Select Publications

Books

Cavicchioli R, (ed.), 2007, Archaea: Molecular and Cellular Biology, AMER SOC MICROBIOLOGY, http://gateway.webofknowledge.com/gateway/Gateway.cgi?GWVersion=2&SrcApp=PARTNER_APP&SrcAuth=LinksAMR&KeyUT=WOS:000278887900026&DestLinkType=FullRecord&DestApp=ALL_WOS&UsrCustomerID=891bb5ab6ba270e68a

Book Chapters

Woese CR, 2007, 'The Archaea: an Invitation to Evolution', in Cavicchioli R (ed.), ARCHAEA: MOLECULAR AND CELLULAR BIOLOGY, AMER SOC MICROBIOLOGY, pp. 1 - 13, http://gateway.webofknowledge.com/gateway/Gateway.cgi?GWVersion=2&SrcApp=PARTNER_APP&SrcAuth=LinksAMR&KeyUT=WOS:000278887900002&DestLinkType=FullRecord&DestApp=ALL_WOS&UsrCustomerID=891bb5ab6ba270e68a

Cavicchioli R;Goodchild A;Raftery M, 2005, 'Proteomics of Archaea', in Microbial Proteomics: Functional Biology of Whole Organisms, pp. 57 - 72, http://dx.doi.org/10.1002/0471973165.ch5

Journal articles

Williams TJ;Liao Y;Ye J;Kuchel RP;Poljak A;Raftery MJ;Cavicchioli R, 2017, 'Cold adaptation of the Antarctic haloarchaea Halohasta litchfieldiae and Halorubrum lacusprofundi', Environmental Microbiology, vol. 19, pp. 2210 - 2227, http://dx.doi.org/10.1111/1462-2920.13705

Jayawardena MB;Yee LH;Poljak A;Cavicchioli R;Kjelleberg SJ;Siddiqui KS, 2017, 'Enhancement of lipase stability and productivity through chemical modification and its application to latex-based polymer emulsions', Process Biochemistry, vol. 57, pp. 131 - 140, http://dx.doi.org/10.1016/j.procbio.2017.03.014

Williams TJ;Allen M;Tschitschko B;Cavicchioli R, 2017, 'Glycerol metabolism of haloarchaea', Environmental Microbiology, vol. 19, pp. 864 - 877, http://dx.doi.org/10.1111/1462-2920.13580

Paez-Espino D;Chen IM A;Palaniappan K;Ratner A;Chu K;Szeto E;Pillay M;Huang J;Markowitz VM;Nielsen T;Huntemann M;Reddy TB K;Pavlopoulos GA;Sullivan MB;Campbell BJ;Chen F;McMahon K;Hallam SJ;Denef V;Cavicchioli R;Caffrey SM;Streit WR;Webster J;Handley KM;Salekdeh GH;Tsesmetzis N;Setubal JC;Pope PB;Liu WT;Rivers AR;Ivanova NN;Kyrpides NC, 2017, 'IMG/VR: A database of cultured and uncultured DNA viruses and retroviruses', Nucleic Acids Research, vol. 45, pp. D457 - D465, http://dx.doi.org/10.1093/nar/gkw1030

Allen MA;Cavicchioli R, 2017, 'Microbial communities of aquatic environments on Heard Island characterized by pyrotag sequencing and environmental data', Scientific Reports, vol. 7, http://dx.doi.org/10.1038/srep44480

Liao Y;Williams TJ;Ye J;Charlesworth J;Burns BP;Poljak A;Raftery MJ;Cavicchioli R, 2016, 'Morphological and proteomic analysis of biofilms from the Antarctic archaeon, Halorubrum lacusprofundi', Scientific Reports, vol. 6, http://dx.doi.org/10.1038/srep37454

Anderson IJ;DasSarma P;Lucas S;Copeland A;Lapidus A;Del Rio TG;Tice H;Dalin E;Bruce DC;Goodwin L;Pitluck S;Sims D;Brettin TS;Detter JC;Han CS;Larimer F;Hauser L;Land M;Ivanova N;Richardson P;Cavicchioli R;DasSarma S;Woese CR;Kyrpides NC, 2016, 'Complete genome sequence of the Antarctic Halorubrum lacusprofundi type strain ACAM 34', Standards in Genomic Sciences, vol. 11, http://dx.doi.org/10.1186/s40793-016-0194-2

Danovaro R;DellAnno A;Corinaldesi C;Rastelli E;Cavicchioli R;Krupovic M;Noble RT;Nunoura T;Prangishvili D, 2016, 'Virus-mediated archaeal hecatomb in the deep seafloor', Science Advances, vol. 2, pp. e1600492 - e1600492, http://dx.doi.org/10.1126/sciadv.1600492

Liao Y;Williams TJ;Walsh JC;Ji M;Poljak A;Curmi PM G;Duggin IG;Cavicchioli R, 2016, 'Developing a genetic manipulation system for the Antarctic archaeon, Halorubrum lacusprofundi: Investigating acetamidase gene function', Scientific Reports, vol. 6, http://dx.doi.org/10.1038/srep34639

Taha ;Siddiqui KS;Campanaro S;Najnin T;Deshpande N;Williams TJ;Aldrich-Wright J;Wilkins M;Curmi PM G;Cavicchioli R, 2016, 'Single TRAM domain RNA-binding proteins in Archaea: functional insight from Ctr3 from the Antarctic methanogen Methanococcoides burtonii', Environmental Microbiology, vol. 18, pp. 2810 - 2824, http://dx.doi.org/10.1111/1462-2920.13229

Tschitschko B;Williams TJ;Allen MA;Zhong L;Raftery MJ;Cavicchioli R, 2016, 'Ecophysiological distinctions of haloarchaea from a hypersaline Antarctic lake determined using metaproteomics.', Appl Environ Microbiol, vol. 82, pp. 3165 - 3173, http://dx.doi.org/10.1128/AEM.00473-16

Cavicchioli R, 2016, 'On the concept of a psychrophile.', ISME J, vol. 10, pp. 793 - 795, http://dx.doi.org/10.1038/ismej.2015.160

Najnin T;Siddiqui KS;Taha T;Elkaid N;Kornfeld G;Curmi PM G;Cavicchioli R, 2016, 'Characterization of a temperature-responsive two component regulatory system from the Antarctic archaeon, Methanococcoides burtonii.', Sci Rep, vol. 6, pp. 24278, http://dx.doi.org/10.1038/srep24278

Richards SL;Cawley AT;Cavicchioli R;Suann CJ;Pickford R;Raftery MJ, 2016, 'Aptamer based peptide enrichment for quantitative analysis of gonadotropin-releasing hormone by LC-MS/MS', Talanta, vol. 150, pp. 671 - 680, http://dx.doi.org/10.1016/j.talanta.2016.01.006

Cavicchioli R, 2015, 'Microbial ecology of Antarctic aquatic systems.', Nat Rev Microbiol, vol. 13, pp. 691 - 706, http://dx.doi.org/10.1038/nrmicro3549

Cavicchioli R;Erdmann S, 2015, 'The discovery of Antarctic RNA viruses: A new game changer', Molecular Ecology, vol. 24, pp. 4809 - 4811, http://dx.doi.org/10.1111/mec.13387

Tschitschko B;Williams TJ;Allen MA;Páez-Espino D;Kyrpides N;Zhong L;Raftery MJ;Cavicchioli R, 2015, 'Antarctic archaea–virus interactions: metaproteome-led analysis of invasion, evasion and adaptation', The ISME Journal, vol. 9, pp. 2094 - 2107, http://dx.doi.org/10.1038/ismej.2015.110

Sun T;Socki RA;Bish DL;Harvey RP;Bao H;Niles PB;Cavicchioli R;Tonui E, 2015, 'Lost cold Antarctic deserts inferred from unusual sulfate formation and isotope signatures', Nature Communications, vol. 6, http://dx.doi.org/10.1038/ncomms8579

Ertan H;Cassel C;Verma A;Poljak A;Charlton T;Aldrich-Wright J;Omar SM;Siddiqui KS;Cavicchioli R, 2015, 'A new broad specificity alkaline metalloprotease from a Pseudomonas sp. isolated from refrigerated milk: Role of calcium in improving enzyme productivity', Journal of Molecular Catalysis B: Enzymatic, vol. 113, pp. 1 - 8, http://dx.doi.org/10.1016/j.molcatb.2014.12.010

Luk A;Williams T;Erdmann S;Papke R;Cavicchioli R, 2014, 'Viruses of Haloarchaea', Life, vol. 4, pp. 681 - 715, http://dx.doi.org/10.3390/life4040681

Siddiqui KS;Ertan H;Charlton T;Poljak A;Daud Khaled AK;Yang X;Marshall G;Cavicchioli R, 2014, 'Versatile peroxidase degradation of humic substances: Use of isothermal titration calorimetry to assess kinetics, and applications to industrial wastes', Journal of Biotechnology, vol. 178, pp. 1 - 11, http://dx.doi.org/10.1016/j.jbiotec.2014.03.002

Williams TJ;Cavicchioli R, 2014, 'Marine metaproteomics: deciphering the microbial metabolic food web', Trends in Microbiology, http://dx.doi.org/10.1016/j.tim.2014.03.004

Williams TJ;Allen MA;DeMaere MZ;Cavicchioli R;Kyrpides NC;Tringe SG;Woyke T, 2014, 'Microbial ecology of an Antarctic hypersaline lake: genomic assessment of ecophysiology among dominant haloarchaea', ISME Journal, http://dx.doi.org/10.1038/ismej.2014.18

Lagkouvardos I;Weinmaier T;Lauro FM;Cavicchioli R;Rattei T;Horn M, 2014, 'Integrating metagenomic and amplicon databases to resolve the phylogenetic and ecological diversity of the Chlamydiae', ISME Journal, vol. 8, pp. 115 - 125, http://dx.doi.org/10.1038/ismej.2013.142

Wilkins D;van Sebille E;Rintoul SR;Lauro FM;Cavicchioli R, 2013, 'Advection shapes Southern Ocean microbial assemblages independent of distance and environment effects.', Nat Commun, vol. 4, pp. 2457, http://dx.doi.org/10.1038/ncomms3457

DeMaere MZ;Williams TJ;Allen MA;Brown MV;Gibson JA E;Rich J;Lauro FM;Dyall-Smith M;Davenport KW;Woyke T;Kyrpides NC;Tringe SG;Cavicchioli R, 2013, 'High level of intergenera gene exchange shapes the evolution of haloarchaea in an isolated Antarctic lake.', Proc Natl Acad Sci U S A, vol. 110, pp. 16939 - 16944, http://dx.doi.org/10.1073/pnas.1307090110

Matallana-Surget S;Cavicchioli R;Fauconnier C;Wattiez R;Leroy B;Joux F;Raftery MJ;Lebaron P, 2013, 'Shotgun Redox Proteomics: Identification and Quantitation of Carbonylated Proteins in the UVB-Resistant Marine Bacterium, Photobacterium angustum S14', PLoS ONE, vol. 8, pp. e68112 - e68112, http://dx.doi.org/10.1371/journal.pone.0068112

Yau S;Lauro FM;Williams TJ;Demaere MZ;Brown MV;Rich J;Gibson JA E;Cavicchioli R, 2013, 'Metagenomic insights into strategies of carbon conservation and unusual sulfur biogeochemistry in a hypersaline Antarctic lake', ISME Journal, vol. 7, pp. 1944 - 1961, http://dx.doi.org/10.1038/ismej.2013.69

Wilkins D;Lauro FM;Williams TJ;Demaere MZ;Brown MV;Hoffman JM;Andrews-Pfannkoch C;Mcquaid JB;Riddle MJ;Rintoul SR;Cavicchioli R, 2013, 'Biogeographic partitioning of Southern Ocean microorganisms revealed by metagenomics', Environmental Microbiology, vol. 15, pp. 1318 - 1333, http://dx.doi.org/10.1111/1462-2920.12035

Wilkins D;Yau S;Williams TJ;Allen MA;Brown MV;Demaere MZ;Lauro FM;Cavicchioli R, 2013, 'Key microbial drivers in Antarctic aquatic environments', FEMS Microbiology Reviews, vol. 37, pp. 303 - 335, http://dx.doi.org/10.1111/1574-6976.12007

Siddiqui KS;Williams TJ;Wilkins D;Yau S;Allen MA;Brown MV;Lauro FM;Cavicchioli R, 2013, 'Psychrophiles', Annual Review of Earth and Planetary Sciences, vol. 41, pp. 87 - 115, http://dx.doi.org/10.1146/annurev-earth-040610-133514

Williams TJ;Wilkins D;Long E;Evans F;Demaere MZ;Raftery MJ;Cavicchioli R, 2013, 'The role of planktonic Flavobacteria in processing algal organic matter in coastal East Antarctica revealed using metagenomics and metaproteomics', Environmental Microbiology, vol. 15, pp. 1302 - 1317, http://dx.doi.org/10.1111/1462-2920.12017

Swan BK;Tupper B;Sczyrba A;Lauro FM;Martinez-Garcia M;Gonźalez JM;Luo H;Wright JJ;Landry ZC;Hanson NW;Thompson BP;Poulton NJ;Schwientek P;Acinas SG;Giovannoni SJ;Moran MA;Hallam SJ;Cavicchioli R;Woyke T;Stepanauskas R, 2013, 'Prevalent genome streamlining and latitudinal divergence of planktonic bacteria in the surface ocean', Proceedings of the National Academy of Sciences of the United States of America, vol. 110, pp. 11463 - 11468, http://dx.doi.org/10.1073/pnas.1304246110

Grzymski JJ;Riesenfeld CS;Williams TJ;Dussaq AM;Ducklow H;Erickson M;Cavicchioli R;Murray AE, 2012, 'A metagenomic assessment of winter and summer bacterioplankton from Antarctica Peninsula coastal surface waters', ISME Journal, vol. 6, pp. 1901 - 1915, http://dx.doi.org/10.1038/ismej.2012.31

Brown MV;Lauro FM;Demaere MZ;Muir L;Wilkins D;Thomas T;Riddle MJ;Fuhrman JA;Andrews-Pfannkoch C;Hoffman JM;McQuaid JB;Allen A;Rintoul SR;Cavicchioli R, 2012, 'Global biogeography of SAR11 marine bacteria', Molecular Systems Biology, vol. 8, http://dx.doi.org/10.1038/msb.2012.28

Williams TJ;Long E;Evans F;Demaere MZ;Lauro FM;Raftery MJ;Ducklow H;Grzymski JJ;Murray AE;Cavicchioli R, 2012, 'A metaproteomic assessment of winter and summer bacterioplankton from Antarctic Peninsula coastal surface waters', ISME Journal, vol. 6, pp. 1883 - 1900, http://dx.doi.org/10.1038/ismej.2012.28

Ertan H;Siddiqui KS;Muenchhoff J;Charlton T;Cavicchioli R, 2012, 'Kinetic and thermodynamic characterization of the functional properties of a hybrid versatile peroxidase using isothermal titration calorimetry: Insight into manganese peroxidase activation and lignin', Biochimie, vol. 94, pp. 1221 - 1231, http://dx.doi.org/10.1016/j.biochi.2012.02.012

Cavicchioli R, 2011, 'Archaea - Timeline of the third domain', Nature Reviews Microbiology, vol. 9, pp. 51 - 61, http://dx.doi.org/10.1038/nrmicro2482

Cavicchioli R;Amils R;Wagner D;Mcgenity T, 2011, 'Life and applications of extremophiles', Environmental Microbiology, vol. 13, pp. 1903 - 1907, http://dx.doi.org/10.1111/j.1462-2920.2011.02512.x

Campanaro S;Williams TJ;Burg DW;De Francisci D;Treu L;Lauro FM;Cavicchioli R, 2011, 'Temperature-dependent global gene expression in the Antarctic archaeon Methanococcoides burtonii', Environmental Microbiology, vol. 13, pp. 2018 - 2038, http://dx.doi.org/10.1111/j.1462-2920.2010.02367.x

Cavicchioli R;Charlton T;Ertan H;Omar SM;Siddiqui KS;Williams TJ, 2011, 'Biotechnological uses of enzymes from psychrophiles', Microbial Biotechnology, vol. 4, pp. 449 - 460, http://dx.doi.org/10.1111/j.1751-7915.2011.00258.x

De Francisci D;Campanaro S;Kornfeld G;Siddiqui KS;Williams TJ;Ertan H;Treu L;Pilak O;Lauro FM;Harrop SJ;Curmi PM G;Cavicchioli R, 2011, 'The RNA polymerase subunits E/F from the Antarctic archaeon Methanococcoides burtonii bind to specific species of mRNA', Environmental Microbiology, vol. 13, pp. 2039 - 2055, http://dx.doi.org/10.1111/j.1462-2920.2010.02385.x

DeMaere MZ;Lauro FM;Thomas T;Yau S;Cavicchioli R, 2011, 'Simple high-throughput annotation pipeline (SHAP)', Bioinformatics, vol. 27, pp. 2431 - 2432, http://dx.doi.org/10.1093/bioinformatics/btr411

Yau S;Lauro FM;DeMaere MZ;Brown MV;Thomas T;Raftery MJ;Andrews-Pfannkoch C;Lewis M;Hoffman JM;Gibson JA;Cavicchioli R, 2011, 'Virophage control of antarctic algal host-virus dynamics', Proceedings of the National Academy of Sciences of the United States of America, vol. 108, pp. 6163 - 6168, http://dx.doi.org/10.1073/pnas.1018221108

Lauro FM;Demaere MZ;Yau S;Brown MV;Ng C;Wilkins D;Raftery MJ;Gibson JA;Andrews-Pfannkoch C;Lewis M;Hoffman JM;Thomas T;Cavicchioli R, 2011, 'An integrative study of a meromictic lake ecosystem in Antarctica', ISME Journal, vol. 5, pp. 879 - 895, http://dx.doi.org/10.1038/ismej.2010.185

Williams TJ;Lauro FM;Ertan H;Burg DW;Poljak A;Raftery MJ;Cavicchioli R, 2011, 'Defining the response of a microorganism to temperatures that span its complete growth temperature range (-2°C to 28°C) using multiplex quantitative proteomics', Environmental Microbiology, vol. 13, pp. 2186 - 2203, http://dx.doi.org/10.1111/j.1462-2920.2011.02467.x

Pilak O;Harrop SJ;Siddiqui KS;Chong K;De Francisci D;Burg D;Williams TJ;Cavicchioli R;Curmi PM G, 2011, 'Chaperonins from an Antarctic archaeon are predominantly monomeric: Crystal structure of an open state monomer', Environmental Microbiology, vol. 13, pp. 2232 - 2249, http://dx.doi.org/10.1111/j.1462-2920.2011.02477.x


Back to profile page