By Emeritus Professor John Murray

Journal articles

Murray JM; Murray DD; Schvoerer E; Akand EH, 2024, 'SARS-CoV-2 Delta and Omicron community transmission networks as added value to contact tracing', Journal of Infection, 88, pp. 173 - 179, http://dx.doi.org/10.1016/j.jinf.2024.01.004

Hall MT; Simms KT; Murray JM; Keane A; Nguyen DTN; Caruana M; Lui G; Kelly H; Eckert LO; Santesso N; de Sanjose S; Swai EE; Rangaraj A; Owiredu MN; Gauvreau C; Demke O; Basu P; Arbyn M; Dalal S; Broutet N; Canfell K, 2023, 'Benefits and harms of cervical screening, triage and treatment strategies in women living with HIV', Nature Medicine, 29, pp. 3059 - 3066, http://dx.doi.org/10.1038/s41591-023-02601-3

Kyaw W; Chai RC; Khoo WH; Goldstein LD; Croucher PI; Murray JM; Phan TG, 2023, 'ENTRAIN: integrating trajectory inference and gene regulatory networks with spatial data to co-localize the receptor–ligand interactions that specify cell fate', Bioinformatics, 39, http://dx.doi.org/10.1093/bioinformatics/btad765

Chaqroun A; Hartard C; Josse T; Taverniers A; Jeulin H; Gantzer C; Murray JM; Bertrand I; Schvoerer E, 2022, 'SARS-CoV-2 Variability in Patients and Wastewaters—Potential Immuno-Modulation during the Shift from Delta to Omicron', Biomedicines, 10, http://dx.doi.org/10.3390/biomedicines10092080

Murray JM, 2021, 'Dynamics of latent HIV under clonal expansion', PLoS Pathogens, 17, http://dx.doi.org/10.1371/journal.ppat.1010165

Akand EH; Murray JM, 2021, 'NGlyAlign: an automated library building tool to align highly divergent HIV envelope sequences', BMC Bioinformatics, 22, http://dx.doi.org/10.1186/s12859-020-03901-y

Hall MT; Smith MA; Simms KT; Barnabas R; Murray JM; Canfell K, 2021, 'Elimination of cervical cancer in Tanzania: Modelled analysis of elimination in the context of endemic HIV infection and active HIV control', International Journal of Cancer, 149, pp. 297 - 306, http://dx.doi.org/10.1002/ijc.33533

Hartard C; Fenaux H; Gentilhomme A; Murray JM; Akand E; Laugel E; Berger S; Maul A; de Rougemont A; Jeulin H; Remen T; Bensenane M; Bronowicki JP; Gantzer C; Bertrand I; Schvoerer E, 2021, 'Variability in molecular characteristics of Hepatitis E virus quasispecies could modify viral surface properties and transmission', Journal of Viral Hepatitis, 28, pp. 1078 - 1090, http://dx.doi.org/10.1111/jvh.13513

Vaneckova P; Wade S; Weber M; Murray JM; Grogan P; Caruana M; Banks E; Canfell K, 2021, 'Birth-cohort estimates of smoking initiation and prevalence in 20^th century Australia: Synthesis of data from 33 surveys and 385,810 participants', PLoS ONE, 16, http://dx.doi.org/10.1371/journal.pone.0250824

Bockmann JH; Kohsar M; Murray JM; Hamed V; Dandri M; Lüth S; Lohse AW; Schulze-Zur-wiesch J, 2021, 'High rates of liver cirrhosis and hepatocellular carcinoma in chronic hepatitis b patients with metabolic and cardiovascular comorbidities', Microorganisms, 9, http://dx.doi.org/10.3390/microorganisms9050968

Angstmann CN; Erickson AM; Henry BI; McGann AV; Murray JM; Nichols JA, 2021, 'A general framework for fractional order compartment models', SIAM Review, 63, pp. 375 - 392, http://dx.doi.org/10.1137/21M1398549

Akand EH; Maher SJ; Murray JM, 2020, 'Mutational networks of escape from transmitted HIV-1 infection', PLoS ONE, 15, http://dx.doi.org/10.1371/journal.pone.0243391

Hall MT; Smith MA; Simms KT; Barnabas RV; Canfell K; Murray JM, 2020, 'The past, present and future impact of HIV prevention and control on HPV and cervical disease in Tanzania: A modelling study', PLoS ONE, 15, http://dx.doi.org/10.1371/journal.pone.0231388

Bockmann JH; Grube M; Hamed V; Von Felden J; Landahl J; Wehmeyer M; Giersch K; Hall MT; Murray JM; Dandri M; Lüth S; Lohse AW; Lütgehetmann M; Schulze Zur Wiesch J, 2020, 'High rates of cirrhosis and severe clinical events in patients with HBV/HDV co-infection: longitudinal analysis of a German cohort', BMC Gastroenterology, 20, http://dx.doi.org/10.1186/s12876-020-1168-9

Jeulin H; Jeanmaire E; Murray JM; Malve B; André M; Melliez H; Lanoix JP; Hustache-Mathieu L; Partisani M; Goehringer F; May T; Schvoerer E, 2019, 'Treatment as prevention enrolling at least 75% of individuals on ART will be needed to significantly reduce HIV prevalence in a HIV cohort', Journal of Clinical Virology, 120, pp. 27 - 32, http://dx.doi.org/10.1016/j.jcv.2019.08.010

Murray JM; Ribeiro RM, 2018, 'Special issue “Mathematical modeling of viral infections”', Viruses, 10, http://dx.doi.org/10.3390/v10060303

Murray JM, 2018, 'Latent HIV dynamics and implications for sustained viral suppression in the absence of antiretroviral therapy', JOURNAL OF VIRUS ERADICATION, 4, pp. 91 - 98, https://www.webofscience.com/api/gateway?GWVersion=2&SrcApp=PARTNER_APP&SrcAuth=LinksAMR&KeyUT=WOS:000441194200005&DestLinkType=FullRecord&DestApp=ALL_WOS&UsrCustomerID=891bb5ab6ba270e68a29b250adbe88d1

Ledger S; Howe A; Turville S; Aggarwal A; Savkovic B; Ong A; Wolstein O; Boyd M; Millington M; Gorry PR; Murray JM; Symonds G, 2018, 'Analysis and dissociation of anti-HIV effects of shRNA to CCR5 and the fusion inhibitor C46', Journal of Gene Medicine, 20, http://dx.doi.org/10.1002/jgm.3006

Dawson B; Young L; Murray JM; Wilkinson I, 2017, 'Drivers of supplier-customer relationship profitability in China: Assessing International Joint Ventures versus State Owned Enterprises', Industrial Marketing Management, 66, pp. 29 - 41, http://dx.doi.org/10.1016/j.indmarman.2017.06.009

Murray JM; Zaunders J; Emery S; Cooper DA; Hey-Nguyen WJ; Koelsch KK; Kelleher AD, 2017, 'HIV dynamics linked to memory CD4+ T cell homeostasis', PLoS ONE, 12, pp. e0186101, http://dx.doi.org/10.1371/journal.pone.0186101

Goyal A; Murray JM, 2017, 'Roadmap to control HBV and HDV epidemics in China', Journal of Theoretical Biology, 423, pp. 41 - 52, http://dx.doi.org/10.1016/j.jtbi.2017.04.007

Angstmann CN; Erickson AM; Henry BI; McGann A; Murray J; Nichols J, 2017, 'Fractional order compartment models', SIAM Journal on Applied Mathematics, 77, pp. 430 - 446, http://dx.doi.org/10.1137/16M1069249

Murray JM; Maher S; Mota T; Suzuki K; Kelleher AD; Center RJ; Purcell D, 2017, 'Differentiating founder and chronic HIV envelope sequences', PLoS ONE, 12, pp. e0171572, http://dx.doi.org/10.1371/journal.pone.0171572

Zaunders J; Howe A; Ledger S; Kelleher A; Murray J; Symonds G, 2017, '23 Knockdown of CCR5 expression in antigen-specific cytotoxic CD4 T cells', Journal of Virus Eradication, 3, pp. 14 - 15, http://dx.doi.org/10.1016/s2055-6640(20)30728-7

Goyal A; Murray JM, 2016, 'Recognizing the impact of endemic hepatitis D virus on hepatitis B virus eradication', Theoretical Population Biology, 112, pp. 60 - 69, http://dx.doi.org/10.1016/j.tpb.2016.08.004

Goyal A; Murray JM, 2016, 'Cost-Effectiveness of Peg-Interferon, Interferon and Oral Nucleoside Analogues in the Treatment of Chronic Hepatitis B and D Infections in China', Clinical Drug Investigation, 36, pp. 637 - 648, http://dx.doi.org/10.1007/s40261-016-0409-8

Goyal A; Murray JM, 2016, 'Modelling the impact of cell-to-cell transmission in hepatitis B virus', PLoS ONE, 11, http://dx.doi.org/10.1371/journal.pone.0161978

Goyal A; Murray JM, 2016, 'Dynamics of in vivo hepatitis D virus infection', Journal of Theoretical Biology, 398, pp. 9 - 19, http://dx.doi.org/10.1016/j.jtbi.2016.03.018

Velay A; Jeulin H; Eschlimann M; Malvé B; Goehringer F; Bensenane M; Frippiat JP; Abraham P; Ismail AM; Murray JM; Combet C; Zoulim F; Bronowicki JP; Schvoerer E, 2016, 'Characterization of hepatitis B virus surface antigen variability and impact on HBs antigen clearance under nucleos(t)ide analogue therapy', Journal of Viral Hepatitis, 23, pp. 387 - 398, http://dx.doi.org/10.1111/jvh.12498

Murray JM; Stancevic O; Lütgehetmann M; Wursthorn K; Petersen J; Dandri M, 2016, 'Variability in long-term hepatitis B virus dynamics under antiviral therapy', Journal of Theoretical Biology, 391, pp. 74 - 80, http://dx.doi.org/10.1016/j.jtbi.2015.12.005

Maher SJ; Murray JM, 2016, 'The unrooted set covering connected subgraph problem differentiating between HIV envelope sequences', European Journal of Operational Research, 248, pp. 668 - 680, http://dx.doi.org/10.1016/j.ejor.2015.07.011

Erickson AM; Henry BI; Murray JM; Klasse PJ; Angstmann CN, 2015, 'Predicting First Traversal Times for Virions and Nanoparticles in Mucus with Slowed Diffusion', Biophysical Journal, 109, pp. 164 - 172, http://dx.doi.org/10.1016/j.bpj.2015.05.034

Hey-Cunningham WJ; Murray JM; Natarajan V; Amin J; Moore CL; Emery S; Cooper DA; Zaunders J; Kelleher AD; Koelsch KK; PINT study team ; Danta M, 2015, 'Early antiretroviral therapy with raltegravir generates sustained reductions in HIV reservoirs but not lower T-cell activation levels.', AIDS, 29, pp. 911 - 919, http://dx.doi.org/10.1097/QAD.0000000000000625

Murray JM; Goyal A, 2015, 'In silico single cell dynamics of hepatitis B virus infection and clearance', Journal of Theoretical Biology, 366, pp. 91 - 102, http://dx.doi.org/10.1016/j.jtbi.2014.11.020

Goyal A; Murray JM, 2014, 'The Impact of Vaccination and Antiviral Therapy on Hepatitis B and Hepatitis D Epidemiology', PLoS ONE, 9, pp. e110143, http://dx.doi.org/10.1371/journal.pone.0110143

Gray RT; Vallely A; Wilson DP; Kaldor J; MacLaren D; Kelly-Hanku A; Siba P; Murray JM, 2014, 'Impact of male circumcision on the HIV epidemic in Papua New Guinea: A country with extensive foreskin cutting practices', PLoS ONE, 9, pp. e104531, http://dx.doi.org/10.1371/journal.pone.0104531

Savkovic B; Nichols J; Birkett D; Applegate T; Ledger S; Symonds G; Murray JM, 2014, 'A Quantitative Comparison of Anti-HIV Gene Therapy Delivered to Hematopoietic Stem Cells versus CD4+ T Cells', PLoS Computational Biology, 10, http://dx.doi.org/10.1371/journal.pcbi.1003681

Vallely A; Ryan CE; Allen J; Sauk JC; Simbiken CS; Wapling J; Kaima P; Kombati Z; Law G; Fehler G; Murray JM; Siba P; Kaldor JM, 2014, 'High prevalence and incidence of HIV, sexually transmissible infections and penile foreskin cutting among sexual health clinic attendees in Papua New Guinea', Sexual Health, 11, pp. 58 - 66, http://dx.doi.org/10.1071/SH13197

Murray JM; Zaunders JJ; McBride KL; Xu Y; Bailey M; Suzuki K; Cooper DA; Emery S; Kelleher AD; Koelsch KK, 2014, 'HIV DNA subspecies persist in both activated and resting memory CD4⁺ T cells during antiretroviral therapy', Journal of Virology, 88, pp. 3516 - 3526, http://dx.doi.org/10.1128/JVI.03331-13

Goyal A; Murray JM, 2014, 'Effect of interferon-alfa therapy on hepatitis D virus', Hepatology, pp. n/a - n/a, http://dx.doi.org/10.1002/hep.27595

Murray JM; Zaunders JJ; Koelsch KK; Natarajan V; Badralmaa Y; McBride K; Carrera A; Cooper DA; Emery S; Kelleher AD, 2013, 'Short communication: HIV blips while on antiretroviral therapy can indicate consistently detectable viral levels due to assay underreporting', AIDS Research and Human Retroviruses, 29, pp. 1621 - 1625, http://dx.doi.org/10.1089/aid.2013.0132

McBride K; Xu Y; Bailey M; Seddiki N; Suzuki K; Murray JM; Gao Y; Yan C; Cooper DA; Kelleher AD; Koelsch KK; Zaunders J, 2013, 'The majority of HIV type 1 DNA in circulating CD4⁺ T lymphocytes is present in non-gut-homing resting memory CD4⁺ T cells', AIDS Research and Human Retroviruses, 29, pp. 1330 - 1339, http://dx.doi.org/10.1089/aid.2012.0351

Jeulin H; Velay A; Murray JM; Schvoerer E, 2013, 'Clinical impact of hepatitis B and C virus envelope glycoproteins', World Journal of Gastroenterology, 19, pp. 654 - 664, http://dx.doi.org/10.3748/wjg.v19.i5.654

Gilmore JB; Kelleher AD; Cooper DA; Murray JM, 2013, 'Explaining the determinants of first phase HIV decay dynamics through the effects of stage-dependent drug action', PLoS Computational Biology, 9, pp. e1002971 (11pp), http://dx.doi.org/10.1371/journal.pcbi.1002971

Murray JM; Moenne-Loccoz R; Velay A; Habersetzer F; Doffoel M; Gut JP; Fofana I; Zeisel MB; Stoll-keller F; Baumert TF; Schvoerer E, 2013, 'Genotype 1 hepatitis C virus envelope features that determine antiviral response assessed through optimal covariance networks', PLoS ONE, 8, pp. e67254, http://dx.doi.org/10.1371/journal.pone.0067254

Schvoerer E; Moenne-Loccoz R; Murray JM; Velay A; Turek M; Fofana I; Fafi-kremer S; Erba AC; Habersetzer F; Doffoel M; Gut JP; Donlin MJ; Tavis JE; Zeisel MB; Stoll-keller F; Baumert TF, 2013, 'Hepatitis C virus envelope glycoprotein signatures are associated with treatment failure and modulation of viral entry and neutralization', Journal of Infectious Diseases, 207, pp. 1306 - 1315, http://dx.doi.org/10.1093/infdis/jit032

Murray JM, 2013, 'HIV Treatment as Prevention in a Developed Country Setting: The current situation and future scenarios for Australia', JAIDS Journal of Acquired Immune Deficiency Syndromes, 64, pp. 409 - 416, http://dx.doi.org/10.1097/QAI.0b013e3182a6b20c

Stancevic O; Angstmann CN; Murray JM; Henry B, 2013, 'Turing patterns from dynamics of early HIV infection', Bulletin of Mathematical Biology, 75, pp. 774 - 795, http://dx.doi.org/10.1007/s11538-013-9834-5

Murray J; Cutcher L, 2012, 'Gendered futures, constrained choices: Undergraduate perceptions of work and family', Journal of Population Research, 29, pp. 315 - 328, http://dx.doi.org/10.1007/s12546-012-9099-0

Shaddock EJ; Richards GA; Murray J, 2012, 'Lung fibrosis in deceased HIV-infected patients with Pneumocystis pneumonia', Southern African Journal of HIV Medicine, 13, pp. 64 - 67, http://dx.doi.org/10.4102/sajhivmed.v13i2.140

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