Select Publications

Journal articles

Chaqroun A; Hartard C; Josse T; Taverniers A; Jeulin H; Gantzer C; Murray JM; Bertrand I; Schvoerer E, 2022, 'SARS-CoV-2 Variability in Patients and Wastewaters—Potential Immuno-Modulation during the Shift from Delta to Omicron', Biomedicines, vol. 10, http://dx.doi.org/10.3390/biomedicines10092080

Murray JM, 2021, 'Dynamics of latent HIV under clonal expansion', PLoS Pathogens, vol. 17, pp. e1010165, http://dx.doi.org/10.1371/journal.ppat.1010165

Akand EH; Murray JM, 2021, 'NGlyAlign: an automated library building tool to align highly divergent HIV envelope sequences', BMC Bioinformatics, vol. 22, pp. 54, http://dx.doi.org/10.1186/s12859-020-03901-y

Hall MT; Smith MA; Simms KT; Barnabas R; Murray JM; Canfell K, 2021, 'Elimination of cervical cancer in Tanzania: Modelled analysis of elimination in the context of endemic HIV infection and active HIV control', International Journal of Cancer, vol. 149, pp. 297 - 306, http://dx.doi.org/10.1002/ijc.33533

Hartard C; Fenaux H; Gentilhomme A; Murray JM; Akand E; Laugel E; Berger S; Maul A; de Rougemont A; Jeulin H; Remen T; Bensenane M; Bronowicki JP; Gantzer C; Bertrand I; Schvoerer E, 2021, 'Variability in molecular characteristics of Hepatitis E virus quasispecies could modify viral surface properties and transmission', Journal of Viral Hepatitis, vol. 28, pp. 1078 - 1090, http://dx.doi.org/10.1111/jvh.13513

Vaneckova P; Wade S; Weber M; Murray JM; Grogan P; Caruana M; Banks E; Canfell K, 2021, 'Birth-cohort estimates of smoking initiation and prevalence in 20thcentury Australia: Synthesis of data from 33 surveys and 385,810 participants', PLoS ONE, vol. 16, pp. e0250824, http://dx.doi.org/10.1371/journal.pone.0250824

Bockmann JH; Kohsar M; Murray JM; Hamed V; Dandri M; Lüth S; Lohse AW; Schulze-Zur-wiesch J, 2021, 'High rates of liver cirrhosis and hepatocellular carcinoma in chronic hepatitis b patients with metabolic and cardiovascular comorbidities', Microorganisms, vol. 9, http://dx.doi.org/10.3390/microorganisms9050968

Angstmann CN; Erickson AM; Henry BI; McGann AV; Murray JM; Nichols JA, 2021, 'A general framework for fractional order compartment models', SIAM Review, vol. 63, pp. 375 - 392, http://dx.doi.org/10.1137/21M1398549

Akand EH; Maher SJ; Murray JM, 2020, 'Mutational networks of escape from transmitted HIV-1 infection', PLoS ONE, vol. 15, pp. e0243391, http://dx.doi.org/10.1371/journal.pone.0243391

Hall MT; Smith MA; Simms KT; Barnabas RV; Canfell K; Murray JM, 2020, 'The past, present and future impact of HIV prevention and control on HPV and cervical disease in Tanzania: A modelling study', PLoS ONE, vol. 15, http://dx.doi.org/10.1371/journal.pone.0231388

Bockmann JH; Grube M; Hamed V; Von Felden J; Landahl J; Wehmeyer M; Giersch K; Hall MT; Murray JM; Dandri M; Lüth S; Lohse AW; Lütgehetmann M; Schulze Zur Wiesch J, 2020, 'High rates of cirrhosis and severe clinical events in patients with HBV/HDV co-infection: longitudinal analysis of a German cohort', BMC Gastroenterology, vol. 20, pp. 24, http://dx.doi.org/10.1186/s12876-020-1168-9

Jeulin H; Jeanmaire E; Murray JM; Malve B; André M; Melliez H; Lanoix JP; Hustache-Mathieu L; Partisani M; Goehringer F; May T; Schvoerer E, 2019, 'Treatment as prevention enrolling at least 75% of individuals on ART will be needed to significantly reduce HIV prevalence in a HIV cohort', Journal of Clinical Virology, vol. 120, pp. 27 - 32, http://dx.doi.org/10.1016/j.jcv.2019.08.010

Murray JM; Ribeiro RM, 2018, 'Special issue “Mathematical modeling of viral infections”', Viruses, vol. 10, http://dx.doi.org/10.3390/v10060303

Murray JM, 2018, 'Latent HIV dynamics and implications for sustained viral suppression in the absence of antiretroviral therapy', JOURNAL OF VIRUS ERADICATION, vol. 4, pp. 91 - 98, https://www.webofscience.com/api/gateway?GWVersion=2&SrcApp=PARTNER_APP&SrcAuth=LinksAMR&KeyUT=WOS:000441194200005&DestLinkType=FullRecord&DestApp=ALL_WOS&UsrCustomerID=891bb5ab6ba270e68a29b250adbe88d1

Ledger S; Howe A; Turville S; Aggarwal A; Savkovic B; Ong A; Wolstein O; Boyd M; Millington M; Gorry PR; Murray JM; Symonds G, 2018, 'Analysis and dissociation of anti-HIV effects of shRNA to CCR5 and the fusion inhibitor C46', Journal of Gene Medicine, vol. 20, http://dx.doi.org/10.1002/jgm.3006

Dawson B; Young L; Murray JM; Wilkinson I, 2017, 'Drivers of supplier-customer relationship profitability in China: Assessing International Joint Ventures versus State Owned Enterprises', Industrial Marketing Management, vol. 66, pp. 29 - 41, http://dx.doi.org/10.1016/j.indmarman.2017.06.009

Murray JM; Zaunders J; Emery S; Cooper DA; Hey-Nguyen WJ; Koelsch KK; Kelleher AD, 2017, 'HIV dynamics linked to memory CD4+ T cell homeostasis', PLoS ONE, vol. 12, http://dx.doi.org/10.1371/journal.pone.0186101

Goyal A; Murray JM, 2017, 'Roadmap to control HBV and HDV epidemics in China', Journal of Theoretical Biology, vol. 423, pp. 41 - 52, http://dx.doi.org/10.1016/j.jtbi.2017.04.007

Angstmann CN; Erickson AM; Henry BI; McGann A; Murray J; Nichols J, 2017, 'Fractional order compartment models', SIAM Journal on Applied Mathematics, vol. 77, pp. 430 - 446, http://dx.doi.org/10.1137/16M1069249

Murray JM; Maher S; Mota T; Suzuki K; Kelleher AD; Center RJ; Purcell D, 2017, 'Differentiating founder and chronic HIV envelope sequences', PLoS ONE, vol. 12, http://dx.doi.org/10.1371/journal.pone.0171572

Zaunders J; Howe A; Ledger S; Kelleher A; Murray J; Symonds G, 2017, '23 Knockdown of CCR5 expression in antigen-specific cytotoxic CD4 T cells', Journal of Virus Eradication, vol. 3, pp. 14 - 15, http://dx.doi.org/10.1016/s2055-6640(20)30728-7

Goyal A; Murray JM, 2016, 'Recognizing the impact of endemic hepatitis D virus on hepatitis B virus eradication', Theoretical Population Biology, vol. 112, pp. 60 - 69, http://dx.doi.org/10.1016/j.tpb.2016.08.004

Goyal A; Murray JM, 2016, 'Cost-Effectiveness of Peg-Interferon, Interferon and Oral Nucleoside Analogues in the Treatment of Chronic Hepatitis B and D Infections in China', Clinical Drug Investigation, vol. 36, pp. 637 - 648, http://dx.doi.org/10.1007/s40261-016-0409-8

Goyal A; Murray JM, 2016, 'Modelling the impact of cell-to-cell transmission in hepatitis B virus', PLoS ONE, vol. 11, http://dx.doi.org/10.1371/journal.pone.0161978

Goyal A; Murray JM, 2016, 'Dynamics of in vivo hepatitis D virus infection', Journal of Theoretical Biology, vol. 398, pp. 9 - 19, http://dx.doi.org/10.1016/j.jtbi.2016.03.018

Velay A; Jeulin H; Eschlimann M; Malvé B; Goehringer F; Bensenane M; Frippiat JP; Abraham P; Ismail AM; Murray JM; Combet C; Zoulim F; Bronowicki JP; Schvoerer E, 2016, 'Characterization of hepatitis B virus surface antigen variability and impact on HBs antigen clearance under nucleos(t)ide analogue therapy', Journal of Viral Hepatitis, vol. 23, pp. 387 - 398, http://dx.doi.org/10.1111/jvh.12498

Murray JM; Stancevic O; Lütgehetmann M; Wursthorn K; Petersen J; Dandri M, 2016, 'Variability in long-term hepatitis B virus dynamics under antiviral therapy', Journal of Theoretical Biology, vol. 391, pp. 74 - 80, http://dx.doi.org/10.1016/j.jtbi.2015.12.005

Maher SJ; Murray JM, 2016, 'The unrooted set covering connected subgraph problem differentiating between HIV envelope sequences', European Journal of Operational Research, vol. 248, pp. 668 - 680, http://dx.doi.org/10.1016/j.ejor.2015.07.011

Erickson AM; Henry BI; Murray JM; Klasse PJ; Angstmann CN, 2015, 'Predicting First Traversal Times for Virions and Nanoparticles in Mucus with Slowed Diffusion', Biophysical Journal, vol. 109, pp. 164 - 172, http://dx.doi.org/10.1016/j.bpj.2015.05.034

Hey-Cunningham WJ; Murray JM; Natarajan V; Amin J; Moore CL; Emery S; Cooper DA; Zaunders J; Kelleher AD; Koelsch KK; PINT study team , 2015, 'Early antiretroviral therapy with raltegravir generates sustained reductions in HIV reservoirs but not lower T-cell activation levels.', AIDS, vol. 29, pp. 911 - 919, http://dx.doi.org/10.1097/QAD.0000000000000625

Murray JM; Goyal A, 2015, 'In silico single cell dynamics of hepatitis B virus infection and clearance', Journal of Theoretical Biology, vol. 366, pp. 91 - 102, http://dx.doi.org/10.1016/j.jtbi.2014.11.020

Goyal A; Murray JM, 2014, 'The Impact of Vaccination and Antiviral Therapy on Hepatitis B and Hepatitis D Epidemiology', PLoS ONE, vol. 9, pp. e110143, http://dx.doi.org/10.1371/journal.pone.0110143

Gray RT; Vallely A; Wilson DP; Kaldor J; MacLaren D; Kelly-Hanku A; Siba P; Murray JM, 2014, 'Impact of male circumcision on the HIV epidemic in Papua New Guinea: A country with extensive foreskin cutting practices', PLoS ONE, vol. 9, http://dx.doi.org/10.1371/journal.pone.0104531

Savkovic B; Nichols J; Birkett D; Applegate T; Ledger S; Symonds G; Murray JM, 2014, 'A Quantitative Comparison of Anti-HIV Gene Therapy Delivered to Hematopoietic Stem Cells versus CD4+ T Cells', PLoS Computational Biology, vol. 10, http://dx.doi.org/10.1371/journal.pcbi.1003681

Vallely A; Ryan CE; Allen J; Sauk JC; Simbiken CS; Wapling J; Kaima P; Kombati Z; Law G; Fehler G; Murray JM; Siba P; Kaldor JM, 2014, 'High prevalence and incidence of HIV, sexually transmissible infections and penile foreskin cutting among sexual health clinic attendees in Papua New Guinea', Sexual Health, vol. 11, pp. 58 - 66, http://dx.doi.org/10.1071/SH13197

Murray JM; Zaunders JJ; McBride KL; Xu Y; Bailey M; Suzuki K; Cooper DA; Emery S; Kelleher AD; Koelsch KK, 2014, 'HIV DNA subspecies persist in both activated and resting memory CD4+ T cells during antiretroviral therapy', Journal of Virology, vol. 88, pp. 3516 - 3526, http://dx.doi.org/10.1128/JVI.03331-13

Goyal A; Murray JM, 2014, 'Effect of interferon-alfa therapy on hepatitis D virus', Hepatology, vol. 61, pp. n/a - n/a, http://dx.doi.org/10.1002/hep.27595

Murray JM; Zaunders JJ; Koelsch KK; Natarajan V; Badralmaa Y; McBride K; Carrera A; Cooper DA; Emery S; Kelleher AD, 2013, 'Short communication: HIV blips while on antiretroviral therapy can indicate consistently detectable viral levels due to assay underreporting', AIDS Research and Human Retroviruses, vol. 29, pp. 1621 - 1625, http://dx.doi.org/10.1089/aid.2013.0132

McBride K; Xu Y; Bailey M; Seddiki N; Suzuki K; Murray JM; Gao Y; Yan C; Cooper DA; Kelleher AD; Koelsch KK; Zaunders J, 2013, 'The majority of HIV type 1 DNA in circulating CD4+ T lymphocytes is present in non-gut-homing resting memory CD4+ T cells', AIDS Research and Human Retroviruses, vol. 29, pp. 1330 - 1339, http://dx.doi.org/10.1089/aid.2012.0351

Jeulin H; Velay A; Murray JM; Schvoerer E, 2013, 'Clinical impact of hepatitis B and C virus envelope glycoproteins', World Journal of Gastroenterology, vol. 19, pp. 654 - 664, http://dx.doi.org/10.3748/wjg.v19.i5.654

Gilmore JB; Kelleher AD; Cooper DA; Murray JM, 2013, 'Explaining the determinants of first phase HIV decay dynamics through the effects of stage-dependent drug action', PLoS Computational Biology, vol. 9, pp. e1002971 (11pp), http://dx.doi.org/10.1371/journal.pcbi.1002971

Murray JM; Moenne-Loccoz R; Velay A; Habersetzer F; Doffoel M; Gut JP; Fofana I; Zeisel MB; Stoll-keller F; Baumert TF; Schvoerer E, 2013, 'Genotype 1 hepatitis C virus envelope features that determine antiviral response assessed through optimal covariance networks', PLoS ONE, vol. 8, pp. e67254, http://dx.doi.org/10.1371/journal.pone.0067254

Schvoerer E; Moenne-Loccoz R; Murray JM; Velay A; Turek M; Fofana I; Fafi-kremer S; Erba AC; Habersetzer F; Doffoel M; Gut JP; Donlin MJ; Tavis JE; Zeisel MB; Stoll-keller F; Baumert TF, 2013, 'Hepatitis C virus envelope glycoprotein signatures are associated with treatment failure and modulation of viral entry and neutralization', Journal of Infectious Diseases, vol. 207, pp. 1306 - 1315, http://dx.doi.org/10.1093/infdis/jit032

Murray JM, 2013, 'HIV Treatment as Prevention in a Developed Country Setting: The current situation and future scenarios for Australia', JAIDS Journal of Acquired Immune Deficiency Syndromes, vol. 64, pp. 409 - 416, http://dx.doi.org/10.1097/QAI.0b013e3182a6b20c

Stancevic O; Angstmann CN; Murray JM, 2013, 'Turing patterns from dynamics of early HIV infection', Bulletin of Mathematical Biology, vol. 75, pp. 774 - 795, http://dx.doi.org/10.1007/s11538-013-9834-5

Murray J; Cutcher L, 2012, 'Gendered futures, constrained choices: Undergraduate perceptions of work and family', Journal of Population Research, vol. 29, pp. 315 - 328, http://dx.doi.org/10.1007/s12546-012-9099-0

Shaddock EJ; Richards GA; Murray J, 2012, 'Lung fibrosis in deceased HIV-infected patients with Pneumocystis pneumonia', Southern African Journal of HIV Medicine, vol. 13, pp. 64 - 67, http://dx.doi.org/10.4102/sajhivmed.v13i2.140

Mota T; Murray JM; Center R; Purcell D; McCaw J, 2012, 'Application of a case-control study design to investigate genotypic signatures of HIV-1 transmission', Retrovirology, vol. 9, pp. 54, http://dx.doi.org/10.1186/1742-4690-9-54

Murray JM; McBride K; Boesecke C; Bailey MR; Amin J; Suzuki K; Baker D; Zaunders JJ; Emery S; Cooper DA; Koelsch KK; Kelleher AD, 2012, 'Integrated HIV DNA accumulates prior to treatment while episomal HIV DNA records ongoing transmission afterwards', AIDS, vol. 26, pp. 543 - 550, http://dx.doi.org/10.1097/QAD.0b013e328350fb3c

Chakrabarty SP; Murray JM, 2012, 'Modelling hepatitis C virus infection and the development of hepatocellular carcinoma', Journal of Theoretical Biology, vol. 305, pp. 24 - 29, http://dx.doi.org/10.1016/j.jtbi.2012.03.030


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