ORCID as entered in ROS

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2018, 'Vaccine driven selection and the changing molecular epidemiology of Bordetella pertussis', in Rohani P; Scarpino S (ed.), Pertussis Epidemiology, Immunology, and Evolution, Oxford University Press, USA, pp. 166 - 180
,2015, 'Chapter 65 Shigella and Shigellosis Genetics, Epidemiology and Pathogenesis', in Molecular Medical Microbiology, Elsevier, pp. 1147 - 1168, http://dx.doi.org/10.1016/b978-0-12-397169-2.00065-2
,2014, 'The Family Enterobacteriaceae', in DeLong EF; Lory S; Stackebrandt E; Thompson F (ed.), The Prokaryotes, Springer, pp. 225 - 286
,2014, 'Shigella and Shigellosis: Genetics, Epidemiology and Pathogenesis', in Tang Y-W; Sussman M; Liu D; Poxton I; Schwartzman J (ed.), Molecular Medical Microbiology, Three-Volume Set, Academic Press, pp. 1147 - 1168
,2007, 'Amplified Fragment Length Polymorphism Analysis of Salmonella enterica', in Schatten H; Eisenstark A (ed.), Methods in Molecular Biology, vol. 394: Salmonella: Methods and Protocols, Humana Press, Totawa, Netherlands, pp. 119 - 132
,2006, 'Evolution of Enteric Pathogens', in Seifert HS; DiRita VJ (ed.), Evolution of Microbial Pathogens, ASM Press, Washington, DC, pp. 273
,2025, 'Comparative genomic analysis of Salmonella enterica serovar Typhimurium isolates from the chicken production chain and table egg livestock in New South Wales, Australia', Food Microbiology, 132, http://dx.doi.org/10.1016/j.fm.2025.104855
,2025, 'Eubacterium limosum modulates tumor microenvironments and produces antitumor metabolites active against colorectal cancer.', ISME J, http://dx.doi.org/10.1093/ismejo/wraf130
,2025, 'Alistipes putredinis Ameliorates Metabolic Dysfunction-Associated Steatotic Liver Disease in Rats via Gut Microbiota Remodeling and Inflammatory Suppression', Nutrients, 17, http://dx.doi.org/10.3390/nu17122013
,2025, 'Weissella viridescens Attenuates Hepatic Injury, Oxidative Stress, and Inflammation in a Rat Model of High-Fat Diet-Induced MASLD', Nutrients, 17, http://dx.doi.org/10.3390/nu17091585
,2025, 'Gut commensal Alistipes shahii improves experimental colitis in mice with reduced intestinal epithelial damage and cytokine secretion', Msystems, 10, http://dx.doi.org/10.1128/msystems.01607-24
,2025, 'High Occurrence of ST131 Among Extraintestinal Pathogenic Escherichia coli in Humans and Dogs in Sri Lanka', Zoonoses and Public Health, 72, pp. 200 - 206, http://dx.doi.org/10.1111/zph.13199
,2025, 'Weissella confusa alleviates experimental colitis in mice by regulating inflammatory pathways and gut microbiota', Frontiers in Microbiology, 16, http://dx.doi.org/10.3389/fmicb.2025.1574548
,2024, 'Deciphering Bordetella pertussis epidemiology through culture-independent multiplex amplicon and metagenomic sequencing', Journal of Clinical Microbiology, 62, http://dx.doi.org/10.1128/jcm.01178-24
,2024, 'Genomic evidence of two-staged transmission of the early seventh cholera pandemic', Nature Communications, 15, http://dx.doi.org/10.1038/s41467-024-52800-w
,2024, 'A Multilocus Sequence Typing Scheme for Rapid Identification of Xanthomonas citri Based on Whole-Genome Sequencing Data', Phytopathology, 114, pp. 1480 - 1489, http://dx.doi.org/10.1094/PHYTO-12-23-0490-R
,2024, 'DODGE: automated point source bacterial outbreak detection using cumulative long term genomic surveillance', Bioinformatics, 40, http://dx.doi.org/10.1093/bioinformatics/btae427
,2024, 'Prevotella copri alleviates hyperglycemia and regulates gut microbiota and metabolic profiles in mice', Msystems, 9, http://dx.doi.org/10.1128/msystems.00532-24
,2024, 'Corrigendum to “Horizontal transfer of antibiotic resistance genes within the bacterial communities in aquacultural environment” [Sci. Total Environ. 820 (2022) 153286] (Science of the Total Environment (2022) 820, (S0048969722003771), (10.1016/j.scitotenv.2022.153286))', Science of the Total Environment, 922, http://dx.doi.org/10.1016/j.scitotenv.2024.171434
,2024, 'Emergence of Poultry-Associated Human Salmonella enterica Serovar Abortusovis Infections, New South Wales, Australia', Emerging Infectious Diseases, 30, pp. 691 - 700, http://dx.doi.org/10.3201/eid3004.230958
,2024, 'Uncovering the boundaries of Campylobacter species through large-scale phylogenetic and nucleotide identity analyses', Msystems, 9, http://dx.doi.org/10.1128/msystems.01218-23
,2024, 'Genomic diversity of Salmonella enterica serovar Typhimurium isolated from chicken processing facilities in New South Wales, Australia', Frontiers in Microbiology, 15, http://dx.doi.org/10.3389/fmicb.2024.1440777
,2024, 'SaLTy: a novel Staphylococcus aureus Lineage Typer', Microbial Genomics, 10, http://dx.doi.org/10.1099/mgen.0.001250
,2023, 'Emergence and genomic insights of non-pandemic O1 Vibrio cholerae in Zhejiang, China', Microbiology Spectrum, 11, http://dx.doi.org/10.1128/spectrum.02615-23
,2023, 'Genomic Characteristion of Opportunistic Pathogen Kluyvera Reveals a Novel CTX-M Subgroup', Microorganisms, 11, http://dx.doi.org/10.3390/microorganisms11122836
,2023, 'Emerging Aeromonas enteric infections: their association with inflammatory bowel disease and novel pathogenic mechanisms', Microbiology Spectrum, 11, http://dx.doi.org/10.1128/spectrum.01088-23
,2023, 'Bacteroides vulgatus Ameliorates Lipid Metabolic Disorders and Modulates Gut Microbial Composition in Hyperlipidemic Rats', Microbiology Spectrum, 11, http://dx.doi.org/10.1128/spectrum.02517-22
,2023, 'Genomic Epidemiology and Multilevel Genome Typing of Australian Salmonella enterica Serovar Enteritidis', Microbiology Spectrum, 11, http://dx.doi.org/10.1128/spectrum.03014-22
,2023, 'Genomic epidemiology and multilevel genome typing of Bordetella pertussis', Emerging Microbes and Infections, 12, http://dx.doi.org/10.1080/22221751.2023.2239945
,2023, 'Integrating proteomic data with metabolic modeling provides insight into key pathways of Bordetella pertussis biofilms', Frontiers in Microbiology, 14, http://dx.doi.org/10.3389/fmicb.2023.1169870
,2023, 'Vibrio metschnikovii as an emergent pathogen: analyses of phylogeny and O-antigen and identification of possible virulence characteristics', Emerging Microbes and Infections, 12, http://dx.doi.org/10.1080/22221751.2023.2252522
,2022, 'Bacteroides vulgatus attenuates experimental mice colitis through modulating gut microbiota and immune responses', Frontiers in Immunology, 13, http://dx.doi.org/10.3389/fimmu.2022.1036196
,2022, 'Genomic Epidemiology of Vibrio cholerae O139, Zhejiang Province, China, 1994–2018', Emerging Infectious Diseases, 28, pp. 2253 - 2260, http://dx.doi.org/10.3201/eid2811.212066
,2022, 'Dissecting Listeria monocytogenes Persistent Contamination in a Retail Market Using Whole-Genome Sequencing', Microbiology Spectrum, 10, http://dx.doi.org/10.1128/spectrum.00185-22
,2022, 'Horizontal transfer of antibiotic resistance genes within the bacterial communities in aquacultural environment', Science of the Total Environment, 820, http://dx.doi.org/10.1016/j.scitotenv.2022.153286
,2022, 'Metagenomics combined with comprehensive validation as a public health risk assessment tool for urban and agricultural run-off', Water Research, 209, http://dx.doi.org/10.1016/j.watres.2021.117941
,2022, 'Improved Genomic Identification, Clustering, and Serotyping of Shiga Toxin-Producing Escherichia coli Using Cluster/Serotype-Specific Gene Markers', Frontiers in Cellular and Infection Microbiology, 11, pp. 772574, http://dx.doi.org/10.3389/fcimb.2021.772574
,2022, 'Evolutionary and genomic insights into the long-term colonization of Shigella flexneri in animals', Emerging Microbes and Infections, 11, pp. 2069 - 2079, http://dx.doi.org/10.1080/22221751.2022.2109514
,2022, 'Genomic dissection of the microevolution of Australian epidemic Bordetella pertussis', Emerging Microbes and Infections, 11, pp. 1460 - 1473, http://dx.doi.org/10.1080/22221751.2022.2077129
,2022, 'MGTdb: A web service and database for studying the global and local genomic epidemiology of bacterial pathogens', Database, 2022, http://dx.doi.org/10.1093/database/baac094
,2022, 'Rapid Surface Shaving for Proteomic Identification of Novel Surface Antigens for Vaccine Development', , 2414, pp. 47 - 62, http://dx.doi.org/10.1007/978-1-0716-1900-1_4
,2021, 'Cluster-specific gene markers enhance Shigella and Enteroinvasive Escherichia coli in silico serotyping', Microbial Genomics, 7, pp. 000704, http://dx.doi.org/10.1099/mgen.0.000704
,2021, 'Comparative genomics of Chinese and international isolates of Escherichia albertii: population structure and evolution of virulence and antimicrobial resistance', Microbial Genomics, 7, pp. 000710, http://dx.doi.org/10.1099/mgen.0.000710
,2021, 'Development and comparison of novel multiple cross displacement amplification (MCDA) assays with other nucleic acid amplification methods for SARS-CoV-2 detection', Scientific Reports, 11, pp. 1873, http://dx.doi.org/10.1038/s41598-021-81518-8
,2021, 'Evolutionary genomics of recent clinical Bordetella pertussis isolates from Iran: wide circulation of multiple ptxP3 lineages and report of the first ptxP3 filamentous hemagglutinin-negative B. pertussis', Infection Genetics and Evolution, 93, http://dx.doi.org/10.1016/j.meegid.2021.104970
,2021, 'Antimicrobial Resistance and Molecular Characterization of Citrobacter spp. Causing Extraintestinal Infections', Frontiers in Cellular and Infection Microbiology, 11, http://dx.doi.org/10.3389/fcimb.2021.737636
,2021, 'Population Structure and Multidrug Resistance of Non-O1/Non-O139 Vibrio cholerae in Freshwater Rivers in Zhejiang, China', Microbial Ecology, 82, pp. 319 - 333, http://dx.doi.org/10.1007/s00248-020-01645-z
,2021, 'Multilevel genome typing describes short- And long-term vibrio cholerae molecular epidemiology', Msystems, 6, pp. 10.1128/msystems.00134 - 10.1128/msystems.00121, http://dx.doi.org/10.1128/mSystems.00134-21
,2021, 'Citrobacter freundii Activation of NLRP3 Inflammasome via the Type VI Secretion System', Journal of Infectious Diseases, 223, pp. 2174 - 2185, http://dx.doi.org/10.1093/infdis/jiaa692
,2021, 'Beta- and Novel Delta-Coronaviruses Are Identified from Wild Animals in the Qinghai-Tibetan Plateau, China', Virologica Sinica, 36, pp. 402 - 411, http://dx.doi.org/10.1007/s12250-020-00325-z
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