Select Publications

Journal articles

Cavicchioli R; Ripple WJ; Timmis KN; Azam F; Bakken LR; Baylis M; Behrenfeld MJ; Boetius A; Boyd PW; Classen AT, 2019, 'Scientists’ warning to humanity: microorganisms and climate change', Nature Reviews Microbiology,

Hamm JN; Erdmann S; Eloe-Fadrosh EA; Angeloni A; Zhong L; Brownlee C; Williams TJ; Barton K; Carswell S; Smith MA, 2019, 'Unexpected host dependency of Antarctic Nanohaloarchaeota.', Proc Natl Acad Sci U S A,

Timmis K; Cavicchioli R; Garcia JL; Nogales B; Chavarría M; Stein L; McGenity TJ; Webster N; Singh BK; Handelsman J; de Lorenzo V; Pruzzo C; Timmis J; Martín JL R; Verstraete W; Jetten M; Danchin A; Huang W; Gilbert J; Lal R; Santos H; Lee SY; Sessitsch A; Bonfante P; Gram L; Lin RT P; Ron E; Karahan ZC; van der Meer JR; Artunkal S; Jahn D; Harper L, 2019, 'The urgent need for microbiology literacy in society.', Environ Microbiol, vol. 21, pp. 1513 - 1528,

Williams TJ; Allen MA; Liao Y; Raftery MJ; Cavicchioli R, 2019, 'Sucrose metabolism in haloarchaea: Reassessment using genomics, proteomics, and metagenomics', Applied and Environmental Microbiology, vol. 85,

Cavicchioli R, 2019, 'A vision for a ‘microbcentric’ future', Microbial Biotechnology, vol. 12, pp. 26 - 29,

Tschitschko B; Erdmann S; DeMaere MZ; Roux S; Panwar P; Allen MA; Williams TJ; Brazendale S; Hancock AM; Eloe-Fadrosh EA; Cavicchioli R, 2018, 'Genomic variation and biogeography of Antarctic haloarchaea', Microbiome, vol. 6,

2018, 'Extreme Excitement about Archaea', Cell, vol. 172, pp. 1153 - 1154,

Erdmann S; Tschitschko B; Zhong L; Raftery MJ; Cavicchioli R, 2017, 'A plasmid from an Antarctic haloarchaeon uses specialized membrane vesicles to disseminate and infect plasmid-free cells', Nature Microbiology, vol. 2, pp. 1446 - 1455,

Williams TJ; Liao Y; Ye J; Kuchel RP; Poljak A; Raftery MJ; Cavicchioli R, 2017, 'Cold adaptation of the Antarctic haloarchaea Halohasta litchfieldiae and Halorubrum lacusprofundi', Environmental Microbiology, vol. 19, pp. 2210 - 2227,

Jayawardena MB; Yee LH; Poljak A; Cavicchioli R; Kjelleberg SJ; Siddiqui KS, 2017, 'Enhancement of lipase stability and productivity through chemical modification and its application to latex-based polymer emulsions', Process Biochemistry, vol. 57, pp. 131 - 140,

Williams TJ; Allen M; Tschitschko B; Cavicchioli R, 2017, 'Glycerol metabolism of haloarchaea', Environmental Microbiology, vol. 19, pp. 864 - 877,

Paez-Espino D; Chen IM A; Palaniappan K; Ratner A; Chu K; Szeto E; Pillay M; Huang J; Markowitz VM; Nielsen T; Huntemann M; Reddy TB K; Pavlopoulos GA; Sullivan MB; Campbell BJ; Chen F; McMahon K; Hallam SJ; Denef V; Cavicchioli R; Caffrey SM; Streit WR; Webster J; Handley KM; Salekdeh GH; Tsesmetzis N; Setubal JC; Pope PB; Liu WT; Rivers AR; Ivanova NN; Kyrpides NC, 2017, 'IMG/VR: A database of cultured and uncultured DNA viruses and retroviruses', Nucleic Acids Research, vol. 45, pp. D457 - D465,

Allen MA; Cavicchioli R, 2017, 'Microbial communities of aquatic environments on Heard Island characterized by pyrotag sequencing and environmental data', Scientific Reports, vol. 7,

Danovaro R; Dell'anno A; Corinaldesi C; Rastelli E; Cavicchioli R; Krupovic M; Noble RT; Nunoura T; Prangishvili D, 2016, 'Virus-mediated archaeal hecatomb in the deep seafloor', Science Advances, vol. 2,

Cavicchioli R, 2016, 'On the concept of a psychrophile', ISME Journal, vol. 10, pp. 793 - 795,

Anderson IJ; DasSarma P; Lucas S; Copeland A; Lapidus A; Del Rio TG; Tice H; Dalin E; Bruce DC; Goodwin L; Pitluck S; Sims D; Brettin TS; Detter JC; Han CS; Larimer F; Hauser L; Land M; Ivanova N; Richardson P; Cavicchioli R; DasSarma S; Woese CR; Kyrpides NC, 2016, 'Complete genome sequence of the Antarctic Halorubrum lacusprofundi type strain ACAM 34', Standards in Genomic Sciences, vol. 11,

Liao Y; Williams TJ; Ye J; Charlesworth J; Burns BP; Poljak A; Raftery MJ; Cavicchioli R, 2016, 'Morphological and proteomic analysis of biofilms from the Antarctic archaeon, Halorubrum lacusprofundi', Scientific Reports, vol. 6,

Liao Y; Williams TJ; Walsh JC; Ji M; Poljak A; Curmi PM G; Duggin IG; Cavicchioli R, 2016, 'Developing a genetic manipulation system for the Antarctic archaeon, Halorubrum lacusprofundi: Investigating acetamidase gene function', Scientific Reports, vol. 6,

Taha ; Siddiqui KS; Campanaro S; Najnin T; Deshpande N; Williams TJ; Aldrich-Wright J; Wilkins M; Curmi PM G; Cavicchioli R, 2016, 'Single TRAM domain RNA-binding proteins in Archaea: functional insight from Ctr3 from the Antarctic methanogen Methanococcoides burtonii', Environmental microbiology, vol. 18, pp. 2810 - 2824,

Tschitschko B; Williams TJ; Allen MA; Zhong L; Raftery MJ; Cavicchioli R, 2016, 'Ecophysiological distinctions of haloarchaea from a hypersaline Antarctic lake determined using metaproteomics.', Appl Environ Microbiol, vol. 82, pp. 3165 - 3173,

Najnin T; Siddiqui KS; Taha T; Elkaid N; Kornfeld G; Curmi PM G; Cavicchioli R, 2016, 'Characterization of a temperature-responsive two component regulatory system from the Antarctic archaeon, Methanococcoides burtonii.', Sci Rep, vol. 6, pp. 24278,

Richards SL; Cawley AT; Cavicchioli R; Suann CJ; Pickford R; Raftery MJ, 2016, 'Aptamer based peptide enrichment for quantitative analysis of gonadotropin-releasing hormone by LC-MS/MS', Talanta, vol. 150, pp. 671 - 680,

Cavicchioli R, 2015, 'Microbial ecology of Antarctic aquatic systems', Nature Reviews Microbiology, vol. 13, pp. 691 - 706,

Cavicchioli R; Erdmann S, 2015, 'The discovery of Antarctic RNA viruses: A new game changer', Molecular Ecology, vol. 24, pp. 4809 - 4811,

Tschitschko B; Williams TJ; Allen MA; Páez-Espino D; Kyrpides N; Zhong L; Raftery MJ; Cavicchioli R, 2015, 'Antarctic archaea–virus interactions: metaproteome-led analysis of invasion, evasion and adaptation', The ISME Journal, vol. 9, pp. 2094 - 2107,

Sun T; Socki RA; Bish DL; Harvey RP; Bao H; Niles PB; Cavicchioli R; Tonui E, 2015, 'Lost cold Antarctic deserts inferred from unusual sulfate formation and isotope signatures', Nature Communications, vol. 6,

Ertan H; Cassel C; Verma A; Poljak A; Charlton T; Aldrich-Wright J; Omar SM; Siddiqui KS; Cavicchioli R, 2015, 'A new broad specificity alkaline metalloprotease from a Pseudomonas sp. isolated from refrigerated milk: Role of calcium in improving enzyme productivity', Journal of Molecular Catalysis B: Enzymatic, vol. 113, pp. 1 - 8,

Luk AW S; Williams TJ; Erdmann S; Thane Papke R; Cavicchioli R, 2014, 'Viruses of haloarchaea', Life, vol. 4, pp. 681 - 715,

Siddiqui KS; Ertan H; Charlton T; Poljak A; Daud Khaled AK; Yang X; Marshall G; Cavicchioli R, 2014, 'Versatile peroxidase degradation of humic substances: Use of isothermal titration calorimetry to assess kinetics, and applications to industrial wastes', Journal of Biotechnology, vol. 178, pp. 1 - 11,

Williams TJ; Cavicchioli R, 2014, 'Marine metaproteomics: deciphering the microbial metabolic food web', Trends in Microbiology,

Lagkouvardos I; Weinmaier T; Lauro FM; Cavicchioli R; Rattei T; Horn M, 2014, 'Integrating metagenomic and amplicon databases to resolve the phylogenetic and ecological diversity of the Chlamydiae', ISME Journal, vol. 8, pp. 115 - 125,

Wilkins D; van Sebille E; Rintoul SR; Lauro FM; Cavicchioli R, 2013, 'Advection shapes Southern Ocean microbial assemblages independent of distance and environment effects.', Nat Commun, vol. 4, pp. 2457,

DeMaere MZ; Williams TJ; Allen MA; Brown MV; Gibson JA E; Rich J; Lauro FM; Dyall-Smith M; Davenport KW; Woyke T; Kyrpides NC; Tringe SG; Cavicchioli R, 2013, 'High level of intergenera gene exchange shapes the evolution of haloarchaea in an isolated Antarctic lake.', Proc Natl Acad Sci U S A, vol. 110, pp. 16939 - 16944,

Yau S; Lauro FM; Williams TJ; Demaere MZ; Brown MV; Rich J; Gibson JA E; Cavicchioli R, 2013, 'Metagenomic insights into strategies of carbon conservation and unusual sulfur biogeochemistry in a hypersaline Antarctic lake', ISME Journal, vol. 7, pp. 1944 - 1961,

Wilkins D; Lauro FM; Williams TJ; Demaere MZ; Brown MV; Hoffman JM; Andrews-Pfannkoch C; Mcquaid JB; Riddle MJ; Rintoul SR; Cavicchioli R, 2013, 'Biogeographic partitioning of Southern Ocean microorganisms revealed by metagenomics', Environmental Microbiology, vol. 15, pp. 1318 - 1333,

Wilkins D; Yau S; Williams TJ; Allen MA; Brown MV; Demaere MZ; Lauro FM; Cavicchioli R, 2013, 'Key microbial drivers in Antarctic aquatic environments', FEMS Microbiology Reviews, vol. 37, pp. 303 - 335,

Siddiqui KS; Williams TJ; Wilkins D; Yau S; Allen MA; Brown MV; Lauro FM; Cavicchioli R, 2013, 'Psychrophiles', Annual Review of Earth and Planetary Sciences, vol. 41, pp. 87 - 115,

Williams TJ; Wilkins D; Long E; Evans F; Demaere MZ; Raftery MJ; Cavicchioli R, 2013, 'The role of planktonic Flavobacteria in processing algal organic matter in coastal East Antarctica revealed using metagenomics and metaproteomics', Environmental Microbiology, vol. 15, pp. 1302 - 1317,

Matallana-Surget S; Cavicchioli R; Fauconnier C; Wattiez R; Leroy B; Joux F; Raftery MJ; Lebaron P, 2013, 'Shotgun Redox Proteomics: Identification and Quantitation of Carbonylated Proteins in the UVB-Resistant Marine Bacterium, Photobacterium angustum S14', PLoS ONE, vol. 8,

Swan BK; Tupper B; Sczyrba A; Lauro FM; Martinez-Garcia M; Gonźalez JM; Luo H; Wright JJ; Landry ZC; Hanson NW; Thompson BP; Poulton NJ; Schwientek P; Acinas SG; Giovannoni SJ; Moran MA; Hallam SJ; Cavicchioli R; Woyke T; Stepanauskas R, 2013, 'Prevalent genome streamlining and latitudinal divergence of planktonic bacteria in the surface ocean', Proceedings of the National Academy of Sciences of the United States of America, vol. 110, pp. 11463 - 11468,

Grzymski JJ; Riesenfeld CS; Williams TJ; Dussaq AM; Ducklow H; Erickson M; Cavicchioli R; Murray AE, 2012, 'A metagenomic assessment of winter and summer bacterioplankton from Antarctica Peninsula coastal surface waters', ISME Journal, vol. 6, pp. 1901 - 1915,

Brown MV; Lauro FM; Demaere MZ; Muir L; Wilkins D; Thomas T; Riddle MJ; Fuhrman JA; Andrews-Pfannkoch C; Hoffman JM; McQuaid JB; Allen A; Rintoul SR; Cavicchioli R, 2012, 'Global biogeography of SAR11 marine bacteria', Molecular Systems Biology, vol. 8,

Williams TJ; Long E; Evans F; Demaere MZ; Lauro FM; Raftery MJ; Ducklow H; Grzymski JJ; Murray AE; Cavicchioli R, 2012, 'A metaproteomic assessment of winter and summer bacterioplankton from Antarctic Peninsula coastal surface waters', ISME Journal, vol. 6, pp. 1883 - 1900,

Ertan H; Siddiqui KS; Muenchhoff J; Charlton T; Cavicchioli R, 2012, 'Kinetic and thermodynamic characterization of the functional properties of a hybrid versatile peroxidase using isothermal titration calorimetry: Insight into manganese peroxidase activation and lignin', Biochimie, vol. 94, pp. 1221 - 1231,

Cavicchioli R, 2011, 'Archaea - Timeline of the third domain', Nature Reviews Microbiology, vol. 9, pp. 51 - 61,

Cavicchioli R; Amils R; Wagner D; Mcgenity T, 2011, 'Life and applications of extremophiles', Environmental Microbiology, vol. 13, pp. 1903 - 1907,

Campanaro S; Williams TJ; Burg DW; De Francisci D; Treu L; Lauro FM; Cavicchioli R, 2011, 'Temperature-dependent global gene expression in the Antarctic archaeon Methanococcoides burtonii', Environmental Microbiology, vol. 13, pp. 2018 - 2038,

Cavicchioli R; Charlton T; Ertan H; Omar SM; Siddiqui KS; Williams TJ, 2011, 'Biotechnological uses of enzymes from psychrophiles', Microbial Biotechnology, vol. 4, pp. 449 - 460,

De Francisci D; Campanaro S; Kornfeld G; Siddiqui KS; Williams TJ; Ertan H; Treu L; Pilak O; Lauro FM; Harrop SJ; Curmi PM G; Cavicchioli R, 2011, 'The RNA polymerase subunits E/F from the Antarctic archaeon Methanococcoides burtonii bind to specific species of mRNA', Environmental Microbiology, vol. 13, pp. 2039 - 2055,

DeMaere MZ; Lauro FM; Thomas T; Yau S; Cavicchioli R, 2011, 'Simple high-throughput annotation pipeline (SHAP)', Bioinformatics, vol. 27, pp. 2431 - 2432,

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