Select Publications

Journal articles

Luu LDW; Pandey A; Paramsothy S; Ngo C; Castaño-Rodríguez N; Liu C; Kamm MA; Borody TJ; Man SM; Kaakoush NO, 2024, 'Profiling the colonic mucosal response to fecal microbiota transplantation identifies a role for GBP5 in colitis in humans and mice', Nature Communications, 15,

Pandey A; Shen C; Feng S; Tuipulotu DE; Ngo C; Liu C; Kurera M; Mathur A; Venkataraman S; Zhang J; Talaulikar D; Song R; Wong JJL; Teoh N; Kaakoush NO; Man SM, 2024, 'Ku70 senses cytosolic DNA and assembles a tumor-suppressive signalosome', Science Advances, 10,

Benard M; de Goffau M; Blonk J; Hugenholtz F; van Buuren J; Paramsothy S; Kaakoush N; Borody T; Kamm M; Ponsioen C, 2024, 'P1205 Features of the gut microbiota that associate with clinical outcomes of fecal microbiota transplantation in Ulcerative Colitis: a systematic review and meta-analysis', Journal of Crohn's and Colitis, 18, pp. i2145 - i2146,

Wark G; Kaakoush NO; Samocha-Bonet D; Ghaly S; Danta M, 2024, 'P1233 Serum insulin is associated with c-reactive protein and gut microbial diversity in inflammatory bowel disease', Journal of Crohn's and Colitis, 18, pp. i2183 - i2183,

Parthasarathy R; Wakefield D; Santiago FS; Kaakoush NO; Tedla N, 2024, 'Horizontal gene transfer and endogenous retroviruses as mechanisms for molecular mimicry', The Lancet Microbe, 5, pp. e4 - e5,

Shalaby N; Samocha-Bonet D; Kaakoush NO; Danta M, 2023, 'The Role of the Gastrointestinal Microbiome in Liver Disease', Pathogens, 12,

Clifford BK; Kaakoush NO; Tedla N; Goldstein D; Simar D, 2023, 'The effect of exercise intensity on the inflammatory profile of cancer survivors: A randomised crossover study', European Journal of Clinical Investigation, 53, pp. e13984,

Mathur A; Kay C; Xue Y; Pandey A; Lee J; Jing W; Enosi Tuipulotu D; Lo Pilato J; Feng S; Ngo C; Zhao A; Shen C; Rug M; Miosge LA; Atmosukarto II; Price JD; Ali SA; Gardiner EE; Robertson AAB; Awad MM; Lyras D; Kaakoush NO; Man SM, 2023, 'Clostridium perfringens virulence factors are nonredundant activators of the NLRP3 inflammasome', EMBO Reports, 24,

Kendig MD; Leigh SJ; Hasebe K; Kaakoush NO; Westbrook RF; Morris MJ, 2023, 'Obesogenic Diet Cycling Produces Graded Effects on Cognition and Microbiota Composition in Rats', Molecular Nutrition and Food Research, 67,

Enosi Tuipulotu D; Feng S; Pandey A; Zhao A; Ngo C; Mathur A; Lee J; Shen C; Fox D; Xue Y; Kay C; Kirkby M; Lo Pilato J; Kaakoush NO; Webb D; Rug M; Robertson AAB; Tessema MB; Pang S; Degrandi D; Pfeffer K; Augustyniak D; Blumenthal A; Miosge LA; Brüstle A; Yamamoto M; Reading PC; Burgio G; Man SM, 2023, 'Immunity against Moraxella catarrhalis requires guanylate-binding proteins and caspase-11-NLRP3 inflammasomes', EMBO Journal, 42,

Clifford BK; Amorim N; Kaakoush N; Boysen L; Tedla N; Goldstein D; Hardeman E; Simar D, 2023, 'Irradiation-Induced Dysbiosis: The Compounding Effect ofHigh-Fat Diet on Metabolic and Immune Functions in Mice', International Journal of Molecular Sciences, 24, pp. 5631 - 5631,

Parthasarathy R; Santiago F; McCluskey P; Kaakoush NO; Tedla N; Wakefield D, 2023, 'The microbiome in HLA-B27-associated disease: implications for acute anterior uveitis and recommendations for future studies', Trends in Microbiology, 31, pp. 142 - 158,

Chetwood JD; Paramsothy S; Haifer C; Leong RW; Kaakoush NO, 2023, 'Key metabolomic alterations are associated with ulcerative colitis disease state and activity: A validation analysis', Gut,

Haifer C; Luu LDW; Paramsothy S; Borody TJ; Leong RW; Kaakoush NO, 2023, 'Microbial determinants of effective donors in faecal microbiota transplantation for UC', Gut, 72, pp. 90 - 100,

Kendig MD; Hasebe K; Tajaddini A; Kaakoush NO; Westbrook RF; Morris MJ, 2023, 'The Benefits of Switching to a Healthy Diet on Metabolic, Cognitive, and Gut Microbiome Parameters Are Preserved in Adult Rat Offspring of Mothers Fed a High-Fat, High-Sugar Diet', Molecular Nutrition and Food Research, 67,

Podlesny D; Durdevic M; Paramsothy S; Kaakoush NO; Högenauer C; Gorkiewicz G; Walter J; Fricke WF, 2022, 'Identification of clinical and ecological determinants of strain engraftment after fecal microbiota transplantation using metagenomics', Cell Reports Medicine, 3,

Hasebe K; Kendig MD; Kaakoush NO; Tajaddini A; Westbrook RF; Morris MJ, 2022, 'The influence of maternal unhealthy diet on maturation of offspring gut microbiota in rat', Animal Microbiome, 4,

Jing W; Pilato JL; Kay C; Feng S; Tuipulotu DE; Mathur A; Shen C; Ngo C; Zhao A; Miosge LA; Ali SA; Gardiner EE; Awad MM; Lyras D; Robertson AAB; Kaakoush NO; Man SM, 2022, 'Clostridium septicum α-toxin activates the NLRP3 inflammasome by engaging GPI-anchored proteins', Science Immunology, 7,

Kaakoush NO; Olzomer EM; Kosasih M; Martin AR; Fargah F; Lambie N; Susic D; Hoehn KL; Farrell R; Byrne FL, 2022, 'Differences in the Active Endometrial Microbiota across Body Weight and Cancer in Humans and Mice', Cancers, 14, pp. 2141,

Haifer C; Paramsothy S; Kaakoush NO; Leong RW, 2022, 'Oral faecal microbiota transplantation in ulcerative colitis – Authors' reply', The Lancet Gastroenterology and Hepatology, 7, pp. 286 - 287,

Haifer C; Paramsothy S; Kaakoush NO; Saikal A; Ghaly S; Yang T; Luu LDW; Borody TJ; Leong RW, 2022, 'Lyophilised oral faecal microbiota transplantation for ulcerative colitis (LOTUS): a randomised, double-blind, placebo-controlled trial', The Lancet Gastroenterology and Hepatology, 7, pp. 141 - 151,

Lu LDW; Singh H; Castaño-Rodríguez N; Leach ST; Riordan SM; Tedla N; Krishnan U; Kaakoush NO, 2022, 'Changes to the upper gastrointestinal microbiotas of children with reflux oesophagitis and oesophageal metaplasia', Microbial Genomics, 8,

Rodriguez Paris V; Wong XYD; Solon-Biet SM; Edwards MC; Aflatounian A; Gilchrist RB; Simpson SJ; Handelsman DJ; Kaakoush NO; Walters KA, 2022, 'The interplay between PCOS pathology and diet on gut microbiota in a mouse model', Gut Microbes, 14,

Don Wai Luu L; Kaakoush NO; Castaño-Rodríguez N, 2022, 'The role of ATG16L2 in autophagy and disease', Autophagy, 18, pp. 2537 - 2546,

Deshpande NP; Riordan SM; Gorman CJ; Nielsen S; Russell TL; Correa-Ospina C; Fernando BSM; Waters SA; Castaño-Rodríguez N; Man SM; Tedla N; Wilkins MR; Kaakoush NO, 2021, 'Multi-omics of the esophageal microenvironment identifies signatures associated with progression of Barrett’s esophagus', Genome Medicine, 13, pp. 133,

Haifer C; Saikal A; Paramsothy R; Kaakoush NO; Leong RW; Borody TJ; Kamm MA; Paramsothy S, 2021, 'Response to faecal microbiota transplantation in ulcerative colitis is not sustained long term following induction therapy', Gut, 70, pp. 2210 - 2211,

Haifer C; Saikal A; Paramsothy R; Kaakoush NO; Leong RW; Borody TJ; Kamm MA; Paramsothy S, 2021, 'Response to faecal microbiota transplantation in ulcerative colitis is not sustained long term following induction therapy', GUT, 70, pp. 2210 - 2210,

Podlesny D; Durdevic M; Paramsothy S; Kaakoush NO; Högenauer C; Gorkiewicz G; Walter J; Fricke WF, 2021, 'Intraspecies strain exclusion, antibiotic pretreatment, and donor selection control microbiota engraftment after fecal transplantation', ,

An H; Richardson A; Rajasekariah P; Zhong L; Fernando BSM; Macmillan A; Klotzsch E; Bryant K; Kaakoush NO; Tedla N, 2021, 'Nuclear Leukocyte Immunoglobulin-like Receptor A3 Is Monomeric and Is Involved in Multiple Layers of Regulated Gene Expression and Translation', Journal of Proteome Research, 20, pp. 3078 - 3089,

Haifer C; Saikal A; Paramsothy S; Borody TJ; Ghaly S; Kaakoush NO; Leong R, 2021, 'Lyophilised orally administered faecal microbiota transplantation for Active Ulcerative Colitis (LOTUS study)', JOURNAL OF CROHNS & COLITIS, 15, pp. S029 - S029,

Haifer C; Paramsothy S; Borody TJ; Clancy A; Leong RW; Kaakoush NO, 2021, 'Long-term bacterial and fungal dynamics following oral lyophilized fecal microbiota transplantation in clostridioides difficile infection', mSystems, 6,


Capraro A; Wong S; Adhikari A; Allan K; Patel H; Zhong L; Raftery M; Jaffe A; Yeang M; Aggarwal A; Wu L; Pandzic E; Whan R; Turville S; Vittorio O; Bull R; Kaakoush N; Rawlinson W; Tedla N; Vafaee F; Waters S, 2021, 'Ageing impairs the airway epithelium defence response to SARS-CoV-2', ,

Fox D; Mathur A; Xue Y; Liu Y; Tan WH; Feng S; Pandey A; Ngo C; Hayward JA; Atmosukarto II; Price JD; Johnson MD; Jessberger N; Robertson AAB; Burgio G; Tscharke DC; Fox EM; Leyton DL; Kaakoush NO; Märtlbauer E; Leppla SH; Man SM, 2020, 'Bacillus cereus non-haemolytic enterotoxin activates the NLRP3 inflammasome', Nature Communications, 11,

Leigh SJ; Kaakoush NO; Bertoldo MJ; Westbrook RF; Morris MJ, 2020, 'Intermittent cafeteria diet identifies fecal microbiome changes as a predictor of spatial recognition memory impairment in female rats', Translational Psychiatry, 10,

Leigh SJ; Kaakoush NO; Westbrook RF; Morris MJ, 2020, 'Minocycline-induced microbiome alterations predict cafeteria diet-induced spatial recognition memory impairments in rats', Translational Psychiatry, 10,

Krishnan U; Singh H; Tedla N; Leach ST; Kaakoush NO, 2020, 'Presence of gastric pepsinogen in the trachea is associated with altered inflammation and microbial composition', Infection and Immunity, 88,

Wasinger VC; Lu K; Yau YY; Nash J; Lee J; Chang J; Paramsothy S; Kaakoush NO; Mitchell HM; Leong RWL, 2020, 'Spp24 is associated with endocytic signalling, lipid metabolism, and discrimination of tissue integrity for ‘leaky-gut’ in inflammatory bowel disease', Scientific Reports, 10,

Britton GJ; Contijoch EJ; Spindler MP; Aggarwala V; Dogan B; Bongers G; Mateo LS; Baltus A; Das A; Gevers D; Borody TJ; Kaakoush NO; Kamm MA; Mitchell H; Paramsothy S; Clemente JC; Colombel JF; Simpson KW; Dubinsky MC; Grinspan A; Faith JJ, 2020, 'Defined microbiota transplant restores Th17/RORγt+ regulatory T cell balance in mice colonized with inflammatory bowel disease microbiotas', Proceedings of the National Academy of Sciences of the United States of America, 117, pp. 21536 - 21545,

Leigh SJ; Kaakoush NO; Escorihuela RM; Westbrook RF; Morris MJ, 2020, 'Treadmill exercise has minimal impact on obesogenic diet-related gut microbiome changes but alters adipose and hypothalamic gene expression in rats', Nutrition and Metabolism, 17,

Kaakoush NO, 2020, 'Fecal transplants as a microbiome-based therapeutic', Current Opinion in Microbiology, 56, pp. 16 - 23,

Kaakoush NO, 2020, 'Sutterella Species, IgA-degrading Bacteria in Ulcerative Colitis', Trends in Microbiology, 28, pp. 519 - 522,

Leonardi I; Paramsothy S; Doron I; Semon A; Kaakoush NO; Clemente JC; Faith JJ; Borody TJ; Mitchell HM; Colombel JF; Kamm MA; Iliev ID, 2020, 'Fungal Trans-kingdom Dynamics Linked to Responsiveness to Fecal Microbiota Transplantation (FMT) Therapy in Ulcerative Colitis', Cell Host and Microbe, 27, pp. 823 - 829.e3,

Paris VR; Kaakoush NO; Solon-Biet SM; Edwards MC; Ledger WL; Gilchrist RB; Simpson SJ; Handelsman DJ; Walters KA, 2020, 'MON-022 Dissecting the Interplay Between Diet and PCOS Pathology on Gut Microbiota in a PCOS Mouse Model', Journal of the Endocrine Society, 4,

Castaño-Rodríguez N; Paramsothy S; Kaakoush NO, 2020, 'Promise of Fecal Microbiota Transplantation Therapy in Pouchitis', Digestive Diseases and Sciences, 65, pp. 1107 - 1110,

Ghaly S; Kaakoush NO; Hart PH, 2020, 'Effects of UVR exposure on the gut microbiota of mice and humans', Photochemical and Photobiological Sciences, 19, pp. 20 - 28,


Coffey MJ; Nielsen S; Wemheuer B; Kaakoush NO; Garg M; Needham B; Pickford R; Jaffe A; Thomas T; Ooi CY, 2019, 'Gut Microbiota in Children With Cystic Fibrosis: A Taxonomic and Functional Dysbiosis', Scientific Reports, 9, pp. 18593,

Vinasco K; Mitchell HM; Kaakoush NO; Castaño-Rodríguez N, 2019, 'Microbial carcinogenesis: Lactic acid bacteria in gastric cancer', Biochimica et Biophysica Acta - Reviews on Cancer, 1872, pp. 188309,

Paramsothy S; Kaakoush NO, 2019, 'Reply', Gastroenterology, 157, pp. 1165 - 1166,

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