By Professor Torsten Thomas

Conference Abstracts

Ozkan J; Willcox M; Sandbach J; Coroneo M; Thomas T, 2020, 'Bacterial contamination of intravitreal needles by the ocular surface microbiome', in Investigative Ophthalmology and Visual Science, Association for Research in Vision and Ophthalmology, Baltimore, USA, presented at Association for Research in Vision and Ophthalmology, Baltimore, USA, https://iovs.arvojournals.org/article.aspx?articleid=2766501

Paida K; Mckay I; Coffey M; Doumit M; Bramley L; Sharp M; Kasparian N; Chuang S; Thomas T; Jaffe A; Katz T; Ooi K, 2020, 'GUT FEELING: PRELIMINARY CROSS-SECTIONAL FINDINGS OF A GUT-BRAIN AXIS IN PAEDIATRIC CYSTIC FIBROSIS PATIENTS', in RESPIROLOGY, WILEY, Vol. 25, pp. 69 - 69, https://www.webofscience.com/api/gateway?GWVersion=2&SrcApp=PARTNER_APP&SrcAuth=LinksAMR&KeyUT=WOS:000538684200131&DestLinkType=FullRecord&DestApp=ALL_WOS&UsrCustomerID=891bb5ab6ba270e68a29b250adbe88d1

Coffey MJ; Low I; Stelzer-Braid S; Wemheuer B; Garg M; Thomas T; Jaffe A; Rawlinson WD; Ooi CY, 2020, 'The intestinal virome in children with cystic fibrosis differs from healthy controls', in Plos One, Vol. 15, http://dx.doi.org/10.1371/journal.pone.0233557

Coffey MJ; Low I; Stelzer-Braid S; Rawlinson W; Thomas T; Jaffe A; Ooi CY, 2019, 'THE INTESTINAL VIROME IN CHILDREN WITH CYSTIC FIBROSIS: A PILOT STUDY', in GASTROENTEROLOGY, W B SAUNDERS CO-ELSEVIER INC, CA, San Diego, Vol. 156, pp. S241 - S241, presented at Digestive Disease Week (DDW), CA, San Diego, 18 May 2019 - 21 May 2019, https://www.webofscience.com/api/gateway?GWVersion=2&SrcApp=PARTNER_APP&SrcAuth=LinksAMR&KeyUT=WOS:000467106000635&DestLinkType=FullRecord&DestApp=ALL_WOS&UsrCustomerID=891bb5ab6ba270e68a29b250adbe88d1

Egan S; Kumar V; Zozaya-Valdes ; Gardiner ME; Hudson J; Deshpande N; Campbell A; Thomas T, 2017, 'BREAKING BAD: OPPORTUNISTIC BACTERIAL PATHOGENS OF SEAWEEDS', in PHYCOLOGIA, INT PHYCOLOGICAL SOC, Vol. 56, pp. 48 - 48, https://www.webofscience.com/api/gateway?GWVersion=2&SrcApp=PARTNER_APP&SrcAuth=LinksAMR&KeyUT=WOS:000412892000098&DestLinkType=FullRecord&DestApp=ALL_WOS&UsrCustomerID=891bb5ab6ba270e68a29b250adbe88d1

Theses / Dissertations

Thomas T, 2000, Low-temperature adaptation of elongation factor 2 proteins from Archaea, University of New South Wales

Working Papers

Yadav S; Dudchenko O; Esvaran M; Rosen B; Field M; Skvortsova K; Gopalakrishnan S; Keilwagen J; Cochran B; Manandhar B; Bucknall M; Bustamante S; Rasmussen J; Melvin R; Omer A; Colaric Z; Chan E; Minoche A; Smith T; Gilbert T; Bogdanovic O; Zammit R; Thomas T; Aiden E; Ballard B; Edwards R, 2020, Desert Dingo (Canis lupus dingo) genome provides insights into their role in the Australian ecosystem, Cold Spring Harbor, http://dx.doi.org10.1101/2020.11.15.384057, https://www.biorxiv.org/content/10.1101/2020.11.15.384057v1

Preprints

Araujo G; Thomas T; Webster NS; Montoya JM; Lurgi M, 2026, An eco-evolutionary theory of host-associated microbiomes, http://dx.doi.org/10.64898/2026.02.10.705025

Araujo G; Thomas T; Montoya JM; Webster NS; Lurgi M, 2025, Towards key principles of host-associated microbiome assembly, http://dx.doi.org/10.1101/2025.10.23.684190

Modolon F; Garritano AN; Hill LJ; Duarte G; Bendia AG; Moura RB; Pellizari VH; Thomas T; Peixoto R, 2025, Promiscuous endosymbionts in deep-sea corals and crinoids are shaped by nitrogen cycling, http://dx.doi.org/10.1101/2025.02.25.640168

Liu R; Wei X; Wang L; Cao J; Song W; Wu J; Thomas T; Jin T; Wang Z; Wei W; Wei Y; Zhai H; Yao C; Shen Z; Fang J, 2021, Novel Chloroflexi Genomes From The Deepest Ocean Reveal Metabolic Strategies For The Adaptation To Deep-Sea Habitats, http://dx.doi.org/10.21203/rs.3.rs-254541/v2

Barno AR; Villela HDM; Cardoso PM; García FC; Cui G; Delgadillo-Ordoñez N; Rosado AS; Thomas T; Aranda M; Voolstra CR; Peixoto RS, Bacterial inoculation elicits changes to the coral epigenome, http://dx.doi.org/10.1101/2024.10.27.620496

Pereyra JPA; D’Agostino PM; Timms VJ; Thomas T; Neilan BA, Comparative genomics of Dolichospermum circinale strains with differential paralytic shellfish toxin profiles, http://dx.doi.org/10.64898/2026.06.11.731795

El-Khaled YC; Garcia FC; Santoro EP; Garcias-Bonet N; Monti M; Teixeira MAL; Justo MSS; Gil-Ramos G; Sempere-Valverde J; Kolbasova G; Beenham L; Duarte G; Martins D; Antony CP; Thomas T; Carvalho S; Peixoto RS, Coral Probiotics Buffer Adjacent Ecosystem-Level Responses to Extreme Marine Heatwave, http://dx.doi.org/10.64898/2026.03.30.715272

Vendl C; Nelson TM; Ferrari B; Thomas T; Rogers T, Highly abundant core taxa in the blow within and across captive bottlenose dolphins provide evidence for a temporally stable airway microbiota, http://dx.doi.org/10.21203/rs.3.rs-17418/v1

Glasl B; Bourne DG; Frade PR; Thomas T; Schaffelke B; Webster NS, Microbial predictors of environmental perturbations in coral reef ecosystems, http://dx.doi.org/10.1101/524173

Shaffer JP; Nothias L-F; Thompson LR; Sanders JG; Salido RA; Couvillion SP; Brejnrod AD; Lejzerowicz F; Haiminen N; Huang S; Lutz HL; Zhu Q; Martino C; Morton JT; Karthikeyan S; Nothias-Esposito M; Dührkop K; Böcker S; Kim HW; Aksenov AA; Bittremieux W; Minich JJ; Marotz C; Bryant MM; Sanders K; Schwartz T; Humphrey G; Vásquez-Baeza Y; Tripathi A; Parida L; Carrieri AP; Beck KL; Das P; González A; McDonald D; Karst SM; Albertsen M; Ackermann G; DeReus J; Thomas T; Petras D; Shade A; Stegen J; Song J; Metz TO; Swafford AD; Dorrestein PC; Jansson JK; Gilbert JA; Knight R; Consortium TEMP, Multi-omics profiling of Earth’s biomes reveals patterns of diversity and co-occurrence in microbial and metabolite composition across environments, http://dx.doi.org/10.1101/2021.06.04.446988

Peixoto R; Ribeiro B; Garritano AN; Raimundo I; Nappi J; Garcias-Bonet N; Villela H; Thomas T; Klautau M; Delgadillo-Ordoñez2 N, Not Only in Corals: Beneficial Microorganisms for Corals can also Be Enriched in Sponges, http://dx.doi.org/10.21203/rs.3.rs-4199775/v1

Liu R; Wei X; Wang L; Cao J; Song W; Wu J; Thomas T; Jin T; Wei W; Wei Y; Zhai H; Yao C; Shen Z; Fang J, Novel Chloroflexi genomes from the deepest ocean reveal metabolic strategies for the adaptation to deep-sea habitats, http://dx.doi.org/10.21203/rs.3.rs-254541/v1

Coffey MJ; van Dorst J; Pushpakumara BLDU; Halim J; Hudson J; Plush L; Christi K; Foster C; Carzino R; Zajakovski N; Appleton L; Cheney J; Wood J; Monaghan SJ; Rawlinson W; Day AS; Oliver M; Ranganathan S; Selvadurai H; Wainwright C; Thomas T; Jaffe A; Ooi CY, Probiotics and the EARly Life effects on intestinal bacteria and inflammation in children with Cystic Fibrosis (The “PEARL-CF” Study), http://dx.doi.org/10.64898/2025.12.04.25341620

Mills JG; Selway CA; Weyrich LS; Skelly C; Weinstein P; Thomas T; Young JM; Marczylo E; Yadav S; Yadav V; Lowe AJ; Breed MF, Rare genera differentiate urban green space soil bacterial communities in three cities across the world, http://dx.doi.org/10.1101/2021.02.21.432167

Mills JG; Selway CA; Thomas T; Weyrich LS; Lowe AJ, School yard biodiversity determines short-term recovery of disturbed skin microbiota in children, http://dx.doi.org/10.1101/2021.06.18.448749

Wemheuer F; Taylor JA; Daniel R; Johnston E; Meinicke P; Thomas T; Wemheuer B, Tax4Fun2: a R-based tool for the rapid prediction of habitat-specific functional profiles and functional redundancy based on 16S rRNA gene marker gene sequences, http://dx.doi.org/10.1101/490037

Mcgeoch MA; Latombe G; Andrew NR; Nakagawa S; Nipperess DA; Roige M; Marzinelli EM; Campbell AH; Vergés A; Thomas T; Steinberg PD; Selwood KE; Hui C, The application of zeta diversity as a continuous measure of compositional change in ecology, http://dx.doi.org/10.1101/216580

Other

TILLETT D; THOMAS T, 2003, A METHOD OF SEQUESTERING AND/OR PURIFYING A POLYPEPTIDE

TILLETT D; THOMAS T, 2003, DNA AMPLIFICATION AND SEQUENCING IN COLLAPSIBLE EMULSIONS

TILLETT D; THOMAS T, 2003, OPTIMISATION OF PRIMER LIBRARIES BY EXTENSION OF SHORT PRIMERS

Tillett D; Thomas T, 2000, A METHOD FOR INCREASING THE AFFINITY OF AN OLIGONUCLEOTIDE FOR A TARGET NUCLEIC ACID, Google Patents

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