By Professor Ruiting Lan

Journal articles

Niu L; Lu S; Hu S; Jin D; Lai X; Yang J; Chen C; Wang Y; Bai X; Lan R; Lv G; Xie Y; Ye C; Xu J, 2016, 'Streptococcus halotolerans sp. nov. isolated from the respiratory tract of Marmota himalayana in Qinghai-Tibet plateau of China', International Journal of Systematic and Evolutionary Microbiology, 66, pp. 4211 - 4217, http://dx.doi.org/10.1099/ijsem.0.001337

Phillips A; Sotomayor C; Wang Q; Holmes N; Furlong C; Ward K; Howard P; Octavia S; Lan R; Sintchenko V, 2016, 'Whole genome sequencing of Salmonella Typhimurium illuminates distinct outbreaks caused by an endemic multi-locus variable number tandem repeat analysis type in Australia, 2014', BMC Microbiology, 16, pp. 211, http://dx.doi.org/10.1186/s12866-016-0831-3

Liu F; Lee H; Lan R; Zhang L, 2016, 'Zonula occludens toxins and their prophages in Campylobacter species', Gut Pathogens, 8, pp. 43, http://dx.doi.org/10.1186/s13099-016-0125-1

Li H; Lan R; Peng N; Sun J; Zhu Y, 2016, 'High resolution melting curve analysis with MATLAB-based program', Measurement: Journal of the International Measurement Confederation, 90, pp. 178 - 186, http://dx.doi.org/10.1016/j.measurement.2016.04.057

Safarchi A; Octavia S; Luu LDW; Tay CY; Sintchenko V; Wood N; Marshall H; McIntyre P; Lan R, 2016, 'Better colonisation of newly emerged Bordetella pertussis in the co-infection mouse model study', Vaccine, 34, pp. 3967 - 3971, http://dx.doi.org/10.1016/j.vaccine.2016.06.052

Luo Y; Octavia S; Jin D; Ye J; Miao Z; Jiang T; Xia S; Lan R, 2016, 'US Gulf-like toxigenic O1 Vibrio cholerae causing sporadic cholera outbreaks in China', Journal of Infection, 72, pp. 564 - 572, http://dx.doi.org/10.1016/j.jinf.2016.02.005

Safarchi A; Octavia S; Wu SZ; Kaur S; Sintchenko V; Gilbert GL; Wood N; McIntyre P; Marshall H; Keil AD; Lan R, 2016, 'Genomic dissection of Australian Bordetella pertussis isolates from the 2008-2012 epidemic', Journal of Infection, 72, pp. 468 - 477, http://dx.doi.org/10.1016/j.jinf.2016.01.005

Qin T; Zhang W; Liu W; Zhou H; Ren H; Shao Z; Lan R; Xu J, 2016, 'Population structure and minimum core genome typing of Legionella pneumophila', Scientific Reports, 6, http://dx.doi.org/10.1038/srep21356

Chen D; Gong L; Walsh TR; Lan R; Wang T; Zhang J; Mai W; Ni N; Lu J; Xu J; Li J, 2016, 'Infection by and dissemination of NDM-5-producing Escherichia coli in China', Journal of Antimicrobial Chemotherapy, 71, pp. 563 - 565, http://dx.doi.org/10.1093/jac/dkv352

Clarke M; McIntyre PB; Blyth CC; Wood N; Octavia S; Sintchenko V; Giles L; Quinn H; Hill V; Hanly G; Lan R; Marshall HS, 2016, 'The relationship between Bordetella pertussis genotype and clinical severity in Australian children with pertussis', Journal of Infection, 72, pp. 171 - 178, http://dx.doi.org/10.1016/j.jinf.2015.11.004

Fu S; Octavia S; Wang Q; Tanaka MM; Tay CY; Sintchenko V; Lan R, 2016, 'Evolution of variable number tandem repeats and its relationship with genomic diversity in Salmonella typhimurium', Frontiers in Microbiology, 7, pp. 2002, http://dx.doi.org/10.3389/fmicb.2016.02002

Qiu X; Bai X; Lan R; Zheng H; Xu J, 2016, 'Novel capsular polysaccharide loci and new diagnostic tools for high-throughput capsular gene typing in Streptococcus suis', Applied and Environmental Microbiology, 82, pp. 7102 - 7112, http://dx.doi.org/10.1128/AEM.02102-16

Bai L; Lan R; Zhang X; Cui S; Xu J; Guo Y; Li F; Zhang D, 2015, 'Prevalence of salmonella isolates from chicken and pig slaughterhouses and emergence of ciprofloxacin and cefotaxime co-resistant S. enterica serovar Indiana in Henan, China', PLoS ONE, 10, http://dx.doi.org/10.1371/journal.pone.0144532

Safarchi A; Octavia S; Luu LDW; Tay CY; Sintchenko V; Wood N; Marshall H; McIntyre P; Lan R, 2015, 'Pertactin negative Bordetella pertussis demonstrates higher fitness under vaccine selection pressure in a mixed infection model', Vaccine, 33, pp. 6277 - 6281, http://dx.doi.org/10.1016/j.vaccine.2015.09.064

Octavia S; Wang Q; Tanaka MM; Sintchenko V; Lan R, 2015, 'Genomic variability of serial human isolates of salmonella enterica serovar typhimurium associated with prolonged carriage', Journal of Clinical Microbiology, 53, pp. 3507 - 3514, http://dx.doi.org/10.1128/JCM.01733-15

Fu S; Octavia S; Tanaka MM; Sintchenko V; Lan R, 2015, 'Defining the core genome of salmonella enterica serovar typhimurium for genomic surveillance and epidemiological typing', Journal of Clinical Microbiology, 53, pp. 2530 - 2538, http://dx.doi.org/10.1128/JCM.03407-14

Mahendran V; Octavia S; Demirbas OF; Sabrina S; Ma R; Lan R; Riordan SM; Grimm MC; Zhang L, 2015, 'Delineation of genetic relatedness and population structure of oral and enteric Campylobacter concisus strains by analysis of housekeeping genes', Microbiology (United Kingdom), 161, pp. 1600 - 1612, http://dx.doi.org/10.1099/mic.0.000112

Liu S; Jin D; Lan R; Wang Y; Meng Q; Dai H; Lu S; Hu S; Xu J, 2015, 'Escherichia marmotae sp. nov., isolated from faeces of Marmota himalayana', International Journal of Systematic and Evolutionary Microbiology, 65, pp. 2130 - 2134, http://dx.doi.org/10.1099/ijs.0.000228

Wang Y; Wang Y; Lan R; Xu H; Ma A; Li D; Dai H; Yuan X; Xu J; Ye C, 2015, 'Multiple endonuclease restriction real-time loop-mediated isothermal amplification: A novel analytically rapid, sensitive, multiplex loop-mediated isothermal amplification detection technique', Journal of Molecular Diagnostics, 17, pp. 392 - 401, http://dx.doi.org/10.1016/j.jmoldx.2015.03.002

Fu S; Liu Y; Li X; Tu J; Lan R; Tian H, 2015, 'A preliminary stochastic model for managing microorganisms in a recirculating aquaculture system', Annals of Microbiology, 65, pp. 1119 - 1129, http://dx.doi.org/10.1007/s13213-014-0958-0

Octavia S; Sara J; Lan R, 2015, 'Characterization of a large novel phage-like plasmid in Salmonella enterica serovar Typhimurium', FEMS Microbiology Letters, 362, http://dx.doi.org/10.1093/femsle/fnv044

Octavia S; Wang Q; Tanaka MM; Kaur S; Sintchenko V; Lan R, 2015, 'Delineating community outbreaks of Salmonella enterica serovar typhimurium by use of whole-genome sequencing: Insights into genomic variability within an outbreak', Journal of Clinical Microbiology, 53, pp. 1063 - 1071, http://dx.doi.org/10.1128/JCM.03235-14

Bai L; Guo Y; Lan R; Dong Y; Wang W; Hu Y; Gan X; Yan S; Fu P; Pei X; Xu J; Liu X; Li F, 2015, 'Genotypic characterization of Shiga toxin-producing Escherichia coli O157:H7 isolates in food products from china between 2005 and 2010', Food Control, 50, pp. 209 - 214, http://dx.doi.org/10.1016/j.foodcont.2014.08.045

Fung CC; Octavia S; Mooney AM; Lan R, 2015, 'Virulence variations in Shigella and enteroinvasive Escherichia coli using the Caenorhabditis elegans model', FEMS Microbiology Letters, 362, http://dx.doi.org/10.1093/femsle/fnu045

Wang Y; Jiao Y; Lan R; Xu X; Liu G; Wang X; Zhang L; Pang H; Jin D; Dai H; Yuan X; Zhang W; Xu J; Ye C, 2015, 'Characterization of Listeria monocytogenes isolated from human Listeriosis cases in China', Emerging Microbes and Infections, 4, pp. 1 - 3, http://dx.doi.org/10.1038/emi.2015.50

Zheng H; Ji S; Liu Z; Lan R; Huang Y; Bai X; Gottschalk M; Xu J, 2015, 'Eight novel capsular polysaccharide synthesis gene loci identified in nontypeable Streptococcus suis isolates', Applied and Environmental Microbiology, 81, pp. 4111 - 4119, http://dx.doi.org/10.1128/AEM.00315-15

Liu L; Hao S; Lan R; Wang G; Xiao D; Sun H; Xu J, 2015, 'The type VI secretion system modulates flagellar gene expression and secretion in Citrobacter freundii and contributes to adhesion and cytotoxicity to host cells', Infection and Immunity, 83, pp. 2596 - 2604, http://dx.doi.org/10.1128/IAI.03071-14

Chen C; Zhang W; Zheng H; Lan R; Wang H; Du P; Bai X; Ji S; Meng Q; Jin D; Liu K; Jing H; Ye C; Gao GF; Wang L; Gottschalk EM; Xu J, 2014, 'Erratum: Correction for Chen et al., minimum core genome sequence typing of bacterial pathogens: A unified approach for clinical and public health microbiology (J. Clin. Microbiol. (2014) 52:11 (4120) 10.1128/JCM.02282-14)', Journal of Clinical Microbiology, 52, pp. 4120, http://dx.doi.org/10.1128/JCM.02282-14

Zheng H; Ji S; Lan R; Liu Z; Bai X; Zhang W; Gottschalk M; Xu J, 2014, 'Population analysis of Streptococcus suis Isolates from slaughtered swine by use of minimum core genome sequence typing', Journal of Clinical Microbiology, 52, pp. 3568 - 3572, http://dx.doi.org/10.1128/JCM.00536-14

Bart MJ; Harris SR; Advani A; Arakawa Y; Bottero D; Bouchez V; Cassiday PK; Chiang CS; Dalby T; Fry NK; Gaillard ME; van Gent M; Guiso N; Hallander HO; Harvill ET; He Q; van der Heide HGJ; Heuvelman K; Hozbor DF; Kamachi K; Karataev GI; Lan R; Lutyńska A; Maharjan RP; Mertsola J; Miyamura T; Octavia S; Preston A; Quail MA; Sintchenko V; Stefanelli P; Tondella ML; Tsang RSW; Xu Y; Yao SM; Zhang S; Parkhill J; Mooi FR, 2014, 'Global population structure and evolution of Bordetella pertussis and their relationship with vaccination', mBio, 5, http://dx.doi.org/10.1128/mBio.01074-14

Li J; Lan R; Xiong Y; Ye C; Yuan M; Liu X; Chen X; Yu D; Liu B; Lin W; Bai X; Wang Y; Sun Q; Wang Y; Zhao H; Meng Q; Chen Q; Zhao A; Xu J, 2014, 'Sequential isolation in a patient of Raoultella planticola and Escherichia coli bearing a novel IS CR1 element carrying blaNDM-1', PLoS ONE, 9, http://dx.doi.org/10.1371/journal.pone.0089893

Sun Q; Knirel YA; Lan R; Wang J; Senchenkova SN; Shashkov AS; Wang Y; Wang Y; Luo X; Xu J, 2014, 'Dissemination and serotype modification potential of pSFxv-2, an O-antigen PEtN modification plasmid in Shigella flexneri', Glycobiology, 24, pp. 305 - 313, http://dx.doi.org/10.1093/glycob/cwt115

Zheng H; Lan R; Zheng X; Cui Z; Liu Z; Bai X; Ji S; Gottschalk M; Xu J, 2014, 'Comparative genomic hybridization identifies virulence differences in Streptococcus suis', PLoS ONE, 9, http://dx.doi.org/10.1371/journal.pone.0087866

Meng Q; Bai X; Zhao A; Lan R; Du H; Wang T; Shi C; Yuan X; Bai X; Ji S; Jin D; Yu B; Wang Y; Sun H; Liu K; Xu J; Xiong Y, 2014, 'Characterization of Shiga toxin-producing Escherichia coli isolated from healthy pigs in China', BMC Microbiology, 14, http://dx.doi.org/10.1186/1471-2180-14-5

Lee H; Ma R; Grimm MC; Riordan SM; Lan R; Zhong L; Raftery M; Zhang L, 2014, 'Examination of the anaerobic growth of Campylobacter concisus strains', International Journal of Microbiology, 2014, http://dx.doi.org/10.1155/2014/476047

Knirel YA; Wang J; Luo X; Senchenkova SN; Lan R; Shpirt AM; Du P; Shashkov AS; Zhang N; Xu J; Sun Q, 2014, 'Genetic and structural identification of an O-acyltransferase gene (oacC) responsible for the 3/4-O-acetylation on rhamnose III in Shigella flexneri serotype 6', BMC Microbiology, 14, http://dx.doi.org/10.1186/s12866-014-0266-7

Zhang N; Lan R; Sun Q; Wang J; Wang Y; Zhang J; Yu D; Hu W; Hu S; Dai H; Du P; Wang H; Xu J, 2014, 'Genomic portrait of the evolution and epidemic spread of a recently emerged multidrug-resistant shigella flexneri clone in China', Journal of Clinical Microbiology, 52, pp. 1119 - 1126, http://dx.doi.org/10.1128/JCM.02669-13

Wang J; Knirel YA; Lan R; Senchenkova SN; Luo X; Perepelov AV; Wang Y; Shashkov AS; Xu J; Sun Q, 2014, 'Identification of an O-acyltransferase gene (oacB) that mediates 3-and 4-O-acetylation of Rhamnose III in Shigella flexneri O antigens', Journal of Bacteriology, 196, pp. 1525 - 1531, http://dx.doi.org/10.1128/JB.01393-13

Lam C; Octavia S; Sintchenko V; Gilbert GL; Lan R, 2014, 'Investigating genome reduction of Bordetella pertussis using a multiplex PCR-based reverse line blot assay (mPCR/RLB)', BMC Research Notes, 7, http://dx.doi.org/10.1186/1756-0500-7-727

Lam C; Octavia S; Ricafort L; Sintchenko V; Gilbert GL; Wood N; McIntyre P; Marshall H; Guiso N; Keil AD; Lawrence A; Robson J; Hogg G; Lan R, 2014, 'Rapid increase in pertactin-deficient Bordetella pertussis isolates, Australia', Emerging Infectious Diseases, 20, pp. 626 - 633, http://dx.doi.org/10.3201/eid2004.131478

Wang J; Lan R; Knirel YA; Luo X; Senchenkova SN; Shashkov AS; Xu J; Sun Q, 2014, 'Serological identification and prevalence of a novel o-antigen epitope linked to 3-and 4-o-acetylated rhamnose III of lipopolysaccharide in shigella flexneri', Journal of Clinical Microbiology, 52, pp. 2033 - 2038, http://dx.doi.org/10.1128/JCM.00197-14

Sun Q; Knirel YA; Wang J; Luo X; Senchenkova SN; Lan R; Shashkov AS; Xu J, 2014, 'Serotype-converting bacteriophage SfII encodes an acyltransferase protein that mediates 6-O-acetylation of GlcNAc in Shigella flexneri O-antigens, conferring on the host a novel O-antigen epitope', Journal of Bacteriology, 196, pp. 3656 - 3666, http://dx.doi.org/10.1128/JB.02009-14

Dadigamuwage A, 2014, 'Population structure and virulence content of avian pathogenic Escherichia coli isolated from outbreaks in Sri Lanka', Veterinary Microbiology, 168, pp. 403 - 412, http://dx.doi.org/10.1016/j.vetmic.2013.11.028

Pang S; Octavia S; Feng L; Liu B; Reeves PR; Lan R; Wang L, 2013, 'Genomic diversity and adaptation of Salmonella enterica serovar Typhimurium from analysis of six genomes of different phage types', BMC Genomics, 14, http://dx.doi.org/10.1186/1471-2164-14-718

Mahendran V; Tan YS; Riordan SM; Grimm MC; Day AS; Lemberg DA; Octavia S; Lan R; Zhang L, 2013, 'The Prevalence and Polymorphisms of Zonula Occluden Toxin Gene in Multiple Campylobacter concisus Strains Isolated from Saliva of Patients with Inflammatory Bowel Disease and Controls', PLoS ONE, 8, http://dx.doi.org/10.1371/journal.pone.0075525

Liu Z; Zheng H; Gottschalk M; Bai X; Lan R; Ji S; Liu H; Xu J, 2013, 'Development of Multiplex PCR Assays for the Identification of the 33 Serotypes of Streptococcus suis', PLoS ONE, 8, http://dx.doi.org/10.1371/journal.pone.0072070

Chen C; Zhang W; Zheng H; Lan R; Wang H; Du P; Bai X; Ji S; Meng Q; Jin D; Liu K; Jing H; Ye C; Gao GF; Wang L; Gottschalk M; Xu J, 2013, 'Minimum core genome sequence typing of bacterial pathogens: A unified approach for clinical and public health microbiology', Journal of Clinical Microbiology, 51, pp. 2582 - 2591, http://dx.doi.org/10.1128/JCM.00535-13

Sun Q; Lan R; Wang J; Xia S; Wang Y; Wang Y; Jin D; Yu B; Knirel YA; Xu J, 2013, 'Identification and Characterization of a Novel Shigella flexneri Serotype Yv in China', PLoS ONE, 8, http://dx.doi.org/10.1371/journal.pone.0070238

Octavia S; Salim A; Kurniawan J; Lam C; Leung Q; Ahsan S; Reeves PR; Nair GB; Lan R, 2013, 'Population Structure and Evolution of Non-O1/Non-O139 Vibrio cholerae by Multilocus Sequence Typing', PLoS ONE, 8, http://dx.doi.org/10.1371/journal.pone.0065342

Bai X; Zhao A; Lan R; Xin Y; Xie H; Meng Q; Jin D; Yu B; Sun H; Lu S; Xu J; Xiong Y, 2013, 'Shiga Toxin-Producing Escherichia coli in Yaks (Bos grunniens) from the Qinghai-Tibetan Plateau, China', PLoS ONE, 8, http://dx.doi.org/10.1371/journal.pone.0065537

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