By Dr Jonathan Daly

Book Chapters

Bouwmeester J; Daly J; Zuchowicz N; Hagedorn M, 2022, 'Cryopreservation to Conserve Genetic Diversity of Reef-Building Corals', in Coral Reefs of the World, pp. 225 - 240, http://dx.doi.org/10.1007/978-3-031-07055-6_14

Hagedorn M; Spindler R; Daly J, 2019, 'Cryopreservation as a tool for reef restoration: 2019', in Advances in Experimental Medicine and Biology, pp. 489 - 505, http://dx.doi.org/10.1007/978-3-030-23633-5_16

Daly J; Jones R, 2017, 'The use of reproductive technologies in breeding programs for elasmobranchs in aquaria', in The Elasmobranch Husbandry Manual 2. : Recent Advances in the Care of Sharks, Rays and Their Relatives

Daly J; Tiersch T, 2011, 'Flow Cytometry for the Assessment of Sperm Quality in Aquatic Species', in Cryopreservation in Aquatic Species A Comprehensive Overview of Current Practices, Programmatic Development and Future Directions for Cryopreservation of Gametes Embryos and Larvae of Aquatic Species

Daly J; Holland MK; Galloway DB, 2011, 'Preliminary Investigations on Sperm Cryopreservation of a Stingray, the Sparsely Spotted Stingaree', in Cryopreservation in Aquatic Species A Comprehensive Overview of Current Practices, Programmatic Development and Future Directions for Cryopreservation of Gametes Embryos and Larvae of Aquatic Species

Journal articles

Daly J; Hobbs R; Zuchowicz N; Hagedorn M; O’brien JK, 2024, 'A Semi-Automated Workflow for the Cryopreservation of Coral Sperm to Support Biobanking and Aquaculture', Journal of Visualized Experiments, 2024, http://dx.doi.org/10.3791/66233

Westbrook CE; Daly J; Bowen BW; Hagedorn M, 2024, 'Cryopreservation of the collector urchin embryo, Tripneustes gratilla', Cryobiology, 115, http://dx.doi.org/10.1016/j.cryobiol.2024.104865

Guo Z; Zuchowicz N; Bouwmeester J; Joshi AS; Neisch AL; Smith K; Daly J; Etheridge ML; Finger EB; Kodandaramaiah SB; Hays TS; Hagedorn M; Bischof JC, 2024, 'Conduction-Dominated Cryomesh for Organism Vitrification', Advanced Science, 11, http://dx.doi.org/10.1002/advs.202303317

Daly J; Van Issum H; Cummins M; Evans-Illidge E; Randall CJ; Boyd S; Cveticanin L; Dundas-Hargraves K; Liddell B; Hobbs RJ; O’Brien JK, 2024, 'Cross-cultural approach to biobanking of living coral cells on Woppaburra sea Country in the southern inshore Great Barrier Reef', Australasian Journal of Environmental Management, http://dx.doi.org/10.1080/14486563.2024.2401567

Powell-Palm MJ; Henley EM; Consiglio AN; Lager C; Chang B; Perry R; Fitzgerald K; Daly J; Rubinsky B; Hagedorn M, 2023, 'Cryopreservation and revival of Hawaiian stony corals using isochoric vitrification', Nature Communications, 14, http://dx.doi.org/10.1038/s41467-023-40500-w

Bouwmeester J; Daly J; Zuchowicz N; Lager C; Henley EM; Quinn M; Hagedorn M, 2023, 'Solar radiation, temperature and the reproductive biology of the coral Lobactis scutaria in a changing climate', Scientific Reports, 13, http://dx.doi.org/10.1038/s41598-022-27207-6

Hobbs RJ; Upton R; Calatayud NE; Silla AJ; Daly J; McFadden MS; O’Brien JK, 2023, 'Cryopreservation Cooling Rate Impacts Post-Thaw Sperm Motility and Survival in Litoria booroolongensis', Animals, 13, http://dx.doi.org/10.3390/ani13193014

Daly J; Bouwmeester J; Perry R; Page C; Khosla K; Kangas J; Lager C; Hardy K; Bischof JC; Hagedorn M, 2023, 'The First Proof of Concept Demonstration of Nanowarming in Coral Tissues', Advanced Sustainable Systems, 7, http://dx.doi.org/10.1002/adsu.202300303

Rowlison T; Nagashima J; Acker JP; Ben R; Daly J; Hagedorn M; Comizzoli P, 2023, 'First Report of Successful Laser Warming for Frozen Gonadal Tissues and Oocytes in the Domestic Cat Model', Biopreservation and Biobanking, 21, pp. 433 - 438, http://dx.doi.org/10.1089/bio.2022.0071

Page C; Perry R; Lager CV; Daly J; Bouwmeester J; Michael Henley E; Hagedorn M, 2023, 'Tank fouling community enhances coral microfragment growth', PeerJ, 11, http://dx.doi.org/10.7717/peerj.15723

Henley EM; Quinn M; Bouwmeester J; Daly J; Lager C; Zuchowicz N; Bailey DW; Hagedorn M, 2022, 'Contrasting reproductive strategies of two Hawaiian Montipora corals', Scientific Reports, 12, http://dx.doi.org/10.1038/s41598-022-16032-6

Hobbs RJ; O'Brien JK; Bay LK; Severati A; Spindler R; Henley EM; Quigley KM; Randall CJ; van Oppen MJH; Carter V; Zuchowicz N; Hagedorn M; Daly J, 2022, 'A decade of coral biobanking science in Australia - transitioning into applied reef restoration', Frontiers in Marine Science, 9, http://dx.doi.org/10.3389/fmars.2022.960470

Bouwmeester J; Daly J; Henley EM; Parenti LR; Pitassy DE; Hagedorn M, 2022, 'Conservation of coral reef fishes: a field-hardy method to cryopreserve spermatogonial cells', Coral Reefs, 41, pp. 855 - 861, http://dx.doi.org/10.1007/s00338-022-02268-1

Daly J; Hobbs RJ; Zuchowicz N; O’Brien JK; Bouwmeester J; Bay L; Quigley K; Hagedorn M, 2022, 'Cryopreservation can assist gene flow on the Great Barrier Reef', Coral Reefs, 41, pp. 455 - 462, http://dx.doi.org/10.1007/s00338-021-02202-x

Rivers N; Daly J; Jones R; Currie PD; Temple-Smith P, 2022, 'Cryopreservation and Flow Cytometric Analysis of Ovarian Tissue in Murray River Rainbowfish, Melanotaenia fluviatilis', Animals, 12, http://dx.doi.org/10.3390/ani12060794

Zuchowicz N; Daly J; Bouwmeester J; Lager C; Henley EM; Nuñez Lendo CI; Hagedorn M, 2021, 'Assessing coral sperm motility', Scientific Reports, 11, http://dx.doi.org/10.1038/s41598-020-79732-x

Henley EM; Quinn M; Bouwmeester J; Daly J; Zuchowicz N; Lager C; Bailey DW; Hagedorn M, 2021, 'Reproductive plasticity of Hawaiian Montipora corals following thermal stress', Scientific Reports, 11, http://dx.doi.org/10.1038/s41598-021-91030-8

Zuchowicz N; Daly J; Lager C; Williamson O; Hagedorn M, 2021, 'Freezing on the beach: A robust coral sperm cryopreservation design', Cryobiology, 101, pp. 135 - 139, http://dx.doi.org/10.1016/j.cryobiol.2021.04.005

Bouwmeester J; Daly J; Quinn M; Lager C; Hagedorn M, 2021, 'Cryopreservation of Coral Symbiotic Dinoflagellates (family: Symbiodiniaceae)', Cryobiology, 103, pp. 163 - 164, http://dx.doi.org/10.1016/j.cryobiol.2021.11.030

Rivers N; Daly J; Jones R; Temple-Smith P, 2020, 'Cryopreservation of testicular tissue from Murray River Rainbowfish, Melanotaenia fluviatilis', Scientific Reports, 10, http://dx.doi.org/10.1038/s41598-020-76378-7

Khosla K; Kangas J; Liu Y; Zhan L; Daly J; Hagedorn M; Bischof J, 2020, 'Cryopreservation and Laser Nanowarming of Zebrafish Embryos Followed by Hatching and Spawning', Advanced Biosystems, 4, http://dx.doi.org/10.1002/adbi.202000138

Rivers N; Daly J; Temple-Smith P, 2020, 'New directions in assisted breeding techniques for fish conservation', Reproduction, Fertility and Development, 32, pp. 807 - 821, http://dx.doi.org/10.1071/RD19457

Daly J; Bouwmeester J; Zuchowicz N; Lager C; Page C; Khosla K; Bischof J; Hagedorn M, 2020, 'Securing coral reef biodiversity with cryopreservation', Cryobiology, 97, pp. 279 - 279, http://dx.doi.org/10.1016/j.cryobiol.2020.10.116

Cirino L; Wen ZH; Hsieh K; Huang CL; Leong QL; Wang LH; Chen CS; Daly J; Tsai S; Lin C, 2019, 'First instance of settlement by cryopreserved coral larvae in symbiotic association with dinoflagellates', Scientific Reports, 9, http://dx.doi.org/10.1038/s41598-019-55374-6

Bouwmeester J; Daly J; Zuchowicz N; Lager C; Hagedorn M, 2019, 'Climate Change Alters The Cryophysiology Of Coral Symbiotic Dinoflagellates', Cryobiology, 91, pp. 170 - 170, http://dx.doi.org/10.1016/j.cryobiol.2019.10.100

Daly J; Bouwmeester J; Zuchowicz N; Khosla K; Bischof J; Hagedorn M, 2019, 'Securing Global Coral Biodiversity: Vitrification And Laser Warming Of Coral Larvae And Symbionts', Cryobiology, 91, pp. 170 - 170, http://dx.doi.org/10.1016/j.cryobiol.2019.10.098

Hagedorn MM; Daly JP; Carter VL; Cole KS; Jaafar Z; Lager CVA; Parenti LR, 2018, 'Cryopreservation of Fish Spermatogonial Cells: The Future of Natural History Collections', Scientific Reports, 8, http://dx.doi.org/10.1038/s41598-018-24269-3

Daly J; Zuchowicz N; Nuñez Lendo CI; Khosla K; Lager C; Henley EM; Bischof J; Kleinhans FW; Lin C; Peters EC; Hagedorn M, 2018, 'Successful cryopreservation of coral larvae using vitrification and laser warming', Scientific Reports, 8, http://dx.doi.org/10.1038/s41598-018-34035-0

Yang H; Daly J; Carmichael C; Matthews J; Varga ZM; Tiersch T, 2016, 'A Procedure-Spanning Analysis of Plasma Membrane Integrity for Assessment of Cell Viability in Sperm Cryopreservation of Zebrafish Danio rerio', Zebrafish, 13, pp. 144 - 151, http://dx.doi.org/10.1089/zeb.2015.1176

Yang H; Daly J; Tiersch TR, 2016, 'Determination of sperm concentration using flow cytometry with simultaneous analysis of sperm plasma membrane integrity in zebrafish Danio rerio', Cytometry Part A, 89, pp. 350 - 356, http://dx.doi.org/10.1002/cyto.a.22796

Cuevas-Uribe R; Chesney EJ; Daly J; Tiersch TR, 2015, 'Vitrification of sperm from marine fish: Effect on motility and membrane integrity', Aquaculture Research, 46, pp. 1770 - 1784, http://dx.doi.org/10.1111/are.12337

Daly J; Tiersch TR, 2012, 'Sources of variation in flow cytometric analysis of aquatic species sperm: The effect of cryoprotectants on flow cytometry scatter plots and subsequent population gating', Aquaculture, 370-371, pp. 179 - 188, http://dx.doi.org/10.1016/j.aquaculture.2012.09.024

Cuevas-Uribe R; Leibo SP; Daly J; Tiersch TR, 2011, 'Production of channel catfish with sperm cryopreserved by rapid non-equilibrium cooling', Cryobiology, 63, pp. 186 - 197, http://dx.doi.org/10.1016/j.cryobiol.2011.06.004

Cuevas-Uribe R; Yang H; Daly J; Savage MG; Walter RB; Tiersch TR, 2011, 'Production of F 1 offspring with vitrified sperm from a live-bearing fish, the green swordtail xiphophorus hellerii', Zebrafish, 8, pp. 167 - 179, http://dx.doi.org/10.1089/zeb.2011.0704

Daly J; Galloway D; Bravington W; Holland M; Ingram B, 2008, 'Cryopreservation of sperm from Murray cod, Maccullochella peelii peelii', Aquaculture, 285, pp. 117 - 122, http://dx.doi.org/10.1016/j.aquaculture.2008.08.023

Daly J; Gunn I; Kirby N; Jones R; Galloway D, 2007, 'Ultrasound examination and behavior scoring of captive broadnose sevengill sharks, Notorynchus cepedianus (Peron, 1807)', Zoo Biology, 26, pp. 383 - 395, http://dx.doi.org/10.1002/zoo.20155

Preprints

Lager C; Perry R; Daly J; Page C; Mizobe M; Bouwmeester J; Consiglio A; Carter J; Powell-Palm M; Hagedorn M, 2023, Metrics of Coral Microfragment Viability, http://dx.doi.org/10.1101/2023.01.03.522625

Daly J; Bouwmeester J; Perry R; Page C; Khosla K; Kangas J; Lager C; Hardy K; Bischof J; Hagedorn M, 2023, The first proof of concept demonstration of nanowarming in coral tissue, http://dx.doi.org/10.1101/2023.03.16.533048

Bouwmeester J; Daly J; Quinn M; Mary Hagedorn A, 2022, Isolation of Symbiodiniaceae from scleractinian coral hosts suitable for cryopreservation and laser-warming v1, http://dx.doi.org/10.17504/protocols.io.b4e3qtgn

Bouwmeester J; Daly J; Zuchowicz N; Lager C; Henley M; Quinn M; Hagedorn M, 2022, Coral Reproduction in a Changing Climate, http://dx.doi.org/10.21203/rs.3.rs-1864235/v1

Bouwmeester J; Daly J; Quinn M; Henley M; Lager C; Perry R; Page C; Hagedorn M, 2022, Securing algal endosymbiont communities for reef-building corals, http://dx.doi.org/10.1101/2022.06.14.495714

Page C; Perry R; Lager C; Daly J; Bouwmeester J; Henley M; Hagedorn M, 2022, Tank Fouling Community Enhances Coral Microfragment Growth, http://dx.doi.org/10.1101/2022.07.04.498770

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