Select Publications

Journal articles

Ni BJ; Rittmann BE; Yu HQ, 2011, 'Soluble microbial products and their implications in mixed culture biotechnology', Trends in Biotechnology, 29, pp. 454 - 463, http://dx.doi.org/10.1016/j.tibtech.2011.04.006

Ni BJ; Zeng RJ; Fang F; Xie WM; Xu J; Sheng GP; Sun YJ; Yu HQ, 2011, 'Evaluation on factors influencing the heterotrophic growth on the soluble microbial products of autotrophs', Biotechnology and Bioengineering, 108, pp. 804 - 812, http://dx.doi.org/10.1002/bit.23012

Ni BJ; Sheng GP; Yu HQ, 2011, 'Model-based characterization of endogenous maintenance, cell death and predation processes of activated sludge in sequencing batch reactors', Chemical Engineering Science, 66, pp. 747 - 754, http://dx.doi.org/10.1016/j.ces.2010.11.033

Ni BJ; Liu H; Nie YQ; Zeng RJ; Du GC; Chen J; Yu HQ, 2011, 'Coupling glucose fermentation and homoacetogenesis for elevated acetate production: Experimental and mathematical approaches', Biotechnology and Bioengineering, 108, pp. 345 - 353, http://dx.doi.org/10.1002/bit.22908

Liu SG; Ni BJ; Li WW; Sheng GP; Tang Y; Yu HQ, 2011, 'Modeling of the Contact-Adsorption-Regeneration (CAR) activated sludge process', Bioresource Technology, 102, pp. 2199 - 2205, http://dx.doi.org/10.1016/j.biortech.2010.10.003

Meng F; Zhou Z; Ni BJ; Zheng X; Huang G; Jia X; Li S; Xiong Y; Kraume M, 2011, 'Characterization of the size-fractionated biomacromolecules: Tracking their role and fate in a membrane bioreactor', Water Research, 45, pp. 4661 - 4671, http://dx.doi.org/10.1016/j.watres.2011.06.026

Ni BJ; Yu HQ, 2010, 'Mathematical modeling of aerobic granular sludge: A review', Biotechnology Advances, 28, pp. 895 - 909, http://dx.doi.org/10.1016/j.biotechadv.2010.08.004

Zhao BH; Mu Y; Dong F; Ni BJ; Zhao JB; Sheng GP; Yu HQ; Li YY; Harada H, 2010, 'Dynamic modeling the anaerobic reactor startup process', Industrial and Engineering Chemistry Research, 49, pp. 7193 - 7200, http://dx.doi.org/10.1021/ie1001857

Fang F; Ni BJ; Xie WM; Sheng GP; Liu SG; Tong ZH; Yu HQ, 2010, 'An integrated dynamic model for simulating a full-scale municipal wastewater treatment plant under fluctuating conditions', Chemical Engineering Journal, 160, pp. 522 - 529, http://dx.doi.org/10.1016/j.cej.2010.03.063

Ni BJ; Xie WM; Liu SG; Yu HQ; Gan YP; Zhou J; Hao EC, 2010, 'Development of a mechanistic model for biological nutrient removal activated sludge systems and application to a full-scale WWTP', AIChE Journal, 56, pp. 1626 - 1638, http://dx.doi.org/10.1002/aic.12066

Xie WM; Ni BJ; Zeng RJ; Sheng GP; Yu HQ; Song J; Le DZ; Bi XJ; Liu CQ; Yang M, 2010, 'Formation of soluble microbial products by activated sludge under anoxic conditions', Applied Microbiology and Biotechnology, 87, pp. 373 - 382, http://dx.doi.org/10.1007/s00253-010-2563-x

Ni BJ; Rittmann BE; Yu HQ, 2010, 'Modeling predation processes in activated sludge', Biotechnology and Bioengineering, 105, pp. 1021 - 1030, http://dx.doi.org/10.1002/bit.22632

Ni BJ; Hu BL; Fang F; Xie WM; Kartal B; Liu XW; Sheng GP; Jetten M; Zheng P; Yu HQ, 2010, 'Microbial and physicochemical characteristics of compact anaerobic ammonium-oxidizing granules in an upflow anaerobic sludge blanket reactor', Applied and Environmental Microbiology, 76, pp. 2652 - 2656, http://dx.doi.org/10.1128/AEM.02271-09

Ni BJ; Sheng GP; Li XY; Yu HQ, 2010, 'Quantitative simulation of the granulation process of activated sludge for wastewater treatment', Industrial and Engineering Chemistry Research, 49, pp. 2864 - 2873, http://dx.doi.org/10.1021/ie901252k

Ni BJ; Yu HQ, 2010, 'Modeling and simulation of the formation and utilization of microbial products in aerobic granular sludge', AIChE Journal, 56, pp. 546 - 559, http://dx.doi.org/10.1002/aic.11888

Xie WM; Ni BJ; Sheng GP; Yu HQ; Yang M, 2010, 'Substrate consumption and excess sludge reduction of activated sludge in the presence of uncouplers: A modeling approach', Applied Microbiology and Biotechnology, 85, pp. 2001 - 2008, http://dx.doi.org/10.1007/s00253-009-2255-6

Ni BJ; Rittmann BE; Yu HQ, 2010, 'Evaluation on the impacts of predators on biomass components and oxygen uptake in sequencing batch reactor and continuous systems', Water Research, 44, pp. 4616 - 4622, http://dx.doi.org/10.1016/j.watres.2010.05.048

Ni BJ; Zeng RJ; Fang F; Xie WM; Sheng GP; Yu HQ, 2010, 'Fractionating soluble microbial products in the activated sludge process', Water Research, 44, pp. 2292 - 2302, http://dx.doi.org/10.1016/j.watres.2009.12.025

Hu BL; Zheng P; Tang CJ; Chen JW; van der Biezen E; Zhang L; Ni BJ; Jetten MSM; Yan J; Yu HQ; Kartal B, 2010, 'Identification and quantification of anammox bacteria in eight nitrogen removal reactors', Water Research, 44, pp. 5014 - 5020, http://dx.doi.org/10.1016/j.watres.2010.07.021

Ni BJ; Rittmann BE; Fang F; Xu J; Yu HQ, 2010, 'Long-term formation of microbial products in a sequencing batch reactor', Water Research, 44, pp. 3787 - 3796, http://dx.doi.org/10.1016/j.watres.2010.04.035

Ni BJ; Yu HQ, 2009, 'A thermodynamic analysis of the activated sludge process: Application to soybean wastewater treatment in a sequencing batch reactor', AIChE Journal, 55, pp. 2737 - 2745, http://dx.doi.org/10.1002/aic.11875

Ni BJ; Xie WM; Liu SG; Yu HQ; Wang YZ; Wang G; Da XL, 2009, 'Modeling and simulation of the sequencing batch reactor at a full-scale municipal wastewater treatment plant', AIChE Journal, 55, pp. 2186 - 2196, http://dx.doi.org/10.1002/aic.11820

Fang F; Ni BJ; Li XY; Sheng GP; Yu HQ, 2009, 'Kinetic analysis on the two-step processes of AOB and NOB in aerobic nitrifying granules', Applied Microbiology and Biotechnology, 83, pp. 1159 - 1169, http://dx.doi.org/10.1007/s00253-009-2011-y

Ni BJ; Chen YP; Liu SY; Fang F; Xie WM; Yu HQ, 2009, 'Modeling a granule-based anaerobic ammonium oxidizing (ANAMMOX) process', Biotechnology and Bioengineering, 103, pp. 490 - 499, http://dx.doi.org/10.1002/bit.22279

Ni BJ; Zeng RJ; Fang F; Xu J; Sheng GP; Yu HQ, 2009, 'A novel approach to evaluate the production kinetics of Extracellular Polymeric Substances (EPS) by activated sludge using weighted nonlinear least-squares analysis', Environmental Science and Technology, 43, pp. 3743 - 3750, http://dx.doi.org/10.1021/es9001289

Ni BJ; Fang F; Rittmann BE; Yu HQ, 2009, 'Modeling microbial products in activated sludge under feast#famine conditions', Environmental Science and Technology, 43, pp. 2489 - 2497, http://dx.doi.org/10.1021/es8026693

Ren TT; Mu Y; Ni BJ; Yu HQ, 2009, 'Hydrodynamics of upflow anaerobic sludge blanket reactors', AIChE Journal, 55, pp. 516 - 528, http://dx.doi.org/10.1002/aic.11667

Ni BJ; Fang F; Xie WM; Sun M; Sheng GP; Li WH; Yu HQ, 2009, 'Characterization of extracellular polymeric substances produced by mixed microorganisms in activated sludge with gel-permeating chromatography, excitation-emission matrix fluorescence spectroscopy measurement and kinetic modeling', Water Research, 43, pp. 1350 - 1358, http://dx.doi.org/10.1016/j.watres.2008.12.004

Liu XW; Yu HQ; Ni BJ; Sheng GP, 2009, 'Characterization, modeling and application of aerobic granular sludge for wastewater treatment.', Advances in biochemical engineering/biotechnology, 113, pp. 275 - 303, http://dx.doi.org/10.1007/10_2008_29

Fang F; Ni BJ; Yu HQ, 2009, 'Estimating the kinetic parameters of activated sludge storage using weighted non-linear least-squares and accelerating genetic algorithm', Water Research, 43, pp. 2595 - 2604, http://dx.doi.org/10.1016/j.watres.2009.01.002

Ni BJ; Xie WM; Liu SG; Yu HQ; Wang YZ; Wang G; Dai XL, 2009, 'Granulation of activated sludge in a pilot-scale sequencing batch reactor for the treatment of low-strength municipal wastewater', Water Research, 43, pp. 751 - 761, http://dx.doi.org/10.1016/j.watres.2008.11.009

Zhao BH; Yue ZB; Ni BJ; Mu Y; Yu HQ; Harada H, 2009, 'Modeling anaerobic digestion of aquatic plants by rumen cultures: Cattail as an example', Water Research, 43, pp. 2047 - 2055, http://dx.doi.org/10.1016/j.watres.2009.02.006

LIU S-G; NI B-J; WEl L; TANG Y; YU H-Q, 2009, 'Contact-Adsorption-Regeneration-Stabilization Process for the Treatment of Municipal Wastewater', Journal of Water and Environment Technology, 7, pp. 83 - 90, http://dx.doi.org/10.2965/jwet.2009.83

Ni BJ; Yu HQ, 2008, 'Growth and storage processes in aerobic granules grown on soybean wastewater', Biotechnology and Bioengineering, 100, pp. 664 - 672, http://dx.doi.org/10.1002/bit.21812

Ni BJ; Yu HQ, 2008, 'Simulation of heterotrophic storage and growth processes in activated sludge under aerobic conditions', Chemical Engineering Journal, 140, pp. 101 - 109, http://dx.doi.org/10.1016/j.cej.2007.09.017

Liu SY; Chen YP; Fang F; Li SH; Ni BJ; Liu G; Tian YC; Xiong Y; Yu HQ, 2008, 'Innovative solid-state microelectrode for nitrite determination in a nitrifying granule', Environmental Science and Technology, 42, pp. 4467 - 4471, http://dx.doi.org/10.1021/es800409s

Ni BJ; Yu HQ, 2008, 'Kinetic modeling microbial storage process in activated sludge under anoxic conditions', Chemical Engineering Science, 63, pp. 2785 - 2792, http://dx.doi.org/10.1016/j.ces.2008.02.031

Ni BJ; Yu HQ, 2008, 'An approach for modeling two-step denitrification in activated sludge systems', Chemical Engineering Science, 63, pp. 1449 - 1459, http://dx.doi.org/10.1016/j.ces.2007.12.003

Ni BJ; Yu HQ, 2008, 'Storage and growth of denitrifiers in aerobic granules: Part I. Model development', Biotechnology and Bioengineering, 99, pp. 314 - 323, http://dx.doi.org/10.1002/bit.21555

Ni BJ; Yu HQ; Xie WM, 2008, 'Storage and growth of denitrifiers in aerobic granules: Part II. Model calibration and verification', Biotechnology and Bioengineering, 99, pp. 324 - 332, http://dx.doi.org/10.1002/bit.21554

Ni BJ; Fang F; Xie WM; Yu HQ, 2008, 'Growth, maintenance and product formation of autotrophs in activated sludge: Taking the nitrite-oxidizing bacteria as an example', Water Research, 42, pp. 4261 - 4270, http://dx.doi.org/10.1016/j.watres.2008.06.024

Ni BJ; Yu HQ; Sun YJ, 2008, 'Modeling simultaneous autotrophic and heterotrophic growth in aerobic granules', Water Research, 42, pp. 1583 - 1594, http://dx.doi.org/10.1016/j.watres.2007.11.010

Ni B-J; Yu H-Q, 2008, 'Characterization of the granules in an ANAMMOX reactor after accelerated startup', Journal of Biotechnology, 136, pp. S651 - S651, http://dx.doi.org/10.1016/j.jbiotec.2008.07.1508

Ni BJ; Yu HQ, 2007, 'Model-based analysis on growth of activated sludge in a sequencing batch reactor', Applied Microbiology and Biotechnology, 77, pp. 723 - 731, http://dx.doi.org/10.1007/s00253-007-1185-4

Ni BJ; Yu HQ, 2007, 'A new kinetic approach to microbial storage process', Applied Microbiology and Biotechnology, 76, pp. 1431 - 1438, http://dx.doi.org/10.1007/s00253-007-1104-8

Xu R-Z; Cao J-S; Luo J-Y; Feng Q; Ni B-J; Fang F, 'Integrating Mechanistic and Deep Learning Models for Accurately Predicting the Enrichment of Polyhydroxyalkanoates Accumulating Bacteria in Mixed Microbial Cultures', SSRN Electronic Journal, http://dx.doi.org/10.2139/ssrn.3934298

Huo P; Chen X; Yang L; Wei W; Ni B-J, 'Modeling of Sulfur-Driven Autotrophic Denitrification Coupled with Anammox Process', SSRN Electronic Journal, http://dx.doi.org/10.2139/ssrn.4010689


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