By Dr Yanming Zhu

Book Chapters

Zhu Y; Zhou W; Yin X; Hu J, 2021, '3D Fingerprint', in Encyclopedia of Cryptography, Security and Privacy, Springer Berlin Heidelberg, pp. 1 - 4, http://dx.doi.org/10.1007/978-3-642-27739-9_1513-1

Journal articles

Tchetchenian A; Zhu Y; Zhang F; O’Donnell LJ; Song Y; Meijering E, 2023, 'A comparison of manual and automated neural architecture search for white matter tract segmentation', Scientific Reports, 13, http://dx.doi.org/10.1038/s41598-023-28210-1

Zhu Y; Yin X; Hu J, 2023, 'FingerGAN: A Constrained Fingerprint Generation Scheme for Latent Fingerprint Enhancement', IEEE Transactions on Pattern Analysis and Machine Intelligence, 45, pp. 8358 - 8371, http://dx.doi.org/10.1109/TPAMI.2023.3236876

Maška M; Ulman V; Delgado-Rodriguez P; Gómez-de-Mariscal E; Nečasová T; Guerrero Peña FA; Ren TI; Meyerowitz EM; Scherr T; Löffler K; Mikut R; Guo T; Wang Y; Allebach JP; Bao R; Al-Shakarji NM; Rahmon G; Toubal IE; Palaniappan K; Lux F; Matula P; Sugawara K; Magnusson KEG; Aho L; Cohen AR; Arbelle A; Ben-Haim T; Raviv TR; Isensee F; Jäger PF; Maier-Hein KH; Zhu Y; Ederra C; Urbiola A; Meijering E; Cunha A; Muñoz-Barrutia A; Kozubek M; Ortiz-de-Solórzano C, 2023, 'The Cell Tracking Challenge: 10 years of objective benchmarking', Nature Methods, 20, pp. 1010 - 1020, http://dx.doi.org/10.1038/s41592-023-01879-y

Zhu Y; Yin X; Meijering E, 2023, 'A Compound Loss Function With Shape Aware Weight Map for Microscopy Cell Segmentation', IEEE Transactions on Medical Imaging, 42, pp. 1278 - 1288, http://dx.doi.org/10.1109/TMI.2022.3226226

Yin X; Wang S; Zhu Y; Hu J, 2023, 'A Novel Length-Flexible Lightweight Cancelable Fingerprint Template for Privacy-Preserving Authentication Systems in Resource-Constrained IoT Applications', IEEE Internet of Things Journal, 10, pp. 877 - 892, http://dx.doi.org/10.1109/JIOT.2022.3204246

Zhu Y; Wang M; Yin X; Zhang J; Meijering E; Hu J, 2023, 'Deep Learning in Diverse Intelligent Sensor Based Systems', Sensors, 23, pp. 62, http://dx.doi.org/10.3390/s23010062

Yin X; Zhu Y; Hu J, 2022, 'A Comprehensive Survey of Privacy-preserving Federated Learning: A Taxonomy, Review, and Future Directions', ACM Computing Surveys, 54, http://dx.doi.org/10.1145/3460427

Wang M; Yin X; Zhu Y; Hu J, 2022, 'Representation Learning and Pattern Recognition in Cognitive Biometrics: A Survey', Sensors, 22, pp. 5111, http://dx.doi.org/10.3390/s22145111

Yin X; Zhu Y; Hu J, 2022, 'A Subgrid-Oriented Privacy-Preserving Microservice Framework Based on Deep Neural Network for False Data Injection Attack Detection in Smart Grids', IEEE Transactions on Industrial Informatics, 18, pp. 1957 - 1967, http://dx.doi.org/10.1109/TII.2021.3102332

Yin X; Zhu Y; Xie Y; Hu J, 2022, 'PowerFDNet: Deep Learning-Based Stealthy False Data Injection Attack Detection for AC-Model Transmission Systems', IEEE Open Journal of the Computer Society, 3, pp. 149 - 161, http://dx.doi.org/10.1109/OJCS.2022.3199755

Zhu Y; Meijering E, 2021, 'Automatic improvement of deep learning-based cell segmentation in time-lapse microscopy by neural architecture search', Bioinformatics, 37, pp. 4844 - 4850, http://dx.doi.org/10.1093/bioinformatics/btab556

Yin X; Zhu Y; Hu J, 2021, '3D Fingerprint Recognition based on Ridge-Valley-Guided 3D Reconstruction and 3D Topology Polymer Feature Extraction', IEEE Transactions on Pattern Analysis and Machine Intelligence, 43, pp. 1085 - 1091, http://dx.doi.org/10.1109/tpami.2019.2949299

Yin X; Zhu Y; Hu J, 2021, 'A Survey on 2D and 3D Contactless Fingerprint Biometrics: A Taxonomy, Review, and Future Directions', IEEE Open Journal of the Computer Society, 2, pp. 370 - 381, http://dx.doi.org/10.1109/OJCS.2021.3119572

Yin X; Zhu Y; Hu J, 2020, 'Contactless Fingerprint Recognition Based on Global Minutia Topology and Loose Genetic Algorithm', IEEE Transactions on Information Forensics and Security, 15, pp. 28 - 41, http://dx.doi.org/10.1109/TIFS.2019.2918083

Li K; Zhu Y; Yang J; Jiang J, 2016, 'Video super-resolution using an adaptive superpixel-guided auto-regressive model', Pattern Recognition, 51, pp. 59 - 71, http://dx.doi.org/10.1016/j.patcog.2015.08.008

Zhu Y; Li K; Jiang J, 2014, 'Video super-resolution based on automatic key-frame selection and feature-guided variational optical flow', Signal Processing: Image Communication, 29, pp. 875 - 886, http://dx.doi.org/10.1016/j.image.2014.06.005

Luo X; Sun X; Liu B; Zhu D; Bai X; Cai H; Ji W; Cao L; Wu J; Wang M; Ding X; Zhu Y, 2013, 'Ectopic Expression of a WRKY Homolog from Glycine soja Alters Flowering Time in Arabidopsis', PLOS ONE, 8, http://dx.doi.org/10.1371/journal.pone.0073295

Sun X; Ji W; Ding X; Bai X; Cai H; Yang S; Qian X; Sun M; Zhu Y, 2013, 'GsVAMP72, a novel Glycine soja R-SNARE protein, is involved in regulating plant salt tolerance and ABA sensitivity', PLANT CELL TISSUE AND ORGAN CULTURE, 113, pp. 199 - 215, http://dx.doi.org/10.1007/s11240-012-0260-4

Sun X; Sun M; Luo X; Ding X; Ji W; Cai H; Bai X; Liu X; Zhu Y, 2013, 'A Glycine soja ABA-responsive receptor-like cytoplasmic kinase, GsRLCK, positively controls plant tolerance to salt and drought stresses', PLANTA, 237, pp. 1527 - 1545, http://dx.doi.org/10.1007/s00425-013-1864-6

Luo X; Bai X; Sun X; Zhu D; Liu B; Ji W; Cai H; Cao L; Wu J; Hu M; Liu X; Tang L; Zhu Y, 2013, 'Expression of wild soybean WRKY20 in Arabidopsis enhances drought tolerance and regulates ABA signalling', JOURNAL OF EXPERIMENTAL BOTANY, 64, pp. 2155 - 2169, http://dx.doi.org/10.1093/jxb/ert073

Zhu D; Bai X; Luo X; Chen Q; Cai H; Ji W; Zhu Y, 2013, 'Identification of wild soybean (Glycine soja) TIFY family genes and their expression profiling analysis under bicarbonate stress', PLANT CELL REPORTS, 32, pp. 263 - 272, http://dx.doi.org/10.1007/s00299-012-1360-7

Bai X; Liu J; Tang L; Cai H; Chen M; Ji W; Liu Y; Zhu Y, 2013, 'Overexpression of GsCBRLK from Glycine soja enhances tolerance to salt stress in transgenic alfalfa (Medicago sativa)', FUNCTIONAL PLANT BIOLOGY, 40, pp. 1048 - 1056, http://dx.doi.org/10.1071/FP12377

Tang L; Cai H; Ji W; Luo X; Wang Z; Wu J; Wang X; Cui L; Wang Y; Zhu Y; Bai X, 2013, 'Overexpression of GsZFP1 enhances salt and drought tolerance in transgenic alfalfa (Medicago sativa L.)', PLANT PHYSIOLOGY AND BIOCHEMISTRY, 71, pp. 22 - 30, http://dx.doi.org/10.1016/j.plaphy.2013.06.024

Zhu D; Cai H; Luo X; Bai X; Deyholos MK; Chen Q; Chen C; Ji W; Zhu Y, 2012, 'Over-expression of a novel JAZ family gene from Glycine soja, increases salt and alkali stress tolerance', BIOCHEMICAL AND BIOPHYSICAL RESEARCH COMMUNICATIONS, 426, pp. 273 - 279, http://dx.doi.org/10.1016/j.bbrc.2012.08.086

Luo X; Cui N; Zhu Y; Cao L; Zhai H; Cai H; Ji W; Wang X; Zhu D; Li Y; Bai X, 2012, 'Over-expression of GsZFP1, an ABA-responsive C2H2-type zinc finger protein lacking a QALGGH motif, reduces ABA sensitivity and decreases stomata size', Journal of Plant Physiology, 169, pp. 1192 - 1202, http://dx.doi.org/10.1016/j.jplph.2012.03.019

Liu X; Zhu Y; Zhai H; Cai H; Ji W; Luo X; Li J; Bai X, 2012, 'AtPP2CG1, a protein phosphatase 2C, positively regulates salt tolerance of Arabidopsis in abscisic acid-dependent manner', BIOCHEMICAL AND BIOPHYSICAL RESEARCH COMMUNICATIONS, 422, pp. 710 - 715, http://dx.doi.org/10.1016/j.bbrc.2012.05.064

Luo X; Bai X; Zhu D; Li Y; Ji W; Cai H; Wu J; Liu B; Zhu Y, 2012, 'GsZFP1, a new Cys2/His2-type zinc-finger protein, is a positive regulator of plant tolerance to cold and drought stress', Planta, 235, pp. 1141 - 1155, http://dx.doi.org/10.1007/s00425-011-1563-0

Sun X; Li Y; Cai H; Bai X; Ji W; Ding X; Zhu Y, 2012, 'The Arabidopsis AtbZIP1 transcription factor is a positive regulator of plant tolerance to salt, osmotic and drought stresses', Journal of Plant Research, 125, pp. 429 - 438, http://dx.doi.org/10.1007/s10265-011-0448-4

Yang L; Ji W; Gao P; Li Y; Cai H; Bai X; Chen Q; Zhu Y, 2012, 'GsAPK, an ABA-Activated and Calcium-Independent SnRK2-Type Kinase from G. soja, Mediates the Regulation of Plant Tolerance to Salinity and ABA Stress', PLOS ONE, 7, http://dx.doi.org/10.1371/journal.pone.0033838

Zhu D; Bai X; Chen C; Chen Q; Cai H; Li Y; Ji W; Zhai H; Lv D; Luo X; Zhu Y, 2011, 'GsTIFY10, a novel positive regulator of plant tolerance to bicarbonate stress and a repressor of jasmonate signaling', Plant Molecular Biology, 77, pp. 285 - 297, http://dx.doi.org/10.1007/s11103-011-9810-0

Shu Y; Li Y; Zhu Z; Bai X; Cai H; Ji W; Guo D; Zhu Y, 2011, 'SNPs discovery and CAPS marker conversion in soybean', Molecular Biology Reports, 38, pp. 1841 - 1846, http://dx.doi.org/10.1007/s11033-010-0300-2

Gao P; Bai X; Yang L; Lv D; Pan X; Li Y; Cai H; Ji W; Chen Q; Zhu Y, 2011, 'Osa-MIR393: A salinity- and alkaline stress-related microRNA gene', Molecular Biology Reports, 38, pp. 237 - 242, http://dx.doi.org/10.1007/s11033-010-0100-8

Li Y; Liu L; Bai X; Cai H; Ji W; Guo D; Zhu Y, 2010, 'Comparative study of discretization methods of microarray data for inferring transcriptional regulatory networks', BMC Bioinformatics, 11, http://dx.doi.org/10.1186/1471-2105-11-520

Yang L; Ji W; Zhu Y; Gao P; Li Y; Cai H; Bai X; Guo D, 2010, 'GsCBRLK, a calcium/calmodulin-binding receptor-like kinase, is a positive regulator of plant tolerance to salt and ABA stress', Journal of Experimental Botany, 61, pp. 2519 - 2533, http://dx.doi.org/10.1093/jxb/erq084

Zhai H; Bai X; Zhu Y; Li Y; Cai H; Ji W; Ji Z; Liu X; Liu X; Li J, 2010, 'A single-repeat R3-MYB transcription factor MYBC1 negatively regulates freezing tolerance in Arabidopsis', Biochemical and Biophysical Research Communications, 394, pp. 1018 - 1023, http://dx.doi.org/10.1016/j.bbrc.2010.03.114

Ji W; Zhu Y; Li Y; Yang L; Zhao X; Cai H; Bai X, 2010, 'Over-expression of a glutathione S-transferase gene, GsGST, from wild soybean (Glycine soja) enhances drought and salt tolerance in transgenic tobacco', Biotechnology Letters, 32, pp. 1173 - 1179, http://dx.doi.org/10.1007/s10529-010-0269-x

Gao P; Bai X; Yang L; Lv D; Li Y; Cai H; Ji W; Guo D; Zhu Y, 2010, 'Over-expression of osa-MIR396c decreases salt and alkali stress tolerance', Planta, 231, pp. 991 - 1001, http://dx.doi.org/10.1007/s00425-010-1104-2

Shu Y; Li Y; Zhu Y; Zhu Z; Lv D; Bai X; Cai H; Ji W; Guo D, 2010, 'Genome-wide identification of intron fragment insertion mutations and their potential use as SCAR molecular markers in the soybean', Theoretical and Applied Genetics, 121, pp. 1 - 8, http://dx.doi.org/10.1007/s00122-010-1285-x

Li Y; Zhu Y; Bai X; Cai H; Ji W; Guo D, 2009, 'ReTRN: A retriever of real transcriptional regulatory network and expression data for evaluating structure learning algorithm', Genomics, 94, pp. 349 - 354, http://dx.doi.org/10.1016/j.ygeno.2009.08.009

Li Y; Zhu Y; Liu Y; Shu Y; Meng F; Lu Y; Bai X; Liu B; Guo D, 2008, 'Genome-wide identification of osmotic stress response gene in Arabidopsis thaliana', Genomics, 92, pp. 488 - 493, http://dx.doi.org/10.1016/j.ygeno.2008.08.011

Conference Papers

Zhu Y; Tchetchenian A; Yin X; Liew A; Song Y; Meijering E, 2024, 'AC-UNet: Adaptive Connection UNet for White Matter Tract Segmentation Through Neural Architecture Search', in Proceedings - International Symposium on Biomedical Imaging, http://dx.doi.org/10.1109/ISBI56570.2024.10635404

Zhu Y; Meijering E, 2020, 'Neural Architecture Search for Microscopy Cell Segmentation', Lima, Peru, presented at Neural Architecture Search for Microscopy Cell Segmentation, Lima, Peru, 04 October 2020

Yin X; Zhu Y; Hu J, 2017, 'A robust contactless fingerprint enhancement algorithm', in Hu J; Khalil I; Tari Z; Wen S (eds.), Lecture Notes of the Institute for Computer Sciences, Social-Informatics and Telecommunications Engineering, LNICST, Springer, Melbourne, Australia, pp. 127 - 136, presented at 9th International Conference, MONAMI 2017, Melbourne, Australia, 13 December 2017 - 15 December 2017, http://dx.doi.org/10.1007/978-3-319-90775-8_11

Zhu Y; Yin X; Hu J, 2017, 'Robust fingerprint matching based on convolutional neural networks', in Hu J; Khalil I; Tari Z; Wen S (eds.), Lecture Notes of the Institute for Computer Sciences, Social-Informatics and Telecommunications Engineering, LNICST, Springer, Melbourne, Australia, pp. 56 - 65, presented at 9th International Conference, MONAMI 2017, Melbourne, Australia, 13 December 2017 - 15 December 2017, http://dx.doi.org/10.1007/978-3-319-90775-8_5

Zhu Y; Yin X; Jia X; Hu J, 2017, 'Latent Fingerprint Segmentation Based on Convolutional Neural Networks', in 2017 IEEE Workshop on Information Forensics and Security (WIFS), Rennes, France, presented at 2017 IEEE Workshop on Information Forensics and Security (WIFS), Rennes, France, 04 December 2017 - 07 December 2017, http://dx.doi.org/10.1109/WIFS.2017.8267655

Zhu Y; Hu J; Xu J, 2016, 'A robust multi-constrained model for fingerprint orientation field construction', in Proceedings of the 2016 IEEE 11th Conference on Industrial Electronics and Applications, ICIEA 2016, China, pp. 156 - 160, presented at 2016 IEEE 11th Conference on Industrial Electronics and Applications (ICIEA), China, 05 June 2016 - 07 June 2016, http://dx.doi.org/10.1109/ICIEA.2016.7603569

Zhu Y; Li K; Jiang J; Yang J, 2013, 'Adaptive video super-resolution based on superpixel-guided auto-regressive model', in Lecture Notes in Computer Science (including subseries Lecture Notes in Artificial Intelligence and Lecture Notes in Bioinformatics), pp. 453 - 464, http://dx.doi.org/10.1007/978-3-319-03731-8_42

Zhu Y; Jiang J; Li K, 2012, 'Optimized image super-resolution based on sparse representation', in Proceedings - International Conference on Pattern Recognition, pp. 1052 - 1055

Li Y; Zhu Y; Liu Y; Shu Y; Meng F; Lu Y; Liu B; Bai X; Guo D, 2008, 'Cis-regulatory element based gene finding: an application in Arabidopsis thaliana.', in Genome informatics. International Conference on Genome Informatics, pp. 177 - 187, http://dx.doi.org/10.1142/9781848163324_0015

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