By Associate Professor Matthew Baker

Preprints

Matzke NJ; Puente-Lelievre C; Baker MAB, 2025, A Pipeline for Generating Datasets of 3-Dimensional Tertiary Interaction Characters for Model-Based Structural Phylogenetics, http://dx.doi.org/10.31219/osf.io/5uhkx_v1

Feng X; Tachiyama S; He J; Zhu S; Zhao H; Botting JM; Liu Y; Chen Y; Hua C; Lara-Tejero M; Baker MAB; Gao X; Liu J; Gao B, 2025, The architecture, assembly, and evolution of a complex flagellar motor., http://dx.doi.org/10.1101/2025.02.19.638559

Philip JS; Grewal S; Scadden J; Puente-Lelievre C; Matzke NJ; McNally L; Baker MAB, 2024, Mapping the loss of flagellar motility across the tree of life, http://dx.doi.org/10.1101/2024.12.05.626484

Scadden J; Pandit D; Ridone P; Sowa Y; Baker MAB, 2024, Rescue of bacterial motility using two and three-species FliC chimeras, http://dx.doi.org/10.1101/2024.12.02.626473

Gurung JP; Ridone P; Biquet-Bisquert A; Bryant G; Pedaci F; Nord AL; Baker MAB, 2024, Insertion of fluorescent proteins near the plug domain of MotB generates functional stator complex, http://dx.doi.org/10.1101/2024.09.27.615325

Brown H; Islam MI; Ruan J; Baker M; Ithurbide S; Duggin I, 2024, CetZ1-dependent polar assembly of the archaeal motility machinery, http://dx.doi.org/10.1101/2024.05.02.592137

Mason A; Wickham SFJ; Baker MAB, 2024, DIB-BOT: An open-source hardware approach for high throughput droplet interface bilayer deposition, http://dx.doi.org/10.1101/2024.01.26.577347

Ridone P; Baker MAB, 2024, Hybrid Exb/Mot stators require substitutions distant from the chimeric pore to power flagellar rotation, http://dx.doi.org/10.1101/2024.03.12.584617

Puente-Lelievre C; Ridone P; Douglas J; Amritkar K; Kaçar B; Baker M; Matzke N, 2024, Molecular and structural innovations of the stator motor complex at the dawn of flagellar motility, http://dx.doi.org/10.1101/2024.07.22.604496

Gurung J; Kashani M; de Silva C; Baker MAB, 2023, Microbial stir bars: light-activated rotation of tethered bacterial cells to enhance mixing in stagnant fluids, http://dx.doi.org/10.1101/2023.01.26.525760

Puente-Lelievre C; Malik A; Douglas J; Ascher D; Baker M; Allison J; Poole A; Lundin D; Fullmer M; Bouckert R; Kim H; Steinegger M; Matzke N, 2023, Tertiary-interaction characters enable fast, model-based structural phylogenetics beyond the twilight zone, http://dx.doi.org/10.1101/2023.12.12.571181

Hamm J; Liao Y; Kügelgen AV; Dombrowski N; Landers E; Brownlee C; Johansson E; Whan R; Baker M; Baum B; Bharat T; Duggin I; Spang A; Cavicchioli R, 2023, The parasitic lifestyle of an archaeal symbiont, http://dx.doi.org/10.1101/2023.02.24.529834

Ridone P; Winter D; Baker M, 2023, Tuning the stator subunit of the flagellar motor with coiled-coil engineering, http://dx.doi.org/10.1101/2023.03.05.530362

Islam MI; Ridone P; Lin A; Michie K; Matzke N; Hochberg G; Baker MAB, 2022, Ancestral reconstruction of the MotA stator subunit reveals that conserved residues far from the pore are required to drive flagellar motility, http://dx.doi.org/10.1101/2022.10.17.512626

Li J; Jamieson W; Dimitriou P; Xu W; Rohde P; Martinac B; Baker M; Drinkwater B; Castell O; Barrow D, 2022, Building programmable multicompartment artificial cells incorporating remotely activated protein channels using microfluidics and acoustic levitation, http://dx.doi.org/10.1101/2022.01.13.476178

Mandal A; Priyam S; Chan HH; Gouveia BM; Guitera P; Song Y; Baker MAB; Vafaee F, 2022, Computer-aided diagnosis of reflectance confocal images to differentiate between lentigo maligna (LM) and atypical intraepidermal melanocytic proliferation (AIMP), http://dx.doi.org/10.1101/2022.05.10.491423

Matzke N; Lin A; Stone M; Baker M, 2021, Homology between the flagellar export apparatus and ATP synthetase: evidence from synteny predating the Last Universal Common Ancestor, http://dx.doi.org/10.1101/2021.01.01.425057

Islam MI; Bae JH; Ishida T; Ridone P; Lin J; Kelso MJ; Sowa Y; Buckley BJ; Baker MAB, 2021, Novel amiloride derivatives that inhibit bacterial motility across multiple strains and stator types, http://dx.doi.org/10.1101/2021.04.13.439105

Ridone P; Ishida T; Lin A; Humphreys D; Giannoulatou E; Sowa Y; Baker M, 2021, The rapid evolution of flagellar ion-selectivity in experimental populations ofE. coli, http://dx.doi.org/10.1101/2021.01.26.427765

Gurung J; Kashani MN; Agarwal S; Peralta G; Gel M; Baker MAB, 2020, Separation and enrichment of sodium-motile bacteria using cost-effective microfluidics, http://dx.doi.org/10.1101/2020.11.24.395772

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