Select Publications
Preprints
2024, Genes in Humans and Mice: Insights from Deep learning of 777K Bulk Transcriptomes, http://dx.doi.org/10.1101/2024.04.01.587517
,2024, Multifaceted Representation of Genes via Deep Learning of Gene Expression Networks, http://dx.doi.org/10.1101/2024.03.07.583777
,2024, Seeing more with less: Extensible Immunofluorescence (ExIF) accessibly generates high-plexity datasets by integrating standard 4-plex imaging data, http://dx.doi.org/10.21203/rs.3.rs-4872456/v1
,2023, A Review on Graph Neural Networks for Predicting Synergistic Drug Combinations, http://dx.doi.org/10.21203/rs.3.rs-3318384/v1
,2023, Cell Type-Specific Regulation by a Heptad of Transcription Factors in Human Hematopoietic Stem and Progenitor Cells, http://dx.doi.org/10.1101/2023.04.18.537282
,2022, A Benchmark of Pre-processing Effect on Single Cell RNA Sequencing Integration Methods, http://dx.doi.org/10.21203/rs.3.rs-2249309/v1
,2022, Extracellular vesicles from biological fluids as potential biomarkers for prostate cancer, http://dx.doi.org/10.21203/rs.3.rs-1948091/v1
,2022, Omics Imagification: Transforming High-throughput Molecular Representation of a Cell into an Image, http://dx.doi.org/10.21203/rs.3.rs-1919175/v1
,2022, Fotomics: Fourier transform-based omics imagification for deep learning-based cell-identity mapping using single-cell omics profiles, http://dx.doi.org/10.1101/2022.07.08.499309
,2022, Pan-cancer Analyses reveal functional similarities of three lncRNAs across multiple tumors, http://dx.doi.org/10.1101/2022.03.14.22272396
,2022, Blood-based transcriptomic signature panel identification for cancer diagnosis: Benchmarking of feature extraction methods, http://dx.doi.org/10.1101/2022.03.13.483368
,2022, Computer-aided diagnosis of reflectance confocal images to differentiate between lentigo maligna (LM) and atypical intraepidermal melanocytic proliferation (AIMP), http://dx.doi.org/10.1101/2022.05.10.491423
,2022, dSeqSb: A systems biology approach to decipher dynamics of host-pathogen interactions using temporal dual RNA-seq data, http://dx.doi.org/10.1101/2022.02.28.482417
,2021, An Integrative Resource for Network-Based Investigation of COVID-19 Combinatorial Drug Repositioning and Mechanism of Action, http://dx.doi.org/10.33774/chemrxiv-2021-tk6rt-v2
,2021, An Integrative Resource for Network-Based Investigation of COVID-19 Combinatorial Drug Repositioning and Mechanism of Action, http://dx.doi.org/10.26434/chemrxiv-2021-tk6rt-v2
,2021, An Update on Novel Approaches for Diagnosis and Treatment of SARS-CoV-2 Infection, http://dx.doi.org/10.31219/osf.io/xg6z5
,2020, An Integrative Resource for Network-Based Investigation of COVID-19 Combinatorial Drug Repositioning and Mechanism of Action, http://dx.doi.org/10.26434/chemrxiv.13271096
,2020, Lipidome profiles of plasma microvesicles differ in experimental cerebral malaria, compared to malaria without neurological complications, http://dx.doi.org/10.1101/2020.07.28.224170
,2020, A Comprehensive Integrated Drug Similarity Resource for In-Silico Drug Repositioning and Beyond, http://dx.doi.org/10.26434/chemrxiv.12376505.v1
,2020, A Comprehensive Integrated Drug Similarity Resource for In-Silico Drug Repositioning and Beyond, http://dx.doi.org/10.26434/chemrxiv.12376505
,2020, Forecasting the Spread of Covid-19 Under Control Scenarios Using LSTM and Dynamic Behavioral Models, http://dx.doi.org/10.48550/arxiv.2005.12270
,2020, Real-time time-series modelling for prediction of COVID-19 spread and intervention assessment, http://dx.doi.org/10.1101/2020.04.24.20078923
,2020, Supervised Application of Internal Validation Measures to Benchmark Dimensionality Reduction Methods in scRNA-seq Data, http://dx.doi.org/10.1101/2020.10.29.361451
,2018, CANCERSIGN: a user-friendly and robust tool for identification and classification of mutational signatures and patterns in cancer genomes, http://dx.doi.org/10.1101/424960
,2018, Deep sequencing of circulating exosomal microRNA allows non-invasive glioblastoma diagnosis, http://dx.doi.org/10.1101/342154
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