Select Publications
Book Chapters
2011, 'Cell-delivered gene theraphy for HIV', in Tang Y (ed.), Recent Translational Research in HIV/AIDS, InTech, Croatia, pp. 405 - 430, http://dx.doi.org/10.5772/22658
,Journal articles
2024, 'SARS-CoV-2 Delta and Omicron community transmission networks as added value to contact tracing', Journal of Infection, 88, pp. 173 - 179, http://dx.doi.org/10.1016/j.jinf.2024.01.004
,2023, 'Benefits and harms of cervical screening, triage and treatment strategies in women living with HIV', Nature Medicine, 29, pp. 3059 - 3066, http://dx.doi.org/10.1038/s41591-023-02601-3
,2023, 'ENTRAIN: integrating trajectory inference and gene regulatory networks with spatial data to co-localize the receptor–ligand interactions that specify cell fate', Bioinformatics, 39, http://dx.doi.org/10.1093/bioinformatics/btad765
,2022, 'SARS-CoV-2 Variability in Patients and Wastewaters—Potential Immuno-Modulation during the Shift from Delta to Omicron', Biomedicines, 10, http://dx.doi.org/10.3390/biomedicines10092080
,2021, 'Dynamics of latent HIV under clonal expansion', PLoS Pathogens, 17, http://dx.doi.org/10.1371/journal.ppat.1010165
,2021, 'NGlyAlign: an automated library building tool to align highly divergent HIV envelope sequences', BMC Bioinformatics, 22, http://dx.doi.org/10.1186/s12859-020-03901-y
,2021, 'Elimination of cervical cancer in Tanzania: Modelled analysis of elimination in the context of endemic HIV infection and active HIV control', International Journal of Cancer, 149, pp. 297 - 306, http://dx.doi.org/10.1002/ijc.33533
,2021, 'Variability in molecular characteristics of Hepatitis E virus quasispecies could modify viral surface properties and transmission', Journal of Viral Hepatitis, 28, pp. 1078 - 1090, http://dx.doi.org/10.1111/jvh.13513
,2021, 'Birth-cohort estimates of smoking initiation and prevalence in 20th century Australia: Synthesis of data from 33 surveys and 385,810 participants', PLoS ONE, 16, http://dx.doi.org/10.1371/journal.pone.0250824
,2021, 'High rates of liver cirrhosis and hepatocellular carcinoma in chronic hepatitis b patients with metabolic and cardiovascular comorbidities', Microorganisms, 9, http://dx.doi.org/10.3390/microorganisms9050968
,2021, 'A general framework for fractional order compartment models', SIAM Review, 63, pp. 375 - 392, http://dx.doi.org/10.1137/21M1398549
,2020, 'Mutational networks of escape from transmitted HIV-1 infection', PLoS ONE, 15, http://dx.doi.org/10.1371/journal.pone.0243391
,2020, 'The past, present and future impact of HIV prevention and control on HPV and cervical disease in Tanzania: A modelling study', PLoS ONE, 15, http://dx.doi.org/10.1371/journal.pone.0231388
,2020, 'High rates of cirrhosis and severe clinical events in patients with HBV/HDV co-infection: longitudinal analysis of a German cohort', BMC Gastroenterology, 20, http://dx.doi.org/10.1186/s12876-020-1168-9
,2019, 'Treatment as prevention enrolling at least 75% of individuals on ART will be needed to significantly reduce HIV prevalence in a HIV cohort', Journal of Clinical Virology, 120, pp. 27 - 32, http://dx.doi.org/10.1016/j.jcv.2019.08.010
,2018, 'Special issue “Mathematical modeling of viral infections”', Viruses, 10, http://dx.doi.org/10.3390/v10060303
,2018, 'Latent HIV dynamics and implications for sustained viral suppression in the absence of antiretroviral therapy', JOURNAL OF VIRUS ERADICATION, 4, pp. 91 - 98, https://www.webofscience.com/api/gateway?GWVersion=2&SrcApp=PARTNER_APP&SrcAuth=LinksAMR&KeyUT=WOS:000441194200005&DestLinkType=FullRecord&DestApp=ALL_WOS&UsrCustomerID=891bb5ab6ba270e68a29b250adbe88d1
,2018, 'Analysis and dissociation of anti-HIV effects of shRNA to CCR5 and the fusion inhibitor C46', Journal of Gene Medicine, 20, http://dx.doi.org/10.1002/jgm.3006
,2017, 'Drivers of supplier-customer relationship profitability in China: Assessing International Joint Ventures versus State Owned Enterprises', Industrial Marketing Management, 66, pp. 29 - 41, http://dx.doi.org/10.1016/j.indmarman.2017.06.009
,2017, 'HIV dynamics linked to memory CD4+ T cell homeostasis', PLoS ONE, 12, pp. e0186101, http://dx.doi.org/10.1371/journal.pone.0186101
,2017, 'Roadmap to control HBV and HDV epidemics in China', Journal of Theoretical Biology, 423, pp. 41 - 52, http://dx.doi.org/10.1016/j.jtbi.2017.04.007
,2017, 'Fractional order compartment models', SIAM Journal on Applied Mathematics, 77, pp. 430 - 446, http://dx.doi.org/10.1137/16M1069249
,2017, 'Differentiating founder and chronic HIV envelope sequences', PLoS ONE, 12, pp. e0171572, http://dx.doi.org/10.1371/journal.pone.0171572
,2017, '23 Knockdown of CCR5 expression in antigen-specific cytotoxic CD4 T cells', Journal of Virus Eradication, 3, pp. 14 - 15, http://dx.doi.org/10.1016/s2055-6640(20)30728-7
,2016, 'Recognizing the impact of endemic hepatitis D virus on hepatitis B virus eradication', Theoretical Population Biology, 112, pp. 60 - 69, http://dx.doi.org/10.1016/j.tpb.2016.08.004
,2016, 'Cost-Effectiveness of Peg-Interferon, Interferon and Oral Nucleoside Analogues in the Treatment of Chronic Hepatitis B and D Infections in China', Clinical Drug Investigation, 36, pp. 637 - 648, http://dx.doi.org/10.1007/s40261-016-0409-8
,2016, 'Modelling the impact of cell-to-cell transmission in hepatitis B virus', PLoS ONE, 11, http://dx.doi.org/10.1371/journal.pone.0161978
,2016, 'Dynamics of in vivo hepatitis D virus infection', Journal of Theoretical Biology, 398, pp. 9 - 19, http://dx.doi.org/10.1016/j.jtbi.2016.03.018
,2016, 'Characterization of hepatitis B virus surface antigen variability and impact on HBs antigen clearance under nucleos(t)ide analogue therapy', Journal of Viral Hepatitis, 23, pp. 387 - 398, http://dx.doi.org/10.1111/jvh.12498
,2016, 'Variability in long-term hepatitis B virus dynamics under antiviral therapy', Journal of Theoretical Biology, 391, pp. 74 - 80, http://dx.doi.org/10.1016/j.jtbi.2015.12.005
,2016, 'The unrooted set covering connected subgraph problem differentiating between HIV envelope sequences', European Journal of Operational Research, 248, pp. 668 - 680, http://dx.doi.org/10.1016/j.ejor.2015.07.011
,2015, 'Predicting First Traversal Times for Virions and Nanoparticles in Mucus with Slowed Diffusion', Biophysical Journal, 109, pp. 164 - 172, http://dx.doi.org/10.1016/j.bpj.2015.05.034
,2015, 'Early antiretroviral therapy with raltegravir generates sustained reductions in HIV reservoirs but not lower T-cell activation levels.', AIDS, 29, pp. 911 - 919, http://dx.doi.org/10.1097/QAD.0000000000000625
,2015, 'In silico single cell dynamics of hepatitis B virus infection and clearance', Journal of Theoretical Biology, 366, pp. 91 - 102, http://dx.doi.org/10.1016/j.jtbi.2014.11.020
,2014, 'The Impact of Vaccination and Antiviral Therapy on Hepatitis B and Hepatitis D Epidemiology', PLoS ONE, 9, pp. e110143, http://dx.doi.org/10.1371/journal.pone.0110143
,2014, 'Impact of male circumcision on the HIV epidemic in Papua New Guinea: A country with extensive foreskin cutting practices', PLoS ONE, 9, pp. e104531, http://dx.doi.org/10.1371/journal.pone.0104531
,2014, 'A Quantitative Comparison of Anti-HIV Gene Therapy Delivered to Hematopoietic Stem Cells versus CD4+ T Cells', PLoS Computational Biology, 10, http://dx.doi.org/10.1371/journal.pcbi.1003681
,2014, 'High prevalence and incidence of HIV, sexually transmissible infections and penile foreskin cutting among sexual health clinic attendees in Papua New Guinea', Sexual Health, 11, pp. 58 - 66, http://dx.doi.org/10.1071/SH13197
,2014, 'HIV DNA subspecies persist in both activated and resting memory CD4+ T cells during antiretroviral therapy', Journal of Virology, 88, pp. 3516 - 3526, http://dx.doi.org/10.1128/JVI.03331-13
,2014, 'Effect of interferon-alfa therapy on hepatitis D virus', Hepatology, pp. n/a - n/a, http://dx.doi.org/10.1002/hep.27595
,2013, 'Short communication: HIV blips while on antiretroviral therapy can indicate consistently detectable viral levels due to assay underreporting', AIDS Research and Human Retroviruses, 29, pp. 1621 - 1625, http://dx.doi.org/10.1089/aid.2013.0132
,2013, 'The majority of HIV type 1 DNA in circulating CD4+ T lymphocytes is present in non-gut-homing resting memory CD4+ T cells', AIDS Research and Human Retroviruses, 29, pp. 1330 - 1339, http://dx.doi.org/10.1089/aid.2012.0351
,2013, 'Clinical impact of hepatitis B and C virus envelope glycoproteins', World Journal of Gastroenterology, 19, pp. 654 - 664, http://dx.doi.org/10.3748/wjg.v19.i5.654
,2013, 'Explaining the determinants of first phase HIV decay dynamics through the effects of stage-dependent drug action', PLoS Computational Biology, 9, pp. e1002971 (11pp), http://dx.doi.org/10.1371/journal.pcbi.1002971
,2013, 'Genotype 1 hepatitis C virus envelope features that determine antiviral response assessed through optimal covariance networks', PLoS ONE, 8, pp. e67254, http://dx.doi.org/10.1371/journal.pone.0067254
,2013, 'Hepatitis C virus envelope glycoprotein signatures are associated with treatment failure and modulation of viral entry and neutralization', Journal of Infectious Diseases, 207, pp. 1306 - 1315, http://dx.doi.org/10.1093/infdis/jit032
,2013, 'HIV Treatment as Prevention in a Developed Country Setting: The current situation and future scenarios for Australia', JAIDS Journal of Acquired Immune Deficiency Syndromes, 64, pp. 409 - 416, http://dx.doi.org/10.1097/QAI.0b013e3182a6b20c
,2013, 'Turing patterns from dynamics of early HIV infection', Bulletin of Mathematical Biology, 75, pp. 774 - 795, http://dx.doi.org/10.1007/s11538-013-9834-5
,2012, 'Gendered futures, constrained choices: Undergraduate perceptions of work and family', Journal of Population Research, 29, pp. 315 - 328, http://dx.doi.org/10.1007/s12546-012-9099-0
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