By Professor Torsten Thomas

Preprints

Araujo G; Thomas T; Webster NS; Montoya JM; Lurgi M, 2026, An eco-evolutionary theory of host-associated microbiomes, http://dx.doi.org/10.64898/2026.02.10.705025

Araujo G; Thomas T; Montoya JM; Webster NS; Lurgi M, 2025, Towards key principles of host-associated microbiome assembly, http://dx.doi.org/10.1101/2025.10.23.684190

Modolon F; Garritano AN; Hill LJ; Duarte G; Bendia AG; Moura RB; Pellizari VH; Thomas T; Peixoto R, 2025, Promiscuous endosymbionts in deep-sea corals and crinoids are shaped by nitrogen cycling, http://dx.doi.org/10.1101/2025.02.25.640168

Peixoto R; Ribeiro B; Garritano AN; Raimundo I; Nappi J; Garcias-Bonet N; Villela H; Thomas T; Klautau M, 2024, Not Only in Corals: Beneficial Microorganisms for Corals can also Be Enriched in Sponges, http://dx.doi.org/10.21203/rs.3.rs-4199775/v1

Liu R; Wei X; Wang L; Cao J; Song W; Wu J; Thomas T; Jin T; Wang Z; Wei W; Wei Y; Zhai H; Yao C; Shen Z; Fang J, 2021, Novel Chloroflexi Genomes From The Deepest Ocean Reveal Metabolic Strategies For The Adaptation To Deep-Sea Habitats, http://dx.doi.org/10.21203/rs.3.rs-254541/v2

Mills JG; Selway CA; Thomas T; Weyrich LS; Lowe AJ, 2021, School yard biodiversity determines short-term recovery of disturbed skin microbiota in children, http://dx.doi.org/10.1101/2021.06.18.448749

Liu R; Wei X; Wang L; Cao J; Song W; Wu J; Thomas T; Jin T; Wei W; Wei Y; Zhai H; Yao C; Shen Z; Fang J, 2021, Novel Chloroflexi genomes from the deepest ocean reveal metabolic strategies for the adaptation to deep-sea habitats, http://dx.doi.org/10.21203/rs.3.rs-254541/v1

Glasl B; Bourne DG; Frade PR; Thomas T; Schaffelke B; Webster NS, 2019, Microbial predictors of environmental perturbations in coral reef ecosystems, http://dx.doi.org/10.1101/524173

Barno AR; Villela HDM; Cardoso PM; García FC; Cui G; Delgadillo-Ordoñez N; Rosado AS; Thomas T; Aranda M; Voolstra CR; Peixoto RS, Bacterial inoculation elicits changes to the coral epigenome, http://dx.doi.org/10.1101/2024.10.27.620496

Pereyra JPA; D’Agostino PM; Timms VJ; Thomas T; Neilan BA, Comparative genomics of Dolichospermum circinale strains with differential paralytic shellfish toxin profiles, http://dx.doi.org/10.64898/2026.06.11.731795

El-Khaled YC; Garcia FC; Santoro EP; Garcias-Bonet N; Monti M; Teixeira MAL; Justo MSS; Gil-Ramos G; Sempere-Valverde J; Kolbasova G; Beenham L; Duarte G; Martins D; Antony CP; Thomas T; Carvalho S; Peixoto RS, Coral Probiotics Buffer Adjacent Ecosystem-Level Responses to Extreme Marine Heatwave, http://dx.doi.org/10.64898/2026.03.30.715272

Vendl C; Nelson TM; Ferrari B; Thomas T; Rogers T, Highly abundant core taxa in the blow within and across captive bottlenose dolphins provide evidence for a temporally stable airway microbiota, http://dx.doi.org/10.21203/rs.3.rs-17418/v1

Shaffer JP; Nothias L-F; Thompson LR; Sanders JG; Salido RA; Couvillion SP; Brejnrod AD; Lejzerowicz F; Haiminen N; Huang S; Lutz HL; Zhu Q; Martino C; Morton JT; Karthikeyan S; Nothias-Esposito M; Dührkop K; Böcker S; Kim HW; Aksenov AA; Bittremieux W; Minich JJ; Marotz C; Bryant MM; Sanders K; Schwartz T; Humphrey G; Vásquez-Baeza Y; Tripathi A; Parida L; Carrieri AP; Beck KL; Das P; González A; McDonald D; Karst SM; Albertsen M; Ackermann G; DeReus J; Thomas T; Petras D; Shade A; Stegen J; Song J; Metz TO; Swafford AD; Dorrestein PC; Jansson JK; Gilbert JA; Knight R; Consortium TEMP, Multi-omics profiling of Earth’s biomes reveals patterns of diversity and co-occurrence in microbial and metabolite composition across environments, http://dx.doi.org/10.1101/2021.06.04.446988

Coffey MJ; van Dorst J; Pushpakumara BLDU; Halim J; Hudson J; Plush L; Christi K; Foster C; Carzino R; Zajakovski N; Appleton L; Cheney J; Wood J; Monaghan SJ; Rawlinson W; Day AS; Oliver M; Ranganathan S; Selvadurai H; Wainwright C; Thomas T; Jaffe A; Ooi CY, Probiotics and the EARly Life effects on intestinal bacteria and inflammation in children with Cystic Fibrosis (The “PEARL-CF” Study), http://dx.doi.org/10.64898/2025.12.04.25341620

Mills JG; Selway CA; Weyrich LS; Skelly C; Weinstein P; Thomas T; Young JM; Marczylo E; Yadav S; Yadav V; Lowe AJ; Breed MF, Rare genera differentiate urban green space soil bacterial communities in three cities across the world, http://dx.doi.org/10.1101/2021.02.21.432167

Wemheuer F; Taylor JA; Daniel R; Johnston E; Meinicke P; Thomas T; Wemheuer B, Tax4Fun2: a R-based tool for the rapid prediction of habitat-specific functional profiles and functional redundancy based on 16S rRNA gene marker gene sequences, http://dx.doi.org/10.1101/490037

Mcgeoch MA; Latombe G; Andrew NR; Nakagawa S; Nipperess DA; Roige M; Marzinelli EM; Campbell AH; Vergés A; Thomas T; Steinberg PD; Selwood KE; Hui C, The application of zeta diversity as a continuous measure of compositional change in ecology, http://dx.doi.org/10.1101/216580

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