By Dr Nona Farbehi

Journal articles

Karimi F; Farbehi N; Ziaee F; Lau K; Monfared M; Kordanovski M; Joukhdar H; Molly TG; Nordon R; Kilian KA; Stenzel MH; Lim KS; Rnjak-Kovacina J, 2024, 'Photocrosslinked Silk Fibroin Microgel Scaffolds for Biomedical Applications', Advanced Functional Materials, 34, http://dx.doi.org/10.1002/adfm.202313354

Vuong TNAM; Bartolf-Kopp M; Andelovic K; Jungst T; Farbehi N; Wise SG; Hayward C; Stevens MC; Rnjak-Kovacina J, 2024, 'Integrating Computational and Biological Hemodynamic Approaches to Improve Modeling of Atherosclerotic Arteries', Advanced Science, 11, http://dx.doi.org/10.1002/advs.202307627

Farbehi N; Neavin DR; Cuomo ASE; Studer L; MacArthur DG; Powell JE, 2024, 'Integrating population genetics, stem cell biology and cellular genomics to study complex human diseases', Nature Genetics, 56, pp. 758 - 766, http://dx.doi.org/10.1038/s41588-024-01731-9

Karimi F; Farbehi N; Ziaee F; Lau K; Monfared M; Kordanovski M; Joukhdar H; Molly TG; Nordon R; Kilian KA; Stenzel MH; Lim KS; Rnjak‐Kovacina J, 2024, 'Photocrosslinked Silk Fibroin Microgel Scaffolds for Biomedical Applications (Adv. Funct. Mater. 29/2024)', Advanced Functional Materials, 34, http://dx.doi.org/10.1002/adfm.202470158

Neavin DR; Steinmann AM; Farbehi N; Chiu HS; Daniszewski MS; Arora H; Bermudez Y; Moutinho C; Chan CL; Bax M; Tyebally M; Gnanasambandapillai V; Lam CE; Nguyen U; Hernández D; Lidgerwood GE; Graham RM; Hewitt AW; Pébay A; Palpant NJ; Powell JE, 2023, 'A village in a dish model system for population-scale hiPSC studies', Nature Communications, 14, http://dx.doi.org/10.1038/s41467-023-38704-1

Senabouth A; Daniszewski M; Lidgerwood GE; Liang HH; Hernández D; Mirzaei M; Keenan SN; Zhang R; Han X; Neavin D; Rooney L; Lopez Sanchez MIG; Gulluyan L; Paulo JA; Clarke L; Kearns LS; Gnanasambandapillai V; Chan CL; Nguyen U; Steinmann AM; McCloy RA; Farbehi N; Gupta VK; Mackey DA; Bylsma G; Verma N; MacGregor S; Watt MJ; Guymer RH; Powell JE; Hewitt AW; Pébay A, 2022, 'Transcriptomic and proteomic retinal pigment epithelium signatures of age-related macular degeneration', Nature Communications, 13, http://dx.doi.org/10.1038/s41467-022-31707-4

Li J; Lao O; Bruveris FF; Wang L; Chaudry K; Yang Z; Farbehi N; Ng ES; Stanley EG; Harvey RP; Elefanty AG; Nordon RE, 2022, 'Mimicry of embryonic circulation enhances the hoxa hemogenic niche and human blood development', Cell Reports, 40, http://dx.doi.org/10.1016/j.celrep.2022.111339

Daniszewski M; Senabouth A; Liang HH; Han X; Lidgerwood GE; Hernández D; Sivakumaran P; Clarke JE; Lim SY; Lees JG; Rooney L; Gulluyan L; Souzeau E; Graham SL; Chan CL; Nguyen U; Farbehi N; Gnanasambandapillai V; McCloy RA; Clarke L; Kearns LS; Mackey DA; Craig JE; MacGregor S; Powell JE; Pébay A; Hewitt AW, 2022, 'Retinal ganglion cell-specific genetic regulation in primary open-angle glaucoma', Cell Genomics, 2, http://dx.doi.org/10.1016/j.xgen.2022.100142

Janbandhu V; Tallapragada V; Patrick R; Li Y; Abeygunawardena D; Humphreys DT; Martin EMMA; Ward AO; Contreras O; Farbehi N; Yao E; Du J; Dunwoodie SL; Bursac N; Harvey RP, 2022, 'Hif-1a suppresses ROS-induced proliferation of cardiac fibroblasts following myocardial infarction', Cell Stem Cell, 29, pp. 281 - 297.e12, http://dx.doi.org/10.1016/j.stem.2021.10.009

Kalra K; Eberhard J; Farbehi N; Chong JJ; Xaymardan M, 2021, 'Role of PDGF-A/B Ligands in Cardiac Repair After Myocardial Infarction', Frontiers in Cell and Developmental Biology, 9, http://dx.doi.org/10.3389/fcell.2021.669188

Farbehi N; Janbandhu V; Nordon RE; Harvey RP, 2021, 'Facs enrichment of total interstitial cells and fibroblasts from adult mouse ventricles', Bio-protocol, 11, http://dx.doi.org/10.21769/BioProtoc.4028

Valdés-Mora F; Salomon R; Gloss BS; Law AMK; Venhuizen J; Castillo L; Murphy KJ; Magenau A; Papanicolaou M; Rodriguez de la Fuente L; Roden DL; Colino-Sanguino Y; Kikhtyak Z; Farbehi N; Conway JRW; Sikta N; Oakes SR; Cox TR; O'Donoghue SI; Timpson P; Ormandy CJ; Gallego-Ortega D, 2021, 'Single-cell transcriptomics reveals involution mimicry during the specification of the basal breast cancer subtype', Cell Reports, 35, http://dx.doi.org/10.1016/j.celrep.2021.108945

Valdes-Mora F; Salomon R; Gloss B; Law AMK; Murphy K; Roden DL; Castillo L; Colino-Sanguino Y; Farbehi N; Conway J; Timpson P; Ormandy CJ; Gallego-Ortega D, 2019, 'Characterisation of developmental pathways that drive metastatic progression of breast cancer at single cell resolution', Oncology Abstracts, http://dx.doi.org/10.1530/oncolabs.1.p022

Salomon R; Kaczorowski D; Valdes-Mora F; Nordon RE; Neild A; Farbehi N; Bartonicek N; Gallego-Ortega D, 2019, 'Droplet-based single cell RNAseq tools: A practical guide', Lab on a Chip, 19, pp. 1706 - 1727, http://dx.doi.org/10.1039/c8lc01239c

Farbehi N; Patrick R; Dorison A; Xaymardan M; Janbandhu V; Wystub-Lis K; Ho JWK; Nordon RE; Harvey RP, 2019, 'Single-cell expression profiling reveals dynamic flux of cardiac stromal, vascular and immune cells in health and injury', eLife, 8, pp. e43882, http://dx.doi.org/10.7554/eLife.43882

Valdes-Mora F; Salomon R; Gloss B; Law AMK; Castillo L; Murphy K; Venhuizen J; Magenau A; Papanicolau M; de la Fuente LR; Roden D; Colino-Sanguino Y; Kikhtyak Z; Farbehi N; Conway JRW; Oakes S; Sikta N; O’Donoghue S; Cox T; Timpson P; Ormandy C; Gallego-Ortega D, 2019, 'Single cell transcriptomics reveals involution mimicry during the specification of the basal breast cancer subtype', , http://dx.doi.org/10.1101/624890

Farbehi N; Patrick R; Xaymardan M; Harvey R; Nordon R, 2018, 'Large-scale, single cell RNA sequencing defines novel cellular subsets required for cardiac repair', Cytotherapy, 20, pp. S14 - S14, http://dx.doi.org/10.1016/j.jcyt.2018.02.024

Asli N; Xaymardan M; Patrick R; Farbehi N; Cornwell J; Forte E; Waardenberg A; Janbandhu V; Kesteven S; Chandrakanthan V; Malinowska H; Reinhard H; Schofield P; Christ D; Ahmed I; Bouveret R; Srivastava S; Mishra R; Dhawan J; Chong JJH; Nordon R; Macdonald P; Graham R; Feneley M; Harvey R, 2017, 'PDGFRα signaling in cardiac fibroblasts modulates quiescence, metabolism and self-renewal, and promotes anatomical and functional repair', , http://dx.doi.org/10.1101/225979

Hassanzadeh-Barforoushi A; Shemesh J; Farbehi N; Asadnia M; Yeoh GH; Harvey RP; Nordon RE; Warkiani ME; Hassanzadehbarforoushi A, 2016, 'A rapid co-culture stamping device for studying intercellular communication', Scientific Reports, 6, pp. 35618, http://dx.doi.org/10.1038/srep35618

Conference Abstracts

Farbehi N; Patrick R; Xaymardan M; Harvey R; Nordon R, 2018, 'LARGE-SCALE, SINGLE CELL RNA SEQUENCING DEFINES NOVEL CELLULAR SUBSETS REQUIRED FOR CARDIAC REPAIR', in CYTOTHERAPY, ELSEVIER SCI LTD, Vol. 20, pp. S14 - S14, http://dx.doi.org/10.1016/j.jcyt.2018.02.024

Farbehi N; Patrick R; Xaymardan M; Harvey RP; Nordon R, 2017, 'HIGH THROUGHPUT SINGLE-CELL MRNA SEQUENCING REVEALS CELLULAR HETEROGENEITY IN CARDIAC MSCS AFTER MYOCARDIAL INFARCTION (MI)', in JOURNAL OF GENE MEDICINE, WILEY, AUSTRALIA, Univ Technol Sydney, Sydney, Vol. 20, presented at Joint 10th Annual Scientific Meeting of the Australian-Gene-and-Cell-Therapy-Society (AGCTS) and Australasian-Society-for-Stem-Cell-Research (ASSCR), AUSTRALIA, Univ Technol Sydney, Sydney, 24 May 2017 - 26 May 2017, https://www.webofscience.com/api/gateway?GWVersion=2&SrcApp=PARTNER_APP&SrcAuth=LinksAMR&KeyUT=WOS:000426528300056&DestLinkType=FullRecord&DestApp=ALL_WOS&UsrCustomerID=891bb5ab6ba270e68a29b250adbe88d1

Hassanzadehbarforoushi A; Shemesh J; Farbehi N; Asadnia M; Yeoh G; Nordon R; Ebrahimi warkiani M, 2016, 'A RAPID MICROFLUIDIC STAMPING DEVICE FOR STUDYING CARDIAC STEM CELLS AND ENDOTHELIAL CELLS CO-CULTURE', in Proceedings MicroTAS 2016, Dublin, Republic of Ireland, presented at The 20th International Conference on Miniaturized Systems for Chemistry and Life Sciences (MicroTAS 2016), Dublin, Republic of Ireland, 09 October 2016 - 13 October 2016

Preprints

Liang Y; Abedini S; Farbehi N; Alinejad-Rokny H, 2024, How chromatin interactions shed light on interpreting non-coding genomic variants: opportunities and future direc-tions, http://dx.doi.org/10.48550/arxiv.2411.17956

Nazeen S; Wang X; Zielinski D; Lam I; Hallacli E; Xu P; Ethier E; Strom R; Zanella CA; Nithianandam V; Ritter D; Henderson A; Saurat N; Afroz J; Nutter-Upham A; Benyamini H; Copty J; Ravishankar S; Morrow A; Mitchel J; Neavin D; Gupta R; Farbehi N; Grundman J; Myers RH; Scherzer CR; Trojanowski JQ; Van Deerlin VM; Cooper AA; Lee EB; Erlich Y; Lindquist S; Peng J; Geschwind DH; Powell J; Studer L; Feany MB; Sunyaev SR; Khurana V, 2024, Deep sequencing of proteotoxicity modifier genes uncovers a Presenilin-2/beta-amyloid-actin genetic risk module shared among alpha-synucleinopathies., http://dx.doi.org/10.1101/2024.03.03.583145

Senabouth A; Daniszewski M; Lidgerwood GE; Liang HH; Hernández D; Mirzaei M; Zhang R; Han X; Neavin D; Rooney L; Sanchez IL; Gulluyan L; Paulo JA; Clarke L; Kearns LS; Gnanasambandapillai V; Chan C-L; Nguyen U; Steinmann AM; Zekanovic R; Farbehi N; Gupta VK; Mackey DA; Bylsma G; Verma N; MacGregor S; Guymer RH; Powell JE; Hewitt AW; Pébay A, 2021, Transcriptomic and proteomic retinal pigment epithelium signatures of age-related macular degeneration, http://dx.doi.org/10.1101/2021.08.19.457044

Daniszewski MS; Senabouth A; Liang HH; Han X; Lidgerwood GE; Hernández D; Sivakumaran P; Clarke JE; Lim SY; Lees JG; Rooney L; Gulluyan L; Souzeau E; Graham SL; Chan C-L; Nguyen U; Farbehi N; Gnanasambandapillai V; McCloy RA; Clarke L; Kearns L; Mackey DA; Craig JE; MacGregor S; Powell JE; Pébay A; Hewitt AW, 2021, Retinal ganglion cell-specific genetic regulation in primary open angle glaucoma, http://dx.doi.org/10.1101/2021.07.14.452417

Valdes-Mora F; Salomon R; Gloss B; Law AMK; Castillo L; Murphy K; Venhuizen J; Magenau A; Papanicolau M; Rodriguez de la Fuente L; Roden DL; Colino-Sanguino Y; Kikhtyak Z; Farbehi N; Conway JRW; Oakes SR; Sikta N; O'Donoghue SI; Cox TR; Timpson P; Ormandy CJ; Gallego Ortega D, Single Cell Transcriptomics Reveals Involution Mimicry During the Specification of the Basal Breast Cancer Subtype, http://dx.doi.org/10.2139/ssrn.3634808

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