Select Publications

Book Chapters

Omenn GS;States DJ;Adamski M;Blackwell TW;Menon R;Hermjakob H;Apweiler R;Haab BB;Simpson RJ;Eddes JS;Kapp EA;Moritz RL;Chan DW;Rai AJ;Admon A;Aebersold R;Eng J;Hancock WS;Hefta SA;Meyer H;Paik YK;Yoo JS;Ping P;Pounds J;Adkins J;Qian X;Wang R;Wasinger V;Wu CY;Zhao X;Zeng R;Archakov A;Tsugita A;Beer I;Pandey A;Pisano M;Andrews P;Tammen H;Speicher DW;Hanash SM, 2006, 'Overview of the HUPO Plasma Proteome Project: Results from the pilot phase with 35 collaborating laboratories and multiple analytical groups, generating a core dataset of 3020 proteins and a publicly-', in Exploring the Human Plasma Proteome, pp. 1 - 35, http://dx.doi.org/10.1002/9783527609482.ch1

Ping P;Vondriska TM;Creighton CJ;Gandhi TK B;Yang Z;Menon R;Kwon MS;Cho SY;Drwal G;Kellmann M;Peri S;Suresh S;Gronborg M;Molina H;Chaerkady R;Rekha B;Shet AS;Gerszten RE;Wu H;Raftery M;Wasinger V;Schulz-Knappe P;Hanash SM;Paik YK;Hancock WS;States DJ;Omenn GS;Pandey A, 2006, 'A functional annotation of subproteomes in human plasma', in Exploring the Human Plasma Proteome, pp. 329 - 351, http://dx.doi.org/10.1002/9783527609482.ch16

Wasinger V, 2005, 'Holistic Biology of Microorganisms: Genomics, Transcriptomics, and Proteomics', in Microbial Proteomics: Functional Biology of Whole Organisms, pp. 3 - 14, http://dx.doi.org/10.1002/0471973165.ch1

Wasinger V, 2005, 'Holistic biology of microorganisms: Genomics, transcriptomics, and proteomics', in Methods of Biochemical Analysis, edn. 1, pp. 1 - 14

Journal articles

Lee JY;Wasinger VC;Yau YY;Chuang E;Yajnik V;Leong RW, 2018, 'Molecular Pathophysiology of Epithelial Barrier Dysfunction in Inflammatory Bowel Diseases.', Proteomes, vol. 6, http://dx.doi.org/10.3390/proteomes6020017

Mourad FH;Yau Y;Wasinger VC;Leong RW, 2017, 'Proteomics in Inflammatory Bowel Disease: Approach Using Animal Models', Digestive Diseases and Sciences, vol. 62, pp. 2266 - 2276, http://dx.doi.org/10.1007/s10620-017-4673-0

Cochran BJ;Hou L;Manavalan AP C;Moore BM;Tabet F;Sultana A;Torres LC;Tang S;Shrestha S;Senanayake P;Patel M;Ryder WJ;Bongers A;Maraninchi M;Wasinger VC;Westerterp M;Tall AR;Barter PJ;Rye K-A, 2017, 'Impact of Perturbed Pancreatic beta-Cell Cholesterol Homeostasis on Adipose Tissue and Skeletal Muscle Metabolism (vol 65, pg 3610, 2016)', DIABETES, vol. 66, pp. 560 - 560, http://dx.doi.org/10.2337/db17-er02b

Chang J;Leong RW;Wasinger VC;Ip M;Yang M;Phan TG, 2017, 'Impaired Intestinal Permeability Contributes to Ongoing Bowel Symptoms in Patients With Inflammatory Bowel Disease and Mucosal Healing', Gastroenterology, vol. 153, pp. 723 - 731.e1, http://dx.doi.org/10.1053/j.gastro.2017.05.056

Wu D;Ni J;Beretov J;Cozzi P;Willcox M;Wasinger V;Walsh B;Graham P;Li Y, 2017, 'Urinary biomarkers in prostate cancer detection and monitoring progression', Critical Reviews in Oncology/Hematology, vol. 118, pp. 15 - 26, http://dx.doi.org/10.1016/j.critrevonc.2017.08.002

Yau YY;Leong RW L;Pudipeddi A;Redmond D;Wasinger VC, 2017, 'Serological epithelial component proteins identify intestinal complications in Crohn's disease', Molecular and Cellular Proteomics, vol. 16, pp. 1244 - 1257, http://dx.doi.org/10.1074/mcp.M116.066506

Trist BG;Davies KM;Cottam V;Genoud S;Ortega R;Roudeau S;Carmona A;De Silva K;Wasinger V;Lewis SJ G;Sachdev P;Smith B;Troakes C;Vance C;Shaw C;Al-Sarraj S;Ball HJ;Halliday GM;Hare DJ;Double KL, 2017, 'Amyotrophic lateral sclerosis-like superoxide dismutase 1 proteinopathy is associated with neuronal loss in Parkinson’s disease brain', Acta Neuropathologica, vol. 134, pp. 113 - 127, http://dx.doi.org/10.1007/s00401-017-1726-6

Chang L;Ni J;Beretov J;Wasinger VC;Hao J;Bucci J;Malouf D;Gillatt D;Graham PH;Li Y, 2017, 'Identification of protein biomarkers and signaling pathways associated with prostate cancer radioresistance using label-free LC-MS/MS proteomic approach', Scientific Reports, vol. 7, http://dx.doi.org/10.1038/srep41834

Cochran BJ;Hou L;Manavalan AP C;Moore BM;Tabet F;Sultana A;Torres LC;Tang S;Shrestha S;Senanayake P;Patel M;Ryder WJ;Bongers A;Maraninchi M;Wasinger VC;Westerterp M;Tall AR;Barter PJ;Rye KA, 2016, 'Impact of perturbed pancreatic β-cell cholesterol homeostasis on adipose tissue and skeletal muscle metabolism', Diabetes, vol. 65, pp. 3610 - 3620, http://dx.doi.org/10.2337/db16-0668

Hao J;Graham P;Chang L;Ni J;Wasinger V;Beretov J;Deng J;Duan W;Bucci J;Malouf D;Gillatt D;Li Y, 2016, 'Proteomic identification of the lactate dehydrogenase A in a radioresistant prostate cancer xenograft mouse model for improving radiotherapy', Oncotarget, vol. 7, pp. 74269 - 74285, http://dx.doi.org/10.18632/oncotarget.12368

Deng J;Wang L;Ni J;Beretov J;Wasinger V;Wu D;Duan W;Graham P;Li Y, 2016, 'Proteomics discovery of chemoresistant biomarkers for ovarian cancer therapy', Expert Review of Proteomics, vol. 13, pp. 905 - 915, http://dx.doi.org/10.1080/14789450.2016.1233065

Chan PP;Wasinger VC;Leong RW, 2016, 'Current application of proteomics in biomarker discovery for inflammatory bowel disease.', World J Gastrointest Pathophysiol, vol. 7, pp. 27 - 37, http://dx.doi.org/10.4291/wjgp.v7.i1.27

You J;Willcox M;Fitzgerald A;Schiller B;Cozzi PJ;Russell PJ;Walsh BJ;Wasinger VC;Graham PH;Li Y, 2016, 'Absolute quantification of human tear lactoferrin using multiple reaction monitoring technique with stable-isotopic labeling', Analytical Biochemistry, vol. 496, pp. 30 - 34, http://dx.doi.org/10.1016/j.ab.2015.12.006

Wasinger VC;Yau Y;Duo X;Zeng M;Campbell B;Shin S;Luber R;Redmond D;Leong RW L, 2016, 'Low mass blood peptides discriminative of inflammatory bowel disease (IBD) severity: A quantitative proteomic perspective', Molecular and Cellular Proteomics, vol. 15, pp. 256 - 265, http://dx.doi.org/10.1074/mcp.M115.055095

Beretov J;Wasinger VC;Millar EK A;Schwartz P;Graham PH;Li Y, 2015, 'Proteomic analysis of urine to identify breast cancer biomarker candidates using a label-free LC-MS/MS approach', PLoS ONE, vol. 10, http://dx.doi.org/10.1371/journal.pone.0141876

Yau YY;Duo X;Leong RW L;Wasinger VC, 2015, 'Reverse-polynomial dilution calibration methodology extends lower limit of quantification and reduces relative residual error in targeted peptide measurements in blood plasma', Molecular and Cellular Proteomics, vol. 14, pp. 441 - 454, http://dx.doi.org/10.1074/mcp.M114.040790

Yau YY;Leong RW L;Shin S;Bustamante S;Pickford R;Hejazi L;Campbell B;Wasinger VC, 2014, 'Bimodal plasma metabolomics strategy identifies novel inflammatory metabolites in inflammatory bowel diseases', Discovery Medicine, vol. 18, pp. 113 - 124

Coumans JV F;Gau D;Poljak A;Wasinger V;Roy P;Moens PD J, 2014, 'Profilin-1 overexpression in MDA-MB-231 breast cancer cells is associated with alterations in proteomics biomarkers of cell proliferation, survival, and motility as revealed by global proteomics analy', OMICS A Journal of Integrative Biology, vol. 18, pp. 778 - 791, http://dx.doi.org/10.1089/omi.2014.0075

Beretov J;Wasinger VC;Schwartz P;Graham PH;Li Y, 2014, 'A standardized and reproducible urine preparation protocol for cancer biomarkers discovery.', Biomark Cancer, vol. 6, pp. 21 - 27, http://dx.doi.org/10.4137/BIC.S17991

Frölich S;Shahparee A;Wasinger VC;Wallach M, 2014, 'In vivo localization of antibodies raised against Eimeria maxima wall forming bodies during sexual intracellular development', Parasitology, vol. 141, pp. 1726 - 1735, http://dx.doi.org/10.1017/S0031182014001012

Beretov J;Wasinger VC;Graham PH;Millar EK;Kearsley JH;Li Y, 2014, 'Proteomics for breast cancer urine biomarkers', Advances in Clinical Chemistry, vol. 63, pp. 123 - 167, http://dx.doi.org/10.1016/B978-0-12-800094-6.00004-2

Kim PY;Tan O;Diakiw SM;Carter D;Sekerye EO;Wasinger VC;Liu T;Kavallaris M;Norris MD;Haber M;Chesler L;Dolnikov A;Trahair TN;Cheung NK;Marshall GM;Cheung BB, 2014, 'Identification of plasma Complement C3 as a potential biomarker for neuroblastoma using a quantitative proteomic approach', Journal of Proteomics, vol. 96, pp. 1 - 12, http://dx.doi.org/10.1016/j.jprot.2013.10.032

Cruciani F;Wasinger V;Turroni S;Calanni F;Donders G;Brigidi P;Vitali B, 2013, 'Proteome profiles of vaginal fluids from women affected by bacterial vaginosis and healthy controls: Outcomes of rifaximin treatment', Journal of Antimicrobial Chemotherapy, vol. 68, pp. 2648 - 2659, http://dx.doi.org/10.1093/jac/dkt244

Wang M;Han B;Wasinger V, 2013, 'Advances in quantitative mass spectrometry.', Int J Proteomics, vol. 2013, pp. 621029, http://dx.doi.org/10.1155/2013/621029

You J;Willcox MD;Madigan MC;Wasinger V;Schiller B;Walsh BJ;Graham PH;Kearsley JH;Li Y, 2013, 'Tear Fluid Protein Biomarkers', Advances in Clinical Chemistry, vol. 62, pp. 151 - 196, http://dx.doi.org/10.1016/B978-0-12-800096-0.00004-4

Wasinger VC;Zeng M;Yau Y, 2013, 'Current status and advances in quantitative proteomic mass spectrometry.', Int J Proteomics, vol. 2013, pp. 180605, http://dx.doi.org/10.1155/2013/180605

Lee TH Y;Mitchell A;Lau SL;An H;Rajeaskariah P;Wasinger V;Raftery M;Bryant K;Tedla N, 2013, 'Glycosylation in a mammalian expression system is critical for the production of functionally active leukocyte immunoglobulin-like receptor A3 protein', Journal of Biological Chemistry, vol. 288, pp. 32873 - 32885, http://dx.doi.org/10.1074/jbc.M113.478578

Balasubramanian SA;Wasinger VC;Pye DC;Willcox MD P, 2013, 'Preliminary identifcation of differentially expressed tear proteins in keratoconus', Molecular Vision, vol. 19, pp. 2124 - 2134

Yau Y;Leong RW;Zeng M;Wasinger VC, 2013, 'Proteomics and metabolomics in inflammatory bowel disease', Journal of Gastroenterology and Hepatology (Australia), vol. 28, pp. 1076 - 1086, http://dx.doi.org/10.1111/jgh.12193

Coumans JV F;Moens P;Gau D;Roy P;Poljak A;Wasinger V, 2013, 'Green fluorescent protein expression triggers proteome changes in breast cancer cells', Experimental Cell Research, http://dx.doi.org/10.1016/j.yexcr.2013.07.019

Norazman N;Wu W;Li H;Wasinger V;Zhang H;Chen V, 2013, 'Evaluation of chemical cleaning of UF membranes fouled with whey protein isolates via analysis of residual protein components on membranes surface', Separation and Purification Technology, vol. 103, pp. 241 - 250, http://dx.doi.org/10.1016/j.seppur.2012.10.039

Yau Y;Leong RW;Wasinger VC, 2012, 'Enrichment of epithelial intermediate filament proteins in Crohn's disease sera associated with disease behaviour phenotype and disease activity', JOURNAL OF GASTROENTEROLOGY AND HEPATOLOGY, vol. 27, pp. 28 - 29, http://gateway.webofknowledge.com/gateway/Gateway.cgi?GWVersion=2&SrcApp=PARTNER_APP&SrcAuth=LinksAMR&KeyUT=WOS:000308642600061&DestLinkType=FullRecord&DestApp=ALL_WOS&UsrCustomerID=891bb5ab6ba270e68a

Ly L;Wasinger VC, 2011, 'Protein and peptide fractionation, enrichment and depletion: Tools for the complex proteome', Proteomics, vol. 11, pp. 513 - 534, http://dx.doi.org/10.1002/pmic.201000394

Ly L;Wasinger VC, 2010, 'Mass and charge selective protein fractionation for the differential analysis of T-cell and CD34+ stem cell proteins from cord blood', Journal of Proteomics, vol. 73, pp. 571 - 578, http://dx.doi.org/10.1016/j.jprot.2009.09.003

Zhao Z;Liu J;Wasinger VC;Malouf T;Nguyen-Khuong T;Walsh B;Willcox MD P, 2010, 'Tear lipocalin is the predominant phosphoprotein in human tear fluid', Experimental Eye Research, vol. 90, pp. 344 - 349, http://dx.doi.org/10.1016/j.exer.2009.11.013

Wasinger V;Ly L;Fitzgerald A;Walsh B, 2008, 'Prefractionation, enrichment, desalting and depleting of low volume and low abundance proteins and peptides using the MF10.', Methods in molecular biology (Clifton, N.J.), vol. 424, pp. 257 - 275

Ly L;Wasinger VC, 2008, 'Peptide enrichment and protein fractionation using selective electrophoresis', Proteomics, vol. 8, pp. 4197 - 4208, http://dx.doi.org/10.1002/pmic.200701088

Vitali B;Turroni S;Dal Piaz F;Candela M;Wasinger V;Brigidi P, 2007, 'Genetic and proteomic characterization of rifaximin resistance in Bifidobacterium infantis BI07', Research in Microbiology, vol. 158, pp. 355 - 362, http://dx.doi.org/10.1016/j.resmic.2007.02.002

McCann LA;Haywood MC;Bin HR;Simpson AM;Guilhaus M;Wasinger VC;Raftery MJ;Davey RA, 2007, 'Identification of vascular surface proteins by in vivo biotinylation: A method sufficiently sensitive to detect changes in rat liver 2 weeks after partial hepatectomy', Journal of Proteome Research, vol. 6, pp. 3108 - 3113, http://dx.doi.org/10.1021/pr070032m

Wasinger V, 2006, 'Holistic biology of microorganisms: Genomics, transcriptomics, and proteomics', Methods of Biochemical Analysis, vol. 49, pp. 3 - 14

Vitali B;Wasinger V;Brigidi P;Guilhaus M, 2005, 'A proteomic view of Bifidobacterium infantis generated by multi-dimensional chromatography coupled with tandem mass spectrometry', Proteomics, vol. 5, pp. 1859 - 1867, http://dx.doi.org/10.1002/pmic.200401080

Ping P;Vondriska TM;Creighton CJ;Gandhi TK B;Yang Z;Menon R;Kwon MS;Cho SY;Drwal G;Kellmann M;Peri S;Suresh S;Gronborg M;Molina H;Chaerkady R;Rekha B;Shet AS;Gerszten RE;Wu H;Raftery M;Wasinger V;Schulz-Knappe P;Hanash SM;Paik YK;Hancock WS;States DJ;Omenn GS;Pandey A, 2005, 'A functional annotation of subproteomes in human plasma', Proteomics, vol. 5, pp. 3506 - 3519, http://dx.doi.org/10.1002/pmic.200500140

Wasinger VC;Locke VL;Raftery MJ;Larance M;Rothemund D;Liew A;Bate I;Guilhaus M, 2005, 'Two-dimensional liquid chromatography/tandem mass spectrometry analysis of Gradiflow™ fractionated native human plasma', Proteomics, vol. 5, pp. 3397 - 3401, http://dx.doi.org/10.1002/pmic.200401160

Lawrance IC;Klopcic B;Wasinger VC, 2005, 'Proteomics: An overview', Inflammatory Bowel Diseases, vol. 11, pp. 927 - 936, http://dx.doi.org/10.1097/01.MIB.0000178264.41722.0f

Larance M;Ramm G;Stöckli J;Van Dam EM;Winata S;Wasinger V;Simpson F;Graham M;Junutula JR;Guilhaus M;James DE, 2005, 'Characterization of the role of the Rab GTPase-activating protein AS160 in insulin-regulated GLUT4 trafficking', Journal of Biological Chemistry, vol. 280, pp. 37803 - 37813, http://dx.doi.org/10.1074/jbc.M503897200

Omenn GS;States DJ;Adamski M;Blackwell TW;Menon R;Hermjakob H;Apweiler R;Haab BB;Simpson RJ;Eddes JS;Kapp EA;Moritz RL;Chan DW;Rai AJ;Admon A;Aebersold R;Eng J;Hancock WS;Hefta SA;Meyer H;Paik YK;Yoo JS;Ping P;Pounds J;Adkins J;Qian X;Wang R;Wasinger V;Wu CY;Zhao X;Zeng R;Archakov A;Tsugita A;Beer I;Pandey A;Pisano M;Andrews P;Tammen H;Speicher DW;Hanash SM, 2005, 'Overview of the HUPO Plasma Proteome Project: Results from the pilot phase with 35 collaborating laboratories and multiple analytical groups, generating a core dataset of 3020 proteins and a publicly-', Proteomics, vol. 5, pp. 3226 - 3245, http://dx.doi.org/10.1002/pmic.200500358


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