By Emeritus Professor Andrew Lloyd

Preprints

Jamali E; Quadeer AA; Tedla N; McKay MR; Lloyd A; Walker M; Bull R, 2025, Anti-HCV antibodies: A battle for breadth and potency, http://dx.doi.org/10.21203/rs.3.rs-5876231/v1

Adhikari A; Abayasingam A; A NB; Kim HN; Lord M; Agapiou D; Maher L; Rodrigo C; Lloyd A; Bull R; Tedla N, 2023, Characterisation of antibody dependent cellular phagocytosis in patients infected with Hepatitis C virus with different clinical outcomes, http://dx.doi.org/10.22541/au.168992839.95818489/v1

Akerman A; Milogiannakis V; Jean T; Esneu C; Silva MR; Ison T; Fitcher C; Lopez JA; Chandra D; Naing Z; Caguicla J; Li D; Walker G; Amatayakul-Chantler S; Roth N; Manni S; Hauser T; Barnes T; Condylios A; Yeang M; Wong M; Foster C; Lee S; Song Y; Mao L; Sigmund A; Phu A; Vande More AM; Hunt S; Douglas M; Caterson I; Sandgren KJ; Bull RA; Lloyd AR; Triccas J; Tangye SG; Bartlett NW; Darley DR; Matthews G; Starck D; Rawlinson W; Brilot F; Cunningham AL; Kelleher A; Aggarwal A; Turville S, 2022, Emergence and Antibody Evasion of BQ and BA.2.75 SARS-CoV-2 Sublineages in the Face of Maturing Antibody Breadth at the Population Level, http://dx.doi.org/10.2139/ssrn.4295993

Shih ST; Cheng Q; Carson J; Valerio H; Sheehan Y; Gray RT; Cunningham EB; Kwon J; Lloyd AR; Dore GJ; Wiseman V; Grebely J, 2022, Optimizing Point-of-Care Testing Strategies for Diagnosis and Treatment of Hepatitis C Virus Infection in Australia: A Model-Based Cost-Effectiveness Analysis, http://dx.doi.org/10.2139/ssrn.4267510

Shih ST; Cheng Q; Carson J; Valerio H; Sheehan Y; Gray RT; Cunningham EB; Kwon J; Lloyd AR; Dore GJ; Wiseman V; Grebely J, 2022, Optimizing Point-of-Care Testing Strategies for Diagnosis and Treatment of Hepatitis C Virus Infection in Australia: A Model-Based Cost-Effectiveness Analysis, http://dx.doi.org/10.2139/ssrn.4267527

Balachandran H; Phetsouphanh C; Agapiou D; Adhikari A; Rodrigo C; Hammoud M; Shrestha LB; Keoshkerian E; Gupta M; Turville S; Christ D; King C; Sasson S; Bartlett A; Grubor-Bauk B; Rawlinson W; Aggarwal A; Stella AO; Klemm V; Mina MM; Post JJ; Hudson B; Gilroy N; Konecny P; Ahlenstiel G; Dwyer D; Sorrell TC; Kelleher A; Tedla N; Lloyd AR; Martinello M; Bull RA, 2021, Maintenance of Broad Neutralising Antibodies and Memory B Cells 12 Months Post-Infection Is Predicted by SARS-CoV-2 Specific CD4+ T Cell Responses, http://dx.doi.org/10.2139/ssrn.3920641

Hajarizadeh B; Grebely J; Byrne M; Marks P; Amin J; McManus H; Butler T; Cunningham EB; Vickerman P; Martin NK; McHutchison JG; Brainard DM; Treloar C; Chambers GM; Grant L; Mcgrath C; Lloyd AR; Dore GJ; Group S-CS, 2020, Reduced Hepatitis C Incidence Associated with Rapid Treatment Scale-Up in Australian Prisons: Treatment-as-Prevention in the SToP-C Study, http://dx.doi.org/10.2139/ssrn.3709824

Langevin J; Featherstone LA; Di Giallonardo F; Horsburgh BA; Lloyd A; Rawlinson W; Bull RA; Kelleher A; Coin LJM; group THDMW, A distributed, privacy-preserving platform for linkage of epidemiological data with pathogen genome sequences, http://dx.doi.org/10.64898/2026.01.18.26344367

Baird S; Ashley CL; Marsh-Wakefield F; Alca S; Ashhurst TM; Ferguson AL; Lukeman H; Counoupas C; Post JJ; Konecny P; Bartlett A; Martinello M; Bull RA; Lloyd A; Grey A; Hutchings O; Palendira U; Britton WJ; Steain M; Triccas JA, A unique cytotoxic CD4+ T cells signature defines critical COVID-19, http://dx.doi.org/10.1101/2023.02.17.23286059

Harrison F; Mortby ME; Lloyd AR; Guastella AJ; Trollor JN; Sachdev PS; Brodaty H, Apathy, dementia risk and mortality: long-term associations in a population-based prospective cohort of older adults, http://dx.doi.org/10.1101/2025.03.03.25323298

Rizzetto S; Koppstein DN; Samir J; Singh M; Reed JH; Cai CH; Lloyd AR; Eltahla AA; Goodnow CC; Luciani F, B-cell receptor reconstruction from single-cell RNA-seq with VDJPuzzle, http://dx.doi.org/10.1101/181156

Maduranga S; Valencia BM; Sigera C; Weeratunga P; Fernando D; Rajapakse S; Rapadas M; Deveson IW; Lloyd AR; Bull R; Rodrigo C, Between- and within-host mutation of dengue virus, http://dx.doi.org/10.1101/2025.10.12.680595

Kabir KMA; Sigera C; Maduranga S; Weeratunga P; Rajapakse S; Fernando D; Lloyd AR; Bull RA; Rodrigo C, Chikungunya masquerading as dengue infection in Sri Lanka uncovered by metagenomics, http://dx.doi.org/10.1101/2025.05.30.25328620

Maduranga S; Valencia BM; Sigera C; Weeratunga P; Fernando D; Rajapakse S; Lloyd AR; Bull R; Stone H; Rodrigo C, DENcode: A model for haplotype-informed transmission probability of dengue virus, http://dx.doi.org/10.64898/2026.02.26.708194

Carson JM; Barbieri S; Verich A; Tu E; Lloyd A; Dore GJ; Matthews GV; Martinello M, Development of a machine learning model to predict short duration HCV treatment response, http://dx.doi.org/10.1101/2025.09.19.25336147

Lohmann V; Rothhaar P; Heuss C; Tulessin M; Wang Z; Seong HG-T; Förster C; Quistrebert J; Chai H; Reineke M; Benning L; Honegger J; Hofmann M; Thimme R; Timm J; Cooke G; Schnitzler P; Merle U; Shoukry NH; Bruneau J; Rodrigo C; Lloyd A; Bull R; Ansari A; Mogler C; McLauchlan J; Forns X; Pérez-Del-Pulgar S, Highly replicating hepatitis C virus variants emerge in immunosuppressed patients causing severe disease, http://dx.doi.org/10.21203/rs.3.rs-6194507/v1

Rizzetto S; Eltahla AA; Lin P; Bull R; Lloyd AR; Ho JWK; Venturi V; Luciani F, Impact of sequencing depth and read length on single cell RNA sequencing data: lessons from T cells, http://dx.doi.org/10.1101/134130

Bull R; Abayasingam A; Balachandran H; Agapiou D; Rodrigo C; Keoshkerian E; Li H; Brasher N; Christ D; Rouet R; Burnett D; Grubor-Bauk B; Rawlinson W; Turville S; Aggarwal A; Brilot F; Mina M; Post J; Hudson B; Gilroy N; Dwyer D; Sasson S; Tea F; Pilli D; Tedla N; Lloyd A; Martinello M, Long-term persistence of neutralizing memory B cells in SARS-CoV-2, http://dx.doi.org/10.21203/rs.3.rs-92527/v1

Adhikari A; Abayasingam A; Rodrigo C; Agapiou D; Pandzic E; Brasher NA; Fernando BSM; Keoshkerian E; Li H; Kim HN; Lord M; Popovic G; Rawlinson W; Mina M; Post JJ; Hudson B; Gilroy N; Bartlett AW; Ahlenstiel G; Grubor-Bauk B; Dwyer D; Konecny P; Lloyd AR; Martinello M; Bull RA; Tedla N, Longitudinal characterisation of phagocytic and neutralisation functions of anti-Spike antibodies in plasma of patients after SARS-CoV-2 infection, http://dx.doi.org/10.1101/2021.12.21.473774

Moallemi S; Poljak A; Tedla N; Sigera C; Weeratunga P; Fernando D; Rajapakse S; Lloyd AR; Rodrigo C, New predictive biomarkers for plasma leakage in dengue fever, http://dx.doi.org/10.1101/2025.07.03.25330389

Kwon JA; Bretaña NA; Kronfli N; Dussault C; Grant L; Galouzis J; Hoey W; Blogg J; Lloyd AR; Gray RT, Preparing correctional settings for the next pandemic: a modelling study of COVID-19 outbreaks in two high-income countries, http://dx.doi.org/10.1101/2023.05.08.23289690

Wyller V; Selvakumar J; Havdal L; Drevvatne M; Brodwall E; Berven L; Stiansen-Sonerud T; Einvik G; Leegaard T; Tjade T; Michelsen A; Mollnes T; Lund-Johansen F; Holmøy T; Zetterberg H; Blennow K; Sandler C; Cvejic E; Lloyd A, Prevalence and predictors of long COVID among non-hospitalised adolescents and young adults: a prospective controlled cohort study, http://dx.doi.org/10.21203/rs.3.rs-2021203/v1

Cai C; Samir J; Pirozyan MR; Adikari TN; Gupta M; Leung P; Hughes B; Van der Byl W; Rizzetto S; Elthala A; Keoshkerian E; Palgen J-L; Peters T; Nguyen THO; Louie R; Kedzierska K; Gaudieri S; Bull RA; Lloyd AR; Luciani F, Single cell multi-omics reveals early elevated function and multiple fates within human progenitor exhausted CD8+ T cells, http://dx.doi.org/10.1101/2021.09.09.459584

Richardson A; Corley S; Delic N; Li H; Lloyd A; Girolamo N, Single-cell RNA sequencing of murine limbal epithelia reveals Gas1 as a novel stem/progenitor cell marker for the corneal epithelium, http://dx.doi.org/10.21203/rs.3.rs-4921718/v1

Walker MR; Leung P; Keoshkerian E; Pirozyan MR; Lloyd AR; Luciani F; Bull RA, Temporal dynamics of viral fitness and the adaptive immune response in HCV infection, http://dx.doi.org/10.1101/2024.09.07.611784

Kwon JA; Bretaña NA; Grant L; Galouzis J; Hoey W; Blogg J; Lloyd AR; Gray RT, The COVID-19 Incarceration Model: a tool for corrections staff to analyze outbreaks of COVID-19, http://dx.doi.org/10.1101/2021.02.18.21252032

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