By Associate Professor Nadeem Omar Kaakoush

Journal articles

Paris VR; Kaakoush NO; Solon-Biet SM; Edwards MC; Ledger WL; Gilchrist RB; Simpson SJ; Handelsman DJ; Walters KA, 2020, 'MON-022 Dissecting the Interplay Between Diet and PCOS Pathology on Gut Microbiota in a PCOS Mouse Model', Journal of the Endocrine Society, 4, http://dx.doi.org/10.1210/jendso/bvaa046.568

Castaño-Rodríguez N; Paramsothy S; Kaakoush NO, 2020, 'Promise of Fecal Microbiota Transplantation Therapy in Pouchitis', Digestive Diseases and Sciences, 65, pp. 1107 - 1110, http://dx.doi.org/10.1007/s10620-019-05831-z

Ghaly S; Kaakoush NO; Hart PH, 2020, 'Effects of UVR exposure on the gut microbiota of mice and humans', Photochemical and Photobiological Sciences, 19, pp. 20 - 28, http://dx.doi.org/10.1039/c9pp00443b

Haifer C; Paramsothy S; Borody TJ; Clancy A; Kingston-Smith H; Leong RW; Kaakoush NO, 2020, 'Mo1929 ORALLY ADMINISTERED LYOPHILIZED FECAL MICROBIOTA TRANSPLANTATION IN CLOSTRIDIOIDES DIFFICILE INFECTION - LONG TERM CLINICAL AND MICROBIOLOGICAL OUTCOMES', Gastroenterology, 158, pp. S - 981, http://dx.doi.org/10.1016/s0016-5085(20)33126-7

Coffey MJ; Nielsen S; Wemheuer B; Kaakoush NO; Garg M; Needham B; Pickford R; Jaffe A; Thomas T; Ooi CY, 2019, 'Gut Microbiota in Children With Cystic Fibrosis: A Taxonomic and Functional Dysbiosis', Scientific Reports, 9, pp. 18593, http://dx.doi.org/10.1038/s41598-019-55028-7

Vinasco K; Mitchell HM; Kaakoush NO; Castaño-Rodríguez N, 2019, 'Microbial carcinogenesis: Lactic acid bacteria in gastric cancer', Biochimica et Biophysica Acta - Reviews on Cancer, 1872, pp. 188309, http://dx.doi.org/10.1016/j.bbcan.2019.07.004

Paramsothy S; Kaakoush NO, 2019, 'Reply', Gastroenterology, 157, pp. 1165 - 1166, http://dx.doi.org/10.1053/j.gastro.2019.08.005

Simovic I; Castaño-Rodríguez N; Kaakoush NO, 2019, 'OPCML: A Promising Biomarker and Therapeutic Avenue', Trends in Cancer, 5, pp. 463 - 466, http://dx.doi.org/10.1016/j.trecan.2019.06.002

Pinget G; Tan J; Janac B; Kaakoush NO; Angelatos AS; O’sullivan J; Koay YC; Sierro F; Davis J; Divakarla SK; Khanal D; Moore RJ; Stanley D; Chrzanowski W; Macia L, 2019, 'Corrigendum: Impact of the food additive titanium dioxide (e171) on gut microbiota-host interaction (Front. Nutr., (2019), 6, 10.3389/fnut.2019.00057)', Frontiers in Nutrition, 6, http://dx.doi.org/10.3389/fnut.2019.00100

Krishnan U; Singh H; Kaakoush N, 2019, 'DOZ047.04: Upper gastrointestinal microbiome in esophageal atresia', Diseases of the Esophagus, 32, http://dx.doi.org/10.1093/dote/doz047.04

Krishnan U; Singh H; Kaakoush N; Leach S, 2019, 'DOZ047.18: Diagnosing reflux aspiration in esophageal atresia: role of microbiome and pepsin', Diseases of the Esophagus, 32, http://dx.doi.org/10.1093/dote/doz047.18

Pinget G; Tan J; Janac B; Kaakoush NO; Angelatos AS; O'Sullivan J; Koay YC; Sierro F; Davis J; Divakarla SK; Khanal D; Moore RJ; Stanley D; Chrzanowski W; Macia L, 2019, 'Impact of the food additive titanium dioxide (e171) on gut microbiota-host interaction', Frontiers in Nutrition, 6, http://dx.doi.org/10.3389/fnut.2019.00057

Ong KL; Hui N; Januszewski AS; Kaakoush NO; Xu A; Fayyad R; DeMicco DA; Jenkins AJ; Keech AC; Waters DD; Barter PJ; Rye KA, 2019, 'High plasma FGF21 levels predicts major cardiovascular events in patients treated with atorvastatin (from the Treating to New Targets [TNT] Study)', Metabolism: Clinical and Experimental, 93, pp. 93 - 99, http://dx.doi.org/10.1016/j.metabol.2018.11.006

Paramsothy S; Nielsen S; Kamm MA; Deshpande NP; Faith JJ; Clemente JC; Paramsothy R; Walsh AJ; van den Bogaerde J; Samuel D; Leong RWL; Connor S; Ng W; Lin E; Borody TJ; Wilkins MR; Colombel JF; Mitchell HM; Kaakoush NO, 2019, 'Specific Bacteria and Metabolites Associated With Response to Fecal Microbiota Transplantation in Patients With Ulcerative Colitis', Gastroenterology, 156, pp. 1440 - 1454.e2, http://dx.doi.org/10.1053/j.gastro.2018.12.001

Mathur A; Feng S; Hayward JA; Ngo C; Fox D; Atmosukarto II; Price JD; Schauer K; Märtlbauer E; Robertson AAB; Burgio G; Fox EM; Leppla SH; Kaakoush NO; Man SM, 2019, 'A multicomponent toxin from Bacillus cereus incites inflammation and shapes host outcome via the NLRP3 inflammasome', Nature Microbiology, 4, pp. 362 - 374, http://dx.doi.org/10.1038/s41564-018-0318-0

Leong RWL; Kaakoush NO; Yau YY; Wasinger VC, 2019, 'Editorial: metabolomic biomarkers for colorectal adenocarcinoma and in the differentiation between irritable bowel syndrome and ulcerative colitis in clinical remission— confounded by the gut microbiome?', Alimentary Pharmacology and Therapeutics, 49, pp. 1086 - 1087, http://dx.doi.org/10.1111/apt.15171

Deshpande NP; Riordan SM; Castaño-Rodríguez N; Wilkins MR; Kaakoush NO, 2018, 'Signatures within the esophageal microbiome are associated with host genetics, age, and disease', Microbiome, 6, pp. 227, http://dx.doi.org/10.1186/s40168-018-0611-4

Castaño-Rodríguez N; Popple GL; Porras-Hurtado GL; Cardona-Deazza JL; Montoya-Martinez JJ; Cadavid-Velez AJ; Toro-Hidalgo HW; Cobo-Alvarado AR; Del Socorro Hincapié-Rincón O; Riordan SM; Kaakoush NO, 2018, 'OPCML is hypermethylated in a subset of patients with metaplastic changes in their esophagus', Biomarker Research, 6, pp. 35, http://dx.doi.org/10.1186/s40364-018-0150-y

Ghaly S; Kaakoush NO; Lloyd F; McGonigle T; Mok D; Baird A; Klopcic B; Gordon L; Gorman S; Forest C; Bouillon R; Lawrance IC; Hart PH, 2018, 'High Dose Vitamin D supplementation alters faecal microbiome and predisposes mice to more severe colitis', Scientific Reports, 8, http://dx.doi.org/10.1038/s41598-018-29759-y

Bhagavata Srinivasan SP; Raipuria M; Bahari H; Kaakoush NO, 2018, 'Impacts of Diet and Exercise on Maternal Gut Microbiota Are Transferred to Offspring', Frontiers in Endocrinology, 9, http://dx.doi.org/10.3389/fendo.2018.00716

Ghaly S; Kaakoush NO; Lloyd F; Gordon L; Forest C; Lawrance IC; Hart PH, 2018, 'Ultraviolet irradiation of skin alters the faecal microbiome independently of vitamin D in mice', Nutrients, 10, http://dx.doi.org/10.3390/nu10081069

Castaño-Rodríguez N; Underwood AP; Merif J; Riordan SM; Rawlinson WD; Mitchell HM; Kaakoush NO, 2018, 'Gut microbiome analysis identifies potential etiological factors in acute gastroenteritis', Infection and Immunity, 86, pp. 10.1128/iai.00060 - 10.1128/iai.00018, http://dx.doi.org/10.1128/IAI.00060-18

Kaakoush NO, 2018, 'Microbiome and esophageal adenocarcinoma—letter', Cancer Research, 78, pp. 1574, http://dx.doi.org/10.1158/0008-5472.CAN-17-3791

Beilharz JE; Kaakoush NO; Maniam J; Morris MJ, 2018, 'Cafeteria diet and probiotic therapy: Cross talk among memory, neuroplasticity, serotonin receptors and gut microbiota in the rat', Molecular Psychiatry, 23, pp. 351 - 361, http://dx.doi.org/10.1038/mp.2017.38

Paramsothy S; Kamm M; Nielsen S; Deshpande N; Faith J; Clemente J; Paramsothy R; Walsh A; van den Bogaerde J; Samuel D; Leong R; Connor S; Ng W; Lin E; Wilkins M; Colombel J-F; Borody T; Mitchell H; Kaakoush N, 2018, 'OP019 In faecal microbiota transplantation (FMT) for ulcerative colitis, fusobacterium is associated with lack of remission, while metabolic shifts to starch degradation and short-chain fatty acid production are associated with remission (FOCUS study)', Journal of Crohn's and Colitis, 12, pp. S013 - S014, http://dx.doi.org/10.1093/ecco-jcc/jjx180.018

Purcell RV; Kaakoush NO; Mitchell HM; Pearson JF; Keenan JI, 2018, 'Gastrointestinal Pathobionts in Pediatric Crohn's Disease Patients', International Journal of Microbiology, 2018, http://dx.doi.org/10.1155/2018/9203908

Paramsothy S; Kamm MA; Nielsen S; Deshpande N; Faith J; Clemente JC; Paramsothy R; Walsh A; van den Bogaerde J; Samuel D; Leong RW; Connor SJ; Ng WSW; Lin E; Wilkins M; Colombel JF; Borody TJ; Mitchell HM; Kaakoush NO, 2018, '130 - In Fecal Microbiota Transplantation (FMT) for Ulcerative Colitis, Fusobacterium is Associated with Lack of Remission, while Metabolic Shifts to Starch Degradation and Short Chain Fatty Acid Production are Associated with Remission – Results from the Randomized Controlled Focus Study', Gastroenterology, 154, pp. S - 35, http://dx.doi.org/10.1016/s0016-5085(18)30588-2

Castaño-Rodríguez N; Goh KL; Fock KM; Mitchell HM; Kaakoush NO, 2017, 'Dysbiosis of the microbiome in gastric carcinogenesis', Scientific Reports, 7, pp. 15957, http://dx.doi.org/10.1038/s41598-017-16289-2

Castaño-Rodríguez N; Mitchell HM; Kaakoush NO, 2017, 'NAFLD, Helicobacter species and the intestinal microbiome', Best Practice and Research: Clinical Gastroenterology, 31, pp. 657 - 668, http://dx.doi.org/10.1016/j.bpg.2017.09.008

Paramsothy S; Paramsothy R; Rubin DT; Kamm MA; Kaakoush NO; Mitchell HM; Castaño-Rodríguez N, 2017, 'Faecal microbiota transplantation for inflammatory bowel disease: A systematic review and meta-analysis', Journal of Crohn's and Colitis, 11, pp. 1180 - 1199, http://dx.doi.org/10.1093/ecco-jcc/jjx063

Kaakoush NO; Morris MJ, 2017, 'More Flavor for Flavonoid-Based Interventions?', Trends in Molecular Medicine, 23, pp. 293 - 295, http://dx.doi.org/10.1016/j.molmed.2017.02.008

Kaakoush NO; Lecomte V; Maloney CA; Morris MJ, 2017, 'Cross-talk among metabolic parameters, esophageal microbiota, and host gene expression following chronic exposure to an obesogenic diet', Scientific Reports, 7, pp. 45753, http://dx.doi.org/10.1038/srep45753

Paramsothy S; Kamm MA; Kaakoush NO; Walsh AJ; van den Bogaerde J; Samuel D; Leong RWL; Connor S; Ng W; Paramsothy R; Xuan W; Lin E; Mitchell HM; Borody TJ, 2017, 'Multidonor intensive faecal microbiota transplantation for active ulcerative colitis: a randomised placebo-controlled trial', The Lancet, 389, pp. 1218 - 1228, http://dx.doi.org/10.1016/S0140-6736(17)30182-4

Castanõ-Rodríguez N; Kaakoush NO; Lee WS; Mitchell HM; Castano Rodriguez N, 2017, 'Dual role of Helicobacter and Campylobacter species in IBD: A systematic review and meta-analysis', Gut, 66, pp. 235 - 249, http://dx.doi.org/10.1136/gutjnl-2015-310545

Paramsothy S; Paramsothy R; Kamm M; Kaakoush N; Mitchell H; Rubin D; Castaño-Rodríguez N, 2017, 'P589 Faecal microbiota transplantation for inflammatory bowel disease: a systematic review and meta-analysis.', J Crohns Colitis, 11, pp. S380 - S381, http://dx.doi.org/10.1093/ecco-jcc/jjx002.713

Kaakoush NO; Martire SI; Raipuria M; Mitchell HM; Nielsen S; Westbrook RF; Morris MJ, 2017, 'Alternating or continuous exposure to cafeteria diet leads to similar shifts in gut microbiota compared to chow diet', Molecular Nutrition and Food Research, 61, http://dx.doi.org/10.1002/mnfr.201500815

Kaakoush NO; Martire SI; Raipuria M; Mitchell HM; Nielsen S; Westbrook RF; Morris MJ, 2017, 'Front cover: Alternating or continuous exposure to cafeteria diet leads to similar shifts in gut microbiota compared to chow diet', Molecular Nutrition & Food Research, 61, http://dx.doi.org/10.1002/mnfr.201770011

Beilharz JE; Kaakoush NO; Maniam J; Morris MJ, 2016, 'The effect of short-term exposure to energy-matched diets enriched in fat or sugar on memory, gut microbiota and markers of brain inflammation and plasticity', Brain, Behavior, and Immunity, 57, pp. 304 - 313, http://dx.doi.org/10.1016/j.bbi.2016.07.151

Kaakoush NO; Morris MJ, 2016, 'The oesophageal microbiome: An unexplored link in obesity-associated oesophageal adenocarcinoma', FEMS Microbiology Ecology, 92, http://dx.doi.org/10.1093/femsec/fiw161

Deshpande NP; Wilkins MR; Castaño-Rodríguez N; Bainbridge E; Sodhi N; Riordan SM; Mitchell HM; Kaakoush NO, 2016, 'Campylobacter concisus pathotypes induce distinct global responses in intestinal epithelial cells', Scientific Reports, 6, pp. 34288, http://dx.doi.org/10.1038/srep34288

Kaakoush NO; Thomas DS; Ruzayqat MM; Lynch D; Leach ST; Lemberg DA; Day AS; Mitchell HM, 2016, 'Campylobacter concisus utilizes blood but not short chain fatty acids despite showing associations with firmicutes taxa', Microbiology (United Kingdom), 162, pp. 1388 - 1397, http://dx.doi.org/10.1099/mic.0.000328

Kaakoush NO; Pickford R; Jaffe A; Ooi CY, 2016, 'Is there a role for stool metabolomics in cystic fibrosis?', Pediatrics International, 58, pp. 808 - 811, http://dx.doi.org/10.1111/ped.13063

Kaakoush NO; Day AS; Leach ST; Lemberg DA; Mitchell HM, 2016, 'Reduction in Gut Microbial Diversity as a Mechanism of Action of Exclusive Enteral Nutrition', American Journal of Gastroenterology, 111, pp. 1033, http://dx.doi.org/10.1038/ajg.2016.61

Underwood AP; Kaakoush NO; Sodhi N; Merif J; Lee WS; Riordan SM; Rawlinson WD; Mitchell HM, 2016, 'Campylobacter concisus pathotypes are present at significant levels in patients with gastroenteritis', Journal of Medical Microbiology, 65, pp. 219 - 226, http://dx.doi.org/10.1099/jmm.0.000216

Nielsen HL; Kaakoush NO; Mitchell HM; Nielsen H, 2016, 'Immunoglobulin G response in patients with Campylobacter concisus diarrhea', Diagnostic Microbiology and Infectious Disease, 84, pp. 151 - 154, http://dx.doi.org/10.1016/j.diagmicrobio.2015.10.026

Klionsky DJ; Abdelmohsen K; Abe A; Abedin MJ; Abeliovich H; Arozena AA; Adachi H; Adams CM; Adams PD; Adeli K; Adhihetty PJ; Adler SG; Agam G; Agarwal R; Aghi MK; Agnello M; Agostinis P; Aguilar PV; Aguirre-Ghiso J; Airoldi EM; Ait-Si-Ali S; Akematsu T; Akporiaye ET; Al-Rubeai M; Albaiceta GM; Albanese C; Albani D; Albert ML; Aldudo J; Algül H; Alirezaei M; Alloza I; Almasan A; Almonte-Beceril M; Alnemri ES; Alonso C; Altan-Bonnet N; Altieri DC; Alvarez S; Alvarez-Erviti L; Alves S; Amadoro G; Amano A; Amantini C; Ambrosio S; Amelio I; Amer AO; Amessou M; Amon A; An Z; Anania FA; Andersen SU; Andley UP; Andreadi CK; Andrieu-Abadie N; Anel A; Ann DK; Anoopkumar-Dukie S; Antonioli M; Aoki H; Apostolova N; Aquila S; Aquilano K; Araki K; Arama E; Aranda A; Araya J; Arcaro A; Arias E; Arimoto H; Ariosa AR; Armstrong JL; Arnould T; Arsov I; Asanuma K; Askanas V; Asselin E; Atarashi R; Atherton SS; Atkin JD; Attardi LD; Auberger P; Auburger G; Aurelian L; Autelli R; Avagliano L; Avantaggiati ML; Avrahami L; Azad N; Awale S; Bachetti T; Backer JM; Bae DH; Bae JS; Bae ON; Bae SH; Baehrecke EH; Baek SH; Baghdiguian S; Bagniewska-Zadworna A, 2016, 'Guidelines for the use and interpretation of assays for monitoring autophagy (3rd edition)', Autophagy, 12, pp. 1 - 222, http://dx.doi.org/10.1080/15548627.2015.1100356

Klionsky DJ; Abdelmohsen K; Abe A; Abedin MJ; Abeliovich H; Arozena AA; Adachi H; Adams CM; Adams PD; Adeli K; Adhihetty PJ; Adler SG; Agam G; Agarwal R; Aghi MK; Agnello M; Agostinis P; Aguilar PV; Aguirre-Ghiso J; Airoldi EM; Ait-Si-Ali S; Akematsu T; Akporiaye ET; Al-Rubeai M; Albaiceta GM; Albanese C; Albani D; Albert ML; Aldudo J; Algül H; Alirezaei M; Alloza I; Almasan A; Almonte-Beceril M; Alnemri ES; Alonso C; Altan-Bonnet N; Altieri DC; Alvarez S; Alvarez-Erviti L; Alves S; Amadoro G; Amano A; Amantini C; Ambrosio S; Amelio I; Amer AO; Amessou M; Amon A; An Z; Anania FA; Andersen SU; Andley UP; Andreadi CK; Andrieu-Abadie N; Anel A; Ann DK; Anoopkumar-Dukie S; Antonioli M; Aoki H; Apostolova N; Aquila S; Aquilano K; Araki K; Arama E; Aranda A; Araya J; Arcaro A; Arias E; Arimoto H; Ariosa AR; Armstrong JL; Arnould T; Arsov I; Asanuma K; Askanas V; Asselin E; Atarashi R; Atherton SS; Atkin JD; Attardi LD; Auberger P; Auburger G; Aurelian L; Autelli R; Avagliano L; Avantaggiati ML; Avrahami L; Azad N; Awale S; Bachetti T; Backer JM; Bae DH; Bae JS; Bae ON; Bae SH; Baehrecke EH; Baek SH; Baghdiguian S; Bagniewska-Zadworna A, 2016, 'Erratum to: Guidelines for the use and interpretation of assays for monitoring autophagy (3rd edition) (Autophagy, 12, 1, 1-222, 10.1080/15548627.2015.1100356', Autophagy, 12, pp. 443, http://dx.doi.org/10.1080/15548627.2016.1147886

Mendz GL; Kaakoush NO; Quinlivan JA, 2016, 'New techniques to characterise the vaginal microbiome in pregnancy', AIMS Microbiology, 2, pp. 55 - 68, http://dx.doi.org/10.3934/MICROBIOL.2016.1.55

Deshpande NP; Wilkins MR; Mitchell HM; Kaakoush NO, 2015, 'Novel genetic markers define a subgroup of pathogenic Escherichia coli strains belonging to the B2 phylogenetic group', FEMS Microbiology Letters, 362, http://dx.doi.org/10.1093/femsle/fnv193

Paramsothy S; Walsh AJ; Borody T; Samuel D; Van Den Bogaerde J; Leong RWL; Connor S; Ng W; Mitchell HM; Kaakoush NO; Kamm MA, 2015, 'Gastroenterologist perceptions of faecal microbiota transplantation', World Journal of Gastroenterology, 21, pp. 10907 - 10914, http://dx.doi.org/10.3748/wjg.v21.i38.10907

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