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2024, 'Novel applications of Convolutional Neural Networks in the age of Transformers', Scientific Reports, 14, http://dx.doi.org/10.1038/s41598-024-60709-z
,2024, 'Never underestimate RNA: how a molecule went from bit player to star of the show', Nature, 632, pp. 250 - 251, http://dx.doi.org/10.1038/d41586-024-02537-9
,2024, 'The Evolution of Ultraconserved Elements in Vertebrates.', Mol Biol Evol, 41, http://dx.doi.org/10.1093/molbev/msae146
,2024, 'The Evolution of Ultraconserved Elements in Vertebrates', Molecular Biology and Evolution, 41, pp. msae146, http://dx.doi.org/10.1093/molbev/msae146
,2024, 'Natural antisense transcripts as versatile regulators of gene expression', Nature Reviews Genetics, http://dx.doi.org/10.1038/s41576-024-00723-z
,2023, 'A Kuhnian revolution in molecular biology: Most genes in complex organisms express regulatory RNAs', BioEssays, 45, http://dx.doi.org/10.1002/bies.202300080
,2023, 'Enhancers are genes that express organizational RNAs', Frontiers in RNA Research, 1, http://dx.doi.org/10.3389/frnar.2023.1194526
,2023, 'Long non-coding RNAs: definitions, functions, challenges and recommendations', Nature Reviews Molecular Cell Biology, 24, pp. 430 - 447, http://dx.doi.org/10.1038/s41580-022-00566-8
,2023, 'RNA Regulatory Networks 2.0', International Journal of Molecular Sciences, 24, http://dx.doi.org/10.3390/ijms24109001
,2023, 'RNA out of the mist', Trends in Genetics, 39, pp. 187 - 207, http://dx.doi.org/10.1016/j.tig.2022.11.001
,2023, 'Nano3P-seq: transcriptome-wide analysis of gene expression and tail dynamics using end-capture nanopore cDNA sequencing', Nature Methods, 20, pp. 75 - 85, http://dx.doi.org/10.1038/s41592-022-01714-w
,2022, 'Exploring the epitranscriptome by native RNA sequencing', RNA, 28, pp. 1430 - 1439, http://dx.doi.org/10.1261/rna.079404.122
,2022, 'RNA, the Epicenter of Genetic Information', , http://dx.doi.org/10.1201/9781003109242
,2022, 'The retroelement Lx9 puts a brake on the immune response to virus infection', Nature, 608, pp. 757 - 765, http://dx.doi.org/10.1038/s41586-022-05054-9
,2022, 'Accumulation of endosymbiont genomes in an insect autosome followed by endosymbiont replacement.', Curr Biol, 32, pp. 2786 - 2795.e5, http://dx.doi.org/10.1016/j.cub.2022.05.024
,2022, 'The potential of long noncoding RNA therapies', Trends in Pharmacological Sciences, 43, pp. 269 - 280, http://dx.doi.org/10.1016/j.tips.2022.01.008
,2022, 'ADRAM is an experience-dependent long noncoding RNA that drives fear extinction through a direct interaction with the chaperone protein 14-3-3', Cell Reports, 38, http://dx.doi.org/10.1016/j.celrep.2022.110546
,2021, 'High frequency of intron retention and clustered H3K4me3-marked nucleosomes in short first introns of human long non-coding RNAs', Epigenetics and Chromatin, 14, http://dx.doi.org/10.1186/s13072-021-00419-2
,2021, 'Quantitative profiling of pseudouridylation dynamics in native RNAs with nanopore sequencing', Nature Biotechnology, 39, pp. 1278 - 1291, http://dx.doi.org/10.1038/s41587-021-00915-6
,2021, 'Widespread formation of double-stranded RNAs in testis', Genome Research, 31, pp. 1174 - 1186, http://dx.doi.org/10.1101/gr.265603.120
,2021, 'FADU: a Quantification Tool for Prokaryotic Transcriptomic Analyses.', mSystems, 6, http://dx.doi.org/10.1128/mSystems.00917-20
,2021, 'Subcellular relocalization and nuclear redistribution of the RNA methyltransferases TRMT1 and TRMT1L upon neuronal activation', RNA Biology, 18, pp. 1905 - 1919, http://dx.doi.org/10.1080/15476286.2021.1881291
,2021, 'X-treme loss of sequence diversity linked to neo-X chromosomes in filarial nematodes.', PLoS Negl Trop Dis, 15, pp. e0009838, http://dx.doi.org/10.1371/journal.pntd.0009838
,2020, 'Complete Genome Sequence of wBp, the Wolbachia Endosymbiont of Brugia pahangi FR3.', Microbiol Resour Announc, 9, http://dx.doi.org/10.1128/MRA.00480-20
,2020, 'Nearly Complete Genome Sequence of Brugia pahangi FR3.', Microbiol Resour Announc, 9, http://dx.doi.org/10.1128/MRA.00479-20
,2020, 'Impacts of genomics on the health and social costs of intellectual disability', Journal of Medical Genetics, 57, pp. 479 - 486, http://dx.doi.org/10.1136/jmedgenet-2019-106445
,2020, 'Nearly Complete Genome Sequence of Brugia malayi Strain FR3.', Microbiol Resour Announc, 9, http://dx.doi.org/10.1128/MRA.00154-20
,2020, 'Structural venomics reveals evolution of a complex venom by duplication and diversification of an ancient peptide-encoding gene', Proceedings of the National Academy of Sciences of the United States of America, 117, http://dx.doi.org/10.1073/pnas.1914536117
,2020, 'Integrative analyses of the RNA modification machinery reveal tissue- And cancer-specific signatures', Genome Biology, 21, pp. 97, http://dx.doi.org/10.1186/s13059-020-02009-z
,2020, 'Sex chromosome evolution in parasitic nematodes of humans.', Nat Commun, 11, pp. 1964, http://dx.doi.org/10.1038/s41467-020-15654-6
,2019, 'Accurate detection of m6A RNA modifications in native RNA sequences', Nature Communications, 10, pp. 4079, http://dx.doi.org/10.1038/s41467-019-11713-9
,2019, 'Genetic Variations of Ultraconserved Elements in the Human Genome', OMICS A Journal of Integrative Biology, 23, pp. 549 - 559, http://dx.doi.org/10.1089/omi.2019.0156
,2019, 'CNS cell type-specific gene profiling of P301S tau transgenic mice identifies genes dysregulated by progressive tau accumulation', Journal of Biological Chemistry, 294, pp. 14149 - 14162, http://dx.doi.org/10.1074/jbc.RA118.005263
,2019, 'Accurate detection of m6A RNA modifications in native RNA sequences', Nature Communications, 10, http://dx.doi.org/10.1101/525741
,2019, 'Targeted, high-resolution RNA sequencing of non-coding genomic regions associated with neuropsychiatric functions', Frontiers in Genetics, 10, pp. 309, http://dx.doi.org/10.3389/fgene.2019.00309
,2018, 'Enhancers active in dopamine neurons are a primary link between genetic variation and neuropsychiatric disease', Nature Neuroscience, 21, pp. 1482 - 1492, http://dx.doi.org/10.1038/s41593-018-0223-0
,2018, 'The state of long non-coding RNA biology', Non-coding RNA, 4, pp. 17, http://dx.doi.org/10.3390/ncrna4030017
,2018, 'Adar3 is involved in learning and memory in mice', Frontiers in Neuroscience, 12, pp. 243, http://dx.doi.org/10.3389/fnins.2018.00243
,2018, 'Universal Alternative Splicing of Noncoding Exons', Cell Systems, 6, pp. 245 - 255.e5, http://dx.doi.org/10.1016/j.cels.2017.12.005
,2018, 'Four ways precision medicine is making a difference', The Conversation
,2018, 'Transcription initiation RNAs are associated with chromatin activation mark H3K4me3', BIORXIV, http://dx.doi.org/10.1101/265827
,2018, 'Whole genome sequencing provides better diagnostic yield and future value than whole exome sequencing', Medical Journal of Australia, 209, pp. 197, http://dx.doi.org/10.5694/mja17.01176
,2017, 'DotAligner: Identification and clustering of RNA structure motifs', Genome Biology, 18, http://dx.doi.org/10.1186/s13059-017-1371-3
,2017, 'Intergenic disease-associated regions are abundant in novel transcripts', Genome Biology, 18, pp. 241, http://dx.doi.org/10.1186/s13059-017-1363-3
,2017, 'Prioritising the application of genomic medicine', npj Genomic Medicine, 2, http://dx.doi.org/10.1038/s41525-017-0037-0
,2017, 'The RNA modification landscape in human disease', RNA, 23, pp. 1754 - 1769, http://dx.doi.org/10.1261/rna.063503.117
,2017, 'The Dimensions, Dynamics, and Relevance of the Mammalian Noncoding Transcriptome', Trends in Genetics, 33, pp. 464 - 478, http://dx.doi.org/10.1016/j.tig.2017.04.004
,2017, 'Charting the unknown epitranscriptome', Nature Reviews Molecular Cell Biology, 18, pp. 339 - 340, http://dx.doi.org/10.1038/nrm.2017.49
,2017, 'Differential intron retention in Jumonji chromatin modifier genes is implicated in reptile temperature-dependent sex determination', Science Advances, 3, pp. e1700731, http://dx.doi.org/10.1126/sciadv.1700731
,2017, 'Initiating an undiagnosed diseases program in the Western Australian public health system', Orphanet Journal of Rare Diseases, 12, pp. 83, http://dx.doi.org/10.1186/s13023-017-0619-z
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