By Professor Ruiting Lan

Preprints

Liu F; Chen S; Biazik JM; Luk C; Ravipati A; Lan R; Riordan SM; Zhang L, 2025, Genomic analysis identifies Campylobacter concisus genomospecies 2 as a novel species and proposes the name Campylobacter oralis, http://dx.doi.org/10.1101/2025.06.24.661227

Suyama H; Luu LDW; Zhong L; Raftery MJ; Lan R, 2024, Proteomic comparison of epidemic Australian Bordetella pertussis biofilm cells, http://dx.doi.org/10.1101/2024.02.19.581093

Payne M; Xu Z; Hu D; Kaur S; Octavia S; Sintchenko V; Lan R, 2023, Genomic epidemiology and multilevel genome typing of Bordetella pertussis, http://dx.doi.org/10.1101/2023.04.26.538362

Suyama H; Luu LDW; Zhong L; Raftery MJ; Lan R, 2022, Integrating proteomic data with metabolic modelling provides insight into key pathways of Bordetella pertussis biofilms, http://dx.doi.org/10.1101/2022.05.27.493021

Zhang X; Payne M; Nguyen T; Kaur S; Lan R, 2021, Cluster-specific gene markers enhance Shigella and Enteroinvasive Escherichia coli in silico serotyping, http://dx.doi.org/10.1101/2021.01.30.428723

Gong L; Tang N; Chen D; Sun K; Lan R; Zhang W; Zhou H; Yuan M; Chen X; Zhao X; Che J; Bai X; Zhang Y; Xu H; Walsh TR; Lu J; Xu J; Li J; Feng J, 2019, A Nosocomial Respiratory Infection Outbreak of Carbapenem-Non-Susceptible <i>Escherichia coli</i> ST131 with Multiple Transmissible <i>blaKPC-2</i> Carrying Plasmids, http://dx.doi.org/10.2139/ssrn.3346515

Kaur S; Payne M; Partridge SR; Sintchenko V; Lan R, A dissection of the genomic antimicrobial resistance epidemiology of Salmonella Typhimurium, http://dx.doi.org/10.1101/2024.05.12.593721

Lu AC; Wu R; Lan R; Zhang L, An integrated genomic framework for Aeromonas genomic species delineation using average nucleotide identify, core-genome phylogeny and digital DNA-DNA hybridization, http://dx.doi.org/10.64898/2026.02.04.703925

Xu X; Zhang H; Huang Y; Zhang Y; Wang X; Wang D; Pu J; Zhao H; Lu X; Lu S; Xiong Y; Ye C; Dong Y; Lan R; Xu J, Beyond a ribosomal RNA methyltransferase, the wider role of MraW in DNA methylation, motility and colonization in Escherichia coli O157:H7, http://dx.doi.org/10.1101/480244

Cheney L; Payne M; Kaur S; McKew G; Lan R, Characterising Staphylococcus aureus genomic epidemiology with Multilevel Genome Typing, http://dx.doi.org/10.1101/2024.05.09.593273

Luo L; Wang H; Payne M; Liang C; Bai L; Zheng H; Zhang Z; Zhang L; Zhang X; yan G; Zou N; Chen X; Wan Z; Xiong Y; Lan R; Li Q, Comparative genomics of Chinese and international isolates of Escherichia albertii: population structure and evolution of virulence and antimicrobial resistance, http://dx.doi.org/10.1101/2021.02.01.429068

Luu LDW; Payne M; Zhang X; Luo L; Lan R, Development and comparison of a novel multiple cross displacement amplification (MCDA) assay with other nucleic acid amplification methods for SARS-CoV-2 detection, http://dx.doi.org/10.1101/2020.10.03.20206193

Wang D; Li K; Wang L; Teng Z; Luo X; Sun H; Huang Y; Hu S; Xu X; Lan R; He Z; Xu J, Dissecting and tracing the gut microbiota of infants with botulism: A cross sectional and longitudinal study, http://dx.doi.org/10.21203/rs.3.rs-3247733/v1

Payne M; Hu D; Wang Q; Sullivan G; Graham RM; Rathnayake IU; Jennison AV; Sintchenko V; Lan R, DODGE: Automated point source bacterial outbreak detection using cumulative long term genomic surveillance, http://dx.doi.org/10.1101/2024.01.21.24301506

Luo L; Payne M; Kaur S; Hu D; Cheney L; Octavia S; Wang Q; Tanaka MM; Sintchenko V; Lan R, Elucidation of global and local genomic epidemiology of Salmonella enterica serovar Enteritidis through multilevel genome typing, http://dx.doi.org/10.1101/2020.06.30.169953

Xu Z; Hu D; Luu LDW; Octavia S; Keil AD; Sintchenko V; Tanaka MM; Mooi FR; Robson J; Lan R, Genomic dissection of the microevolution of Australian epidemic Bordetella pertussis, http://dx.doi.org/10.1101/2022.01.05.475016

Luo L; Payne M; Wang Q; Kaur S; Rathnayake IU; Graham R; Gall M; Draper J; Martinez E; Octavia S; Tanaka MM; Jennison AV; Sintchenko V; Lan R, Genomic epidemiology and multilevel genome typing of Australian Salmonella enterica serovar Enteritidis, http://dx.doi.org/10.1101/2022.05.18.492204

Kaur S; Payne M; Luo L; Octavia S; Tanaka MM; Sintchenko V; Lan R, MGTdb: A web service and database for studying the global and local genomic epidemiology of bacterial pathogens, http://dx.doi.org/10.1101/2022.06.14.496187

Wu R; Kaur S; Payne M; Zhang L; Lan R, Multilevel HierCC typing scheme for global genomic epidemiology and antimicrobial resistance surveillance of Campylobacter jejuni, http://dx.doi.org/10.64898/2025.12.17.694998

Poudyal P; Sy B; Mediati DG; Payne M; Nandel V; Norris D; McAteer S; Ullah A; Li S; Menz L; Waters SA; Dallman TJ; Baker M; Lan R; Gally D; Tree J, Phage-encoded sRNA counteracts xenogenic silencing in pathogenic E. coli, http://dx.doi.org/10.1101/2025.11.27.690950

Cheney L; Payne M; Kaur S; Lan R, SaLTy: a novel Staphylococcus aureus Lineage Typer, http://dx.doi.org/10.1101/2023.02.03.527095

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