By Professor Rowena Anne Bull

Preprints

Foster CSP; Stelzer-Braid S; Deveson IW; Bull RA; Yeang M; Phan-Au J; Silva MR; van Hal SJ; Rockett RJ; Sintchenko V; Kim KW; Rawlinson WD, Assessment of inter-laboratory differences in SARS-CoV-2 consensus genome assemblies between public health laboratories in Australia, http://dx.doi.org/10.1101/2021.08.19.21262296

Maduranga S; Valencia BM; Sigera C; Weeratunga P; Fernando D; Rajapakse S; Rapadas M; Deveson IW; Lloyd AR; Bull R; Rodrigo C, Between- and within-host mutation of dengue virus, http://dx.doi.org/10.1101/2025.10.12.680595

Rouet R; Henry JY; Johansen MD; Sobti M; Balachandran H; Langley DB; Walker G; Lenthall H; Jackson J; Ubiparipovic S; Mazigi O; Schofield P; Burnett DL; Brown SHJ; Martinello M; Hudson B; Gilroy N; Post JJ; Kelleher A; Jäck H-M; Goodnow CC; Turville SG; Rawlinson WD; Bull RA; Stewart AG; Hansbro PM; Christ D, Broadly neutralizing SARS-CoV-2 antibodies through epitope-based selection from convalescent patients, http://dx.doi.org/10.1101/2022.10.19.512954

Kabir KMA; Sigera C; Maduranga S; Weeratunga P; Rajapakse S; Fernando D; Lloyd AR; Bull RA; Rodrigo C, Chikungunya masquerading as dengue infection in Sri Lanka uncovered by metagenomics, http://dx.doi.org/10.1101/2025.05.30.25328620

Garcia-Valtanen P; Hope CM; Masavuli MG; Yeow AEL; Balachandran H; Mekonnen ZA; Al-Delfi Z; Abayasingam A; Agapiou D; Stella AO; Aggarwal A; Gummow J; Ferguson C; O’Connor S; McCartney EM; Lynn DJ; Maddern G; Gowans EJ; Reddi BA; Shaw D; Kok-Lim C; Turville SG; Beard MR; Weiskopf D; Sette A; Bull RA; Barry SC; Grubor-Bauk B, COVID-19 convalescents exhibit deficient humoral and T cell responses to variant of concern Spike antigens at 12 month post-infection, http://dx.doi.org/10.1101/2021.11.08.21266035

Maduranga S; Valencia BM; Sigera C; Weeratunga P; Fernando D; Rajapakse S; Lloyd AR; Bull R; Stone H; Rodrigo C, DENcode: A model for haplotype-informed transmission probability of dengue virus, http://dx.doi.org/10.64898/2026.02.26.708194

Tennant E; Figtree M; Tallon J; Bull RA; Yeang M; Deveson IW; Ferguson JM; Adikari T; Holmes EC; Van Hal S; Hammond JM; Stevanovski I; Mitsakos K; Hilditch-Roberts D; Rawlinson W; Hudson B, Epidemiological and Genomic analysis of a Sydney Hospital COVID-19 Outbreak, http://dx.doi.org/10.1101/2021.02.17.21251943

Zhang H; Bull RA; Quadeer AA; McKay MR, HCV E1 influences the fitness landscape of E2 and may enhance escape from E2-specific antibodies, http://dx.doi.org/10.1101/2023.04.03.535505

Lohmann V; Rothhaar P; Heuss C; Tulessin M; Wang Z; Seong HG-T; Förster C; Quistrebert J; Chai H; Reineke M; Benning L; Honegger J; Hofmann M; Thimme R; Timm J; Cooke G; Schnitzler P; Merle U; Shoukry NH; Bruneau J; Rodrigo C; Lloyd A; Bull R; Ansari A; Mogler C; McLauchlan J; Forns X; Pérez-Del-Pulgar S, Highly replicating hepatitis C virus variants emerge in immunosuppressed patients causing severe disease, http://dx.doi.org/10.21203/rs.3.rs-6194507/v1

Rizzetto S; Eltahla AA; Lin P; Bull R; Lloyd AR; Ho JWK; Venturi V; Luciani F, Impact of sequencing depth and read length on single cell RNA sequencing data: lessons from T cells, http://dx.doi.org/10.1101/134130

Adhikari A; Abayasingam A; Rodrigo C; Agapiou D; Pandzic E; Brasher NA; Fernando BSM; Keoshkerian E; Li H; Kim HN; Lord M; Popovic G; Rawlinson W; Mina M; Post JJ; Hudson B; Gilroy N; Bartlett AW; Ahlenstiel G; Grubor-Bauk B; Dwyer D; Konecny P; Lloyd AR; Martinello M; Bull RA; Tedla N, Longitudinal characterisation of phagocytic and neutralisation functions of anti-Spike antibodies in plasma of patients after SARS-CoV-2 infection, http://dx.doi.org/10.1101/2021.12.21.473774

Kalemera MD; Cappella-Pujol J; Chumbe A; Underwood A; Bull RA; Schinkel J; Sliepen K; Grove J, Optimised cell systems for the investigation of hepatitis C virus E1E2 glycoproteins, http://dx.doi.org/10.1101/2020.06.18.159442

Foster CSP; Bull RA; Tedla N; Santiago F; Agapiou D; Adhikari A; Walker GJ; Shrestha LB; van Hal SJ; Kim KW; Rawlinson WD, Persistence of a SARS-CoV-2 variant with a frameshifting deletion for the duration of a major outbreak, http://dx.doi.org/10.1101/2022.09.06.22279658

Rouet R; Mazigi O; Walker GJ; Langley DB; Sobti M; Schofield P; Lenthall H; Jackson J; Ubiparipovic S; Henry JY; Abayasingam A; Burnett D; Kelleher A; Brink R; Bull RA; Turville S; Stewart AG; Goodnow CC; Rawlinson WD; Christ D, Potent SARS-CoV-2 binding and neutralization through maturation of iconic SARS-CoV-1 antibodies, http://dx.doi.org/10.1101/2020.12.14.422791

Kim KW; Deveson IW; Pang CNI; Yeang M; Naing Z; Adikari T; Hammond JM; Stevanovski I; Beukers AG; Verich A; Yin S; McFarlane D; Wilkins MR; Stelzer-Braid S; Bull RA; Craig ME; Hal SJV; Rawlinson WD, Respiratory viral co-infections among SARS-CoV-2 cases confirmed by virome capture sequencing, http://dx.doi.org/10.21203/rs.3.rs-105996/v1

Walker GJ; Naing Z; Stella AO; Yeang M; Caguicla J; Ramachandran V; Isaacs SR; Agapiou D; Bull RA; Stelzer-Braid S; Daly J; Gosbell IB; Hoad VC; Irving DO; Pink JM; Turville S; Kelleher AD; Rawlinson WD, SARS Coronavirus-2 microneutralisation and commercial serological assays correlated closely for some but not all enzyme immunoassays, http://dx.doi.org/10.1101/2020.12.07.20245696

Young C; Singh M; Jackson KJ; Field MA; Peters TJ; Angioletti-Uberti S; Frenkel D; Ravishankar S; Gupta M; Wang JJ; Agapiou D; Faulks ML; Al-Eryani G; Luciani F; Gordon TP; Reed JH; Danta M; Carr A; Kelleher AD; Dore GJ; Matthews G; Brink R; Bull RA; Suan D; Goodnow CC, Self-reactive B cells traverse a perfect storm of somatic mutagenesis to cause a virus-induced autoimmune disease, http://dx.doi.org/10.1101/2024.01.07.574561

Cai C; Samir J; Pirozyan MR; Adikari TN; Gupta M; Leung P; Hughes B; Van der Byl W; Rizzetto S; Elthala A; Keoshkerian E; Palgen J-L; Peters T; Nguyen THO; Louie R; Kedzierska K; Gaudieri S; Bull RA; Lloyd AR; Luciani F, Single cell multi-omics reveals early elevated function and multiple fates within human progenitor exhausted CD8+ T cells, http://dx.doi.org/10.1101/2021.09.09.459584

Walker MR; Leung P; Keoshkerian E; Pirozyan MR; Lloyd AR; Luciani F; Bull RA, Temporal dynamics of viral fitness and the adaptive immune response in HCV infection, http://dx.doi.org/10.1101/2024.09.07.611784

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