signaling sites in proteins', Frontiers in Pharmacology, 6, http://dx.doi.org/10.3389/fphar.2015.00001

Ballouz S; Liu JY; Oti M; Gaeta B; Fatkin D; Bahlo M; Wouters MA, 2014, 'Candidate disease gene prediction using : application to a genome-wide association study on coronary artery disease', Molecular Genetics & Genomic Medicine, 2, pp. 44 - 57, http://dx.doi.org/10.1002/mgg3.40

Haworth NL; Wouters MA, 2013, 'Between-strand disulfides: Forbidden disulfides linking adjacent β-strands', RSC Advances, 3, pp. 24680 - 24705, http://dx.doi.org/10.1039/c3ra42486c

Ballouz S; Liu JY; George RA; Bains N; Liu A; Oti M; Gaeta B; Fatkin D; Wouters MA, 2013, 'Gentrepid V2.0: A web server for candidate disease gene prediction', BMC Bioinformatics, 14, pp. 249, http://dx.doi.org/10.1186/1471-2105-14-249

Pang CN; Lin K; Wouters MA; Heringa J; George RA, 2007, 'Identifying foldable regions in protein sequence from the hydrophobic signal', Nucl. Acids Res., 36, pp. 578 - 588, http://dx.doi.org/10.1093/nar/gkm1070

Haworth NL; Feng LL; Wouters MA, 2006, 'High torsional energy disulfides: Relationship between cross-strand disulfides and right-handed staples', Journal of Bioinformatics and Computational Biology, 4, pp. 155 - 168, http://dx.doi.org/10.1142/S0219720006001734

Wouters MA; Liu K; Riek P; Husain A, 2003, 'A despecialization step underlying evolution of a family of serine proteases', Molecular Cell, 12, pp. 343 - 354, http://dx.doi.org/10.1016/S1097-2765(03)00308-3

Liu X; Fernandez M; Wouters MA; Heyberger S; Husain A, 2001, 'Arg¹⁰⁹⁸ Is Critical for the Chloride Dependence of Human Angiotensin I-converting Enzyme C-domain Catalytic Activity', Journal of Biological Chemistry, 276, pp. 33518 - 33525, http://dx.doi.org/10.1074/jbc.M101495200

Conference Papers

Grover MP; Ballouz S; Mohanasundaram KA; George RA; Goscinski A; Crowley TM; Sherman CDH; Wouters MA, 2014, 'Novel therapeutics for coronary artery disease from genome-wide association study data', in BMC Medical Genomics, Springer Nature, PEOPLES R CHINA, Qingdao, pp. s1, presented at 4th Annual Translational Bioinformatics Conference (TBC) / 8th International Conference on Systems Biology (ISB), PEOPLES R CHINA, Qingdao, 24 October 2014 - 27 October 2014, http://dx.doi.org/10.1186/1755-8794-8-S2-S1

Hulugalle DV; Haworth NL; Ballouz S; Liu JY; Fan SW; Wouters MA, 2011, 'The Association Between Zn Fingers and Forbidden Disulfide Motifs', in FREE RADICAL BIOLOGY AND MEDICINE, ELSEVIER SCIENCE INC, GA, Atlanta, pp. S21 - S21, presented at 18th Annual Meeting of the Society-for-Free-Radical-Biology-and-Medicine (SFRBM), GA, Atlanta, 16 November 2011 - 20 November 2011, http://dx.doi.org/10.1016/j.freeradbiomed.2011.10.047

Hulugalle DVK; Haworth NL; Ballouz S; Liu JY; Fan SW; Wouters MA, 2011, 'Potential Role of Forbidden Disulfides in Zn Signalling', in BIOPHYSICAL JOURNAL, CELL PRESS, MD, Baltimore, pp. 56 - 56, presented at 55th Annual Meeting of the Biophysical-Society, MD, Baltimore, 05 March 2011 - 09 March 2011, https://www.webofscience.com/api/gateway?GWVersion=2&SrcApp=PARTNER_APP&SrcAuth=LinksAMR&KeyUT=WOS:000306288600288&DestLinkType=FullRecord&DestApp=ALL_WOS&UsrCustomerID=891bb5ab6ba270e68a29b250adbe88d1

Hulugalle DV; Haworth NL; Ballouz S; Liu JY; Fan SW; Wouters MA, 2010, 'The Association Between Zn Fingers and Forbidden Disulfide Motifs', in FREE RADICAL BIOLOGY AND MEDICINE, ELSEVIER SCIENCE INC, FL, Orlando, pp. S130 - S131, presented at 17th Annual Meeting of the Society-for-Free-Radical-Biology-Medicine /15th Biennial Meeting of the Society-for-Free-Radical-Research-International, FL, Orlando, 17 November 2010 - 21 November 2010, http://dx.doi.org/10.1016/j.freeradbiomed.2010.10.358

Fan SW; George RA; Haworth NL; Feng LL; Liu JY; Wouters MA, 2010, 'Conformational Transitions Associated with Different Redox States of Di-Thiol Pairs', in BIOPHYSICAL JOURNAL, CELL PRESS, pp. 444A - 444A, http://dx.doi.org/10.1016/j.bpj.2009.12.2413

Fan SW; George RA; Haworth NL; Feng LL; Liu JY; Wouters MA, 2009, 'Conformational Transitions Of Disordered Proteins Associated With Different Redox States Of Di-thiol Pairs', in BIOPHYSICAL JOURNAL, CELL PRESS, pp. 74A - 74A, http://dx.doi.org/10.1016/j.bpj.2008.12.281

Conference Presentations

Grover MP; Ballouz S; Mohanasundaram KA; George RA; H Sherman CD; Crowley TM; Wouters MA, 2013, 'Identification of novel therapeutics for complex diseases from genome-wide association data', presented at 3rd Annual Translational Bioinformatics Conference (TBC) / ISCB-Asia, SOUTH KOREA, Seoul, 02 October 2013 - 04 October 2013, http://dx.doi.org/10.1186/1755-8794-7-S1-S8

Preprints

da Silva RF; Bard D; Chard K; de Witt S; Foster IT; Gibbs T; Goble C; Godoy W; Gustafsson J; Haus U-U; Hudson S; Jha S; Los L; Paine D; Suter F; Ward L; Wilkinson S; Amaris M; Babuji Y; Bader J; Balin R; Balouek D; Beecroft S; Belhajjame K; Bhattarai R; Brewer W; Brunk P; Caino-Lores S; Casanova H; Cassol D; Coleman J; Coleman T; Colonnelli I; Da Silva AA; de Oliveira D; Elahi P; Elfaramawy N; Elwasif W; Etz B; Fahringer T; Ferreira W; Filgueira R; Tande JF; Gadelha L; Gallo A; Garijo D; Georgiou Y; Gritsch P; Grubel P; Gueroudji A; Guilloteau Q; Hamalainen C; Enriquez RH; Huet L; Kesling KH; Iborra P; Jahangiri S; Janssen J; Jordan J; Kanwal S; Kunstmann L; Lehmann F; Leser U; Li C; Liu P; Luettgau J; Lupat R; Fernandez JM; Maheshwari K; Malik T; Marquez J; Matsuda M; Medic D; Mohammadi S; Mulone A; Navarro J-L; Ng KW; Noelp K; Kinoshita BP; Prout R; Crusoe MR; Ristov S; Robila S; Rosendo D; Rowell B; Rybicki J; Sanchez H; Saurabh N; Saurav SK; Scogland T; Senanayake D; Shin W; Sirvent R; Skluzacek T; Sly-Delgado B; Soiland-Reyes S; Souza A; Souza R; Talia D; Tallent N; Thamsen L; Titov M; Tovar B; Vahi K; Vardar-Irrgang E; Vartina E; Wang Y; Wouters M; Yu Q; Bkhetan ZA; Zulfiqar M, 2024, Workflows Community Summit 2024: Future Trends and Challenges in Scientific Workflows, http://dx.doi.org/10.48550/arxiv.2410.14943

Wilkinson SR; Aloqalaa M; Belhajjame K; Crusoe MR; Kinoshita BDP; Gadelha L; Garijo D; Gustafsson OJR; Juty N; Kanwal S; Khan FZ; Köster J; Gehlen KP-V; Pouchard L; Rannow RK; Soiland-Reyes S; Soranzo N; Sufi S; Sun Z; Vilne B; Wouters MA; Yuen D; Goble C, 2024, Applying the FAIR Principles to Computational Workflows, http://dx.doi.org/10.48550/arxiv.2410.03490

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