By Dr Valerie Wasinger

Book Chapters

Ping P; Vondriska TM; Creighton CJ; Gandhi TKB; Yang Z; Menon R; Kwon MS; Cho SY; Drwal G; Kellmann M; Peri S; Suresh S; Gronborg M; Molina H; Chaerkady R; Rekha B; Shet AS; Gerszten RE; Wu H; Raftery M; Wasinger V; Schulz-Knappe P; Hanash SM; Paik YK; Hancock WS; States DJ; Omenn GS; Pandey A, 2006, 'A functional annotation of subproteomes in human plasma', in Exploring the Human Plasma Proteome, pp. 329 - 351, http://dx.doi.org/10.1002/9783527609482.ch16

Omenn GS; States DJ; Adamski M; Blackwell TW; Menon R; Hermjakob H; Apweiler R; Haab BB; Simpson RJ; Eddes JS; Kapp EA; Moritz RL; Chan DW; Rai AJ; Admon A; Aebersold R; Eng J; Hancock WS; Hefta SA; Meyer H; Paik YK; Yoo JS; Ping P; Pounds J; Adkins J; Qian X; Wang R; Wasinger V; Wu CY; Zhao X; Zeng R; Archakov A; Tsugita A; Beer I; Pandey A; Pisano M; Andrews P; Tammen H; Speicher DW; Hanash SM, 2006, 'Overview of the HUPO Plasma Proteome Project: Results from the pilot phase with 35 collaborating laboratories and multiple analytical groups, generating a core dataset of 3020 proteins and a publicly-available database', in Exploring the Human Plasma Proteome, pp. 1 - 35, http://dx.doi.org/10.1002/9783527609482.ch1

Wasinger VC, 2006, 'Holistic Biology of Microorganisms: Genomics, Transcriptomics, and Proteomics', in Microbial Proteomics - Functional Biology of Whole Organisms, Wiley-Liss, USA, pp. 1 - 14

Wasinger V, 2005, 'Holistic Biology of Microorganisms: Genomics, Transcriptomics, and Proteomics', in Microbial Proteomics: Functional Biology of Whole Organisms, pp. 3 - 14, http://dx.doi.org/10.1002/0471973165.ch1

Journal articles

Hamed MA; Wasinger V; Wang Q; Biazik J; Graham P; Malouf D; Bucci J; Li Y, 2024, 'Optimising Extracellular Vesicle Metabolomic Methodology for Prostate Cancer Biomarker Discovery', Metabolites, 14, http://dx.doi.org/10.3390/metabo14070367

Hamed MA; Wasinger V; Wang Q; Graham P; Malouf D; Bucci J; Li Y, 2024, 'Prostate cancer-derived extracellular vesicles metabolic biomarkers: Emerging roles for diagnosis and prognosis', Journal of Controlled Release, 371, pp. 126 - 145, http://dx.doi.org/10.1016/j.jconrel.2024.05.029

Jenkins LC; Chang WJ; Humburg P; Wasinger VC; Stone LS; Dorsey SG; Renn C; Starkweather A; Schabrun SM, 2024, 'Sex Differences in the Serum Proteomic Profile During Acute Low Back Pain—A Preliminary Study of the Relationship to Future Low Back Pain', Journal of Pain, 25, http://dx.doi.org/10.1016/j.jpain.2023.11.009

Manandhar B; Pandzic E; Deshpande N; Chen SY; Wasinger VC; Kockx M; Glaros EN; Ong KL; Thomas SR; Wilkins MR; Whan RM; Cochran BJ; Rye KA, 2024, 'ApoA-I Protects Pancreatic β-Cells from Cholesterol-Induced Mitochondrial Damage and Restores Their Ability to Secrete Insulin', Arteriosclerosis, Thrombosis, and Vascular Biology, 44, pp. E20 - E38, http://dx.doi.org/10.1161/ATVBAHA.123.319378

Lee Y; Ni J; Beretov J; Wasinger VC; Graham P; Li Y, 2023, 'Recent advances of small extracellular vesicle biomarkers in breast cancer diagnosis and prognosis', Molecular Cancer, 22, http://dx.doi.org/10.1186/s12943-023-01741-x

Jenkins LC; Chang WJ; Buscemi V; Liston M; Nicholas M; Graven-Nielsen T; Hodges PW; Wasinger VC; Stone LS; Dorsey SG; McAuley JH; Schabrun SM, 2023, 'The Understanding Persistent Pain Where it ResiDes Study of Low Back Pain Cohort Profile', New Zealand Journal of Physiotherapy, 51, pp. 199 - 216, http://dx.doi.org/10.15619/nzjp.v51i3.375

Lee Y; Ni J; Wasinger VC; Graham P; Li Y, 2023, 'Comparison Study of Small Extracellular Vesicle Isolation Methods for Profiling Protein Biomarkers in Breast Cancer Liquid Biopsies', International Journal of Molecular Sciences, 24, http://dx.doi.org/10.3390/ijms242015462

Yu J; Boland L; Catt M; Puk L; Wong N; Krockenberger M; Bennett P; Ruaux C; Wasinger VC, 2023, 'Serum proteome profiles in cats with chronic enteropathies', Journal of Veterinary Internal Medicine, 37, pp. 1358 - 1367, http://dx.doi.org/10.1111/jvim.16743

Chang WJ; Jenkins LC; Humburg P; Wasinger V; Walton DM; Schabrun SM, 2023, 'Systemic pro- and anti-inflammatory profiles in acute non-specific low back pain: An exploratory longitudinal study of the relationship to six-month outcome', PLoS ONE, 18, http://dx.doi.org/10.1371/journal.pone.0287192

Yu J; Ruaux C; Griebsch C; Boland L; Wong N; Bennett P; Wasinger VC, 2023, 'Serum proteome of dogs with chronic enteropathy', Journal of Veterinary Internal Medicine, 37, pp. 925 - 935, http://dx.doi.org/10.1111/jvim.16682

Bustamante S; Yau Y; Boys V; Chang J; Paramsothy S; Pudipeddi A; Leong RW; Wasinger VC, 2022, 'Tryptophan Metabolism ‘Hub’ Gene Expression Associates with Increased Inflammation and Severe Disease Outcomes in COVID-19 Infection and Inflammatory Bowel Disease', International Journal of Molecular Sciences, 23, http://dx.doi.org/10.3390/ijms232314776

Yau YY; Wasinger VC; Hirten RP; Chuang E; Huntsman M; Stylli J; Shimizu J; Yajnik V; Smith J; Lee SN; Singh S; Wahl C; Leong RW; Sands BE, 2021, 'Current trends in IBD - Development of mucosal-based biomarkers and a novel minimally invasive recoverable sampling system', Inflammatory Bowel Diseases, 27, pp. S17 - S24, http://dx.doi.org/10.1093/ibd/izab179

Manandhar B; Pandzic E; Deshpande N; Chen S-Y; Wasinger VC; Kockx M; Glaros E; Ong KL; Thomas S; Wilkins M; Whan R; Cochran BJ; Rye KA, 2021, 'The Anti-Oxidant Function Of Apolipoprotein A-I Rescues Pancreatic beta-Cells From Cholesterol-Induced Mitochondrial Dysfunction', ARTERIOSCLEROSIS THROMBOSIS AND VASCULAR BIOLOGY, 41, http://dx.doi.org/10.1161/atvb.41.suppl_1.122

Bai X; Ni J; Beretov J; Wasinger VC; Wang S; Zhu Y; Graham P; Li Y, 2021, 'Activation of the eIF2α/ATF4 axis drives triple-negative breast cancer radioresistance by promoting glutathione biosynthesis', Redox Biology, 43, http://dx.doi.org/10.1016/j.redox.2021.101993

Bai X; Ni J; Beretov J; Wasinger VC; Wang S; Zhu Y; Graham P; Li Y, 2021, 'Activation of the eIF2 alpha/ATF4 axis drives triple-negative breast cancer radioresistance by promoting glutathione biosynthesis', REDOX BIOLOGY, 43, http://dx.doi.org/10.1016/j.redox.2021.101993

Williams AJ; Paramsothy R; Wu N; Ghaly S; Leach S; Paramsothy S; Corte C; O'Brien C; Burke C; Wark G; Samocha-Bonet D; Lambert K; Ahlenstiel G; Wasinger V; Dutt S; Pavli P; Grimm M; Lemberg D; Connor S; Leong R; Hold G, 2021, 'Australia IBD Microbiome (AIM) Study: Protocol for a multicentre longitudinal prospective cohort study', BMJ Open, 11, http://dx.doi.org/10.1136/bmjopen-2020-042493

Wasinger VC; Lu K; Yau YY; Nash J; Lee J; Chang J; Paramsothy S; Kaakoush NO; Mitchell HM; Leong RWL, 2020, 'Spp24 is associated with endocytic signalling, lipid metabolism, and discrimination of tissue integrity for ‘leaky-gut’ in inflammatory bowel disease', Scientific Reports, 10, http://dx.doi.org/10.1038/s41598-020-69746-w

Wasinger VC; Curnoe D; Boel C; Machin N; Goh HM, 2020, 'The Molecular Floodgates of Stress-Induced Senescence Reveal Translation, Signalling and Protein Activity Central to the Post-Mortem Proteome', International Journal of Molecular Sciences, 21, pp. 6422 - 6422, http://dx.doi.org/10.3390/ijms21176422

Wasinger VC; Curnoe D; Bustamante S; Mendoza R; Shoocongdej R; Adler L; Baker A; Chintakanon K; Boel C; Tacon PSC, 2019, 'Analysis of the Preserved Amino Acid Bias in Peptide Profiles of Iron Age Teeth from a Tropical Environment Enable Sexing of Individuals Using Amelogenin MRM', Proteomics, 19, pp. e1800341, http://dx.doi.org/10.1002/pmic.201800341

Feng X; Bai X; Ni J; Wasinger VC; Beretov J; Zhu Y; Graham P; Li Y, 2019, 'CHTOP in chemoresistant epithelial ovarian cancer: A novel and potential therapeutic target', Frontiers in Oncology, 9, pp. 557, http://dx.doi.org/10.3389/fonc.2019.00557

Leong RWL; Kaakoush NO; Yau YY; Wasinger VC, 2019, 'Editorial: metabolomic biomarkers for colorectal adenocarcinoma and in the differentiation between irritable bowel syndrome and ulcerative colitis in clinical remission— confounded by the gut microbiome?', Alimentary Pharmacology and Therapeutics, 49, pp. 1086 - 1087, http://dx.doi.org/10.1111/apt.15171

Lee JY; Wasinger VC; Yau YY; Chuang E; Yajnik V; Leong RWL, 2018, 'Molecular pathophysiology of epithelial barrier dysfunction in inflammatory bowel diseases', Proteomes, 6, pp. 17, http://dx.doi.org/10.3390/PROTEOMES6020017

Wu D; Ni J; Beretov J; Cozzi P; Willcox M; Wasinger V; Walsh B; Graham P; Li Y, 2017, 'Urinary biomarkers in prostate cancer detection and monitoring progression', Critical Reviews in Oncology/Hematology, 118, pp. 15 - 26, http://dx.doi.org/10.1016/j.critrevonc.2017.08.002

Chang J; Leong RW; Wasinger VC; Ip M; Yang M; Phan TG, 2017, 'Impaired Intestinal Permeability Contributes to Ongoing Bowel Symptoms in Patients With Inflammatory Bowel Disease and Mucosal Healing', Gastroenterology, 153, pp. 723 - 731.e1, http://dx.doi.org/10.1053/j.gastro.2017.05.056

Mourad FH; Yau Y; Wasinger VC; Leong RW, 2017, 'Proteomics in Inflammatory Bowel Disease: Approach Using Animal Models', Digestive Diseases and Sciences, 62, pp. 2266 - 2276, http://dx.doi.org/10.1007/s10620-017-4673-0

Yau YY; Leong RWL; Pudipeddi A; Redmond D; Wasinger VC, 2017, 'Serological epithelial component proteins identify intestinal complications in Crohn's disease', Molecular and Cellular Proteomics, 16, pp. 1244 - 1257, http://dx.doi.org/10.1074/mcp.M116.066506

Trist BG; Davies KM; Cottam V; Genoud S; Ortega R; Roudeau S; Carmona A; De Silva K; Wasinger V; Lewis SJG; Sachdev PS; Smith B; Troakes C; Vance C; Shaw C; Al-Sarraj S; Ball HJ; Halliday GM; Hare DJ; Double KL, 2017, 'Amyotrophic lateral sclerosis-like superoxide dismutase 1 proteinopathy is associated with neuronal loss in Parkinson's disease brain', Acta Neuropathologica, http://dx.doi.org/10.1007/s00401-017-1726-6

Chang L; Ni J; Beretov J; Wasinger VC; Hao J; Bucci J; Malouf D; Gillatt D; Graham PH; Li Y, 2017, 'Identification of protein biomarkers and signaling pathways associated with prostate cancer radioresistance using label-free LC-MS/MS proteomic approach', Scientific Reports, 7, pp. 41834, http://dx.doi.org/10.1038/srep41834

Cochran BJ; Hou L; Manavalan APC; Moore BM; Tabet F; Sultana A; Torres LC; Tang S; Shrestha S; Senanayake P; Patel M; Ryder WJ; Bongers A; Maraninchi M; Wasinger VC; Westerterp M; Tall AR; Barter PJ; Rye K-A, 2017, 'Impact of Perturbed Pancreatic beta-Cell Cholesterol Homeostasis on Adipose Tissue and Skeletal Muscle Metabolism (vol 65, pg 3610, 2016)', DIABETES, 66, pp. 560 - 560, http://dx.doi.org/10.2337/db17-er02b

Cochran BJ; Hou L; Manavalan APC; Moore BM; Tabet F; Sultana A; Torres LC; Tang S; Shrestha S; Senanayake P; Patel M; Ryder WJ; Bongers A; Maraninchi M; Wasinger VC; Westerterp M; Tall AR; Barter PJ; Rye KA, 2016, 'Impact of perturbed pancreatic β-cell cholesterol homeostasis on adipose tissue and skeletal muscle metabolism', Diabetes, 65, pp. 3610 - 3620, http://dx.doi.org/10.2337/db16-0668

Deng J; Wang L; Ni J; Beretov J; Wasinger V; Wu D; Duan W; Graham P; Li Y, 2016, 'Proteomics discovery of chemoresistant biomarkers for ovarian cancer therapy', Expert Review of Proteomics, http://dx.doi.org/10.1080/14789450.2016.1233065

You J; Willcox M; Fitzgerald A; Schiller B; Cozzi PJ; Russell PJ; Walsh BJ; Wasinger VC; Graham PH; Li Y, 2016, 'Absolute quantification of human tear lactoferrin using multiple reaction monitoring technique with stable-isotopic labeling', Analytical Biochemistry, 496, pp. 30 - 34, http://dx.doi.org/10.1016/j.ab.2015.12.006

Chan PP; Wasinger VC; Leong RW, 2016, 'Current application of proteomics in biomarker discovery for inflammatory bowel disease.', World J Gastrointest Pathophysiol, 7, pp. 27 - 37, http://dx.doi.org/10.4291/wjgp.v7.i1.27

Wasinger VC; Yau Y; Duo X; Zeng M; Campbell B; Shin S; Luber R; Redmond D; Leong RWL, 2016, 'Low mass blood peptides discriminative of inflammatory bowel disease (IBD) severity: A quantitative proteomic perspective', Molecular and Cellular Proteomics, 15, pp. 256 - 265, http://dx.doi.org/10.1074/mcp.M115.055095

Hao J; Graham P; Chang L; Ni J; Wasinger V; Beretov J; Deng J; Duan W; Bucci J; Malouf D; Gillatt D; Li Y, 2016, 'Proteomic identification of the lactate dehydrogenase A in a radioresistant prostate cancer xenograft mouse model for improving radiotherapy', Oncotarget, 7, pp. 74269 - 74285, http://dx.doi.org/10.18632/oncotarget.12368

Beretov J; Wasinger VC; Millar EKA; Schwartz P; Graham PH; Li Y, 2015, 'Proteomic analysis of urine to identify breast cancer biomarker candidates using a label-free LC-MS/MS approach', PLoS ONE, 10, pp. e0141876, http://dx.doi.org/10.1371/journal.pone.0141876

Yau YY; Duo X; Leong RWL; Wasinger VC, 2015, 'Reverse-polynomial dilution calibration methodology extends lower limit of quantification and reduces relative residual error in targeted peptide measurements in blood plasma', Molecular and Cellular Proteomics, 14, pp. 441 - 454, http://dx.doi.org/10.1074/mcp.M114.040790

Coumans JVF; Gau D; Poljak A; Wasinger V; Roy P; Moens PDJ, 2014, 'Profilin-1 overexpression in MDA-MB-231 breast cancer cells is associated with alterations in proteomics biomarkers of cell proliferation, survival, and motility as revealed by global proteomics analyses', OMICS A Journal of Integrative Biology, 18, pp. 778 - 791, http://dx.doi.org/10.1089/omi.2014.0075

Lei C; Wasinger V; Graham P; Hao J; Ni J; Beretov J; Bucci J; Cozzi P; Kearsley J; Li Y, 2014, 'THE USE OF LABEL-FREE LC-MS/MS APPROACH TO IDENTIFY SIGNALING PATHWAYS ASSOCIATED WITH PROSTATE CANCER RADIORESISTANCE', ASIA-PACIFIC JOURNAL OF CLINICAL ONCOLOGY, 10, pp. 130 - 130, https://www.webofscience.com/api/gateway?GWVersion=2&SrcApp=PARTNER_APP&SrcAuth=LinksAMR&KeyUT=WOS:000345350900164&DestLinkType=FullRecord&DestApp=ALL_WOS&UsrCustomerID=891bb5ab6ba270e68a29b250adbe88d1

Frölich S; Shahparee A; Wasinger VC; Wallach M, 2014, 'In vivo localization of antibodies raised against Eimeria maxima wall forming bodies during sexual intracellular development', Parasitology, 141, pp. 1726 - 1735, http://dx.doi.org/10.1017/S0031182014001012

Kim PY; Tan O; Diakiw SM; Carter D; Sekerye EO; Wasinger VC; Liu T; Kavallaris M; Norris MD; Haber M; Chesler L; Dolnikov A; Trahair TN; Cheung NK; Marshall GM; Cheung BB; Sekyere E, 2014, 'Identification of plasma Complement C3 as a potential biomarker for neuroblastoma using a quantitative proteomic approach', Journal of Proteomics, 96, pp. 1 - 12, http://dx.doi.org/10.1016/j.jprot.2013.10.032

Yau YY; Leong RWL; Shin S; Bustamante S; Pickford R; Hejazi L; Campbell B; Wasinger VC, 2014, 'Bimodal plasma metabolomics strategy identifies novel inflammatory metabolites in inflammatory bowel diseases', Discovery Medicine, 18, pp. 113 - 124

Coumans JVF; Gau D; Poljak A; Wasinger V; Roy P; Moens P, 2014, 'Green fluorescent protein expression triggers proteome changes in breast cancer cells', Experimental Cell Research, 320, pp. 33 - 45, http://dx.doi.org/10.1016/j.yexcr.2013.07.019

Beretov J; Wasinger VC; Graham PH; Millar EK; Kearsley JH; Li Y, 2014, 'Proteomics for breast cancer urine biomarkers', , 63, pp. 123 - 167, http://dx.doi.org/10.1016/B978-0-12-800094-6.00004-2

Beretov J; Wasinger VC; Schwartz P; Graham PH; Li Y, 2014, 'A Standardized and Reproducible Urine Preparation Protocol for Cancer Biomarkers Discovery', Biomarkers in Cancer, 6, pp. bic.s17991 - bic.s17991, http://dx.doi.org/10.4137/bic.s17991

Lee THY; Mitchell A; Lau SL; An H; Rajeaskariah P; Wasinger V; Raftery M; Bryant K; Tedla N, 2013, 'Glycosylation in a mammalian expression system is critical for the production of functionally active leukocyte immunoglobulin-like receptor A3 protein', Journal of Biological Chemistry, 288, pp. 32873 - 32885, http://dx.doi.org/10.1074/jbc.M113.478578

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