By Professor Rowena Anne Bull

Journal articles

Leung P; Bull R; Lloyd A; Luciani F, 2014, 'Erratum: "A bioinformatics pipeline for the analyses of viral escape dynamics and host immune responses during an infection" (BioMed Research International)', BioMed Research International, 2014, http://dx.doi.org/10.1155/2014/680249

Töpfer A; Marschall T; Bull RA; Luciani F; Schönhuth A; Beerenwinkel N, 2014, 'Viral quasispecies assembly via maximal clique enumeration', Lecture Notes in Computer Science (including subseries Lecture Notes in Artificial Intelligence and Lecture Notes in Bioinformatics), 8394 LNBI, pp. 309 - 310, http://dx.doi.org/10.1007/978-3-319-05269-4-25

Leung P; Bull R; Lloyd A; Luciani F, 2014, 'Erratum to “A Bioinformatics Pipeline for the Analyses of Viral Escape Dynamics and Host Immune Responses during an Infection”', BioMed research international, 2014

Hartfield M; Bull R; White PA; Lloyd A; Luciani F; Alizon S; Maher L, 2014, 'Evidence that hepatitis C virus genome partly controls infection outcome', Evolutionary Applications, 7, pp. 533 - 547, http://dx.doi.org/10.1111/eva.12151

Wong KKY; Rockman SP; Wong C; Bull RA; Stelzer-Braid S; Rawlinson WD, 2013, 'Comparison of influenza virus replication fidelity in vitro using selection pressure with monoclonal antibodies', Journal of Medical Virology, 85, pp. 1090 - 1094, http://dx.doi.org/10.1002/jmv.23532

Sugden PB; Pham TN; Ratnarajah S; Cameron B; Bull R; White PA; Michalak TI; Lloyd AR, 2013, 'Rare occurrence of occult hepatitis C virus in apparently uninfected injecting drug users: a two-centre, masked, case-control study', J Viral Hepat, 20, pp. 725 - 728, http://dx.doi.org/10.1111/jvh.12098

Sugden PB; Cameron B; Bull RA; White PA; Lloyd AR, 2012, 'Occult infection with hepatitis C virus: friend or foe?', , http://dx.doi.org/10.1038/icb.2012.20

Bull RA; Eden J-S; Luciani F; McElroy K; Rawlinson WD; White PA, 2012, 'Contribution of intra- and interhost dynamics to norovirus evolution', Journal of Virology, 86, pp. 3219 - 3229, http://dx.doi.org/10.1128/JVI.06712-11

Gouklani H; Bull RA; Beyer C; Coulibaly F; Gowens E; Drummer H; Netter H; White PA; Haqshenas G, 2012, 'Hepatitis C virus nonstructural protein 5B is involved in virus morphogenesis', Journal of Virology, 86, pp. 5080 - 5088, http://dx.doi.org/10.1128/JVI.07089-11

Grebely J; Pham ST; Matthews G; Petoumenos K; Bull RA; Yeung B; Rawlinson WD; Kaldor JM; Lloyd AR; Hellard M; Dore GJ; White PA; Bull ; Dolan K, 2012, 'Hepatitis C virus reinfection and superinfection among treated and untreated participants with recent infection', Hepatology, 55, pp. 1058 - 1069, http://dx.doi.org/10.1002/hep.24754

Luciani F; Bull RA; Lloyd AR; Bull , 2012, 'Next generation deep sequencing and vaccine design: Today and tomorrow', Trends in Biotechnology, 30, pp. 443 - 452, http://dx.doi.org/10.1016/j.tibtech.2012.05.005

Wong KKY; Bull RA; Stelzer-Braid S; Fennell M; Rawlinson W, 2011, 'Effect of reassortment on the nucleotide and amino acid changes of human A/H3N2 RNP subunits during 1998-2009.', Journal of clinical virology : the official publication of the Pan American Society for Clinical Virology, 51, pp. 270 - 275

Bull RA; Hyde J; MacKenzie J; Hansman G; Oka T; Takeda N; White PA, 2011, 'Comparison of the replication properties of murine and human calicivirus RNA-dependent RNA polymerases', Virus Genes, 42, pp. 16 - 27, http://dx.doi.org/10.1007/s11262-010-0535-y

Wong K; Bull RA; Stelzer-Braid S; Fennell M; Rawlinson WD, 2011, 'Effect of reassortment on the nucleotide and amino acid changes of human A/H3N2 RNP subunits during 1998-2009', Journal of Clinical Virology, 51, pp. 266 - 271, http://dx.doi.org/10.1016/j.jcv.2011.05.013

Bull RA; White PA, 2011, 'Mechanisms of GII.4 norovirus evolution', Trends in Microbiology, 19, pp. 233 - 240, http://dx.doi.org/10.1016/j.tim.2011.01.002

Bull RA; Luciani F; McElroy K; Gaudieri S; Pham ST; Chopra A; Cameron B; Maher L; Dore GJ; White PA; Lloyd AR, 2011, 'Sequential Bottlenecks Drive Viral Evolution in Early Acute Hepatitis C Virus Infection', PLoS Pathog, 7, pp. e1002243, http://dx.doi.org/10.1371/journal.ppat.1002243

Bull RA; Eden J-S; Rawlinson WD; White PA, 2010, 'Correction: Rapid Evolution of Pandemic Noroviruses of the GII.4 Lineage', PLoS Pathogens, 6, http://dx.doi.org/10.1371/annotation/19042899-9f1b-4ccc-b13e-2a8faf19421b

Byun R; Sheppeard V; Bull R, 2010, 'Bug breakfast in the Bulletin: Gastroenteritis outbreaks in institutions.', New South Wales public health bulletin, 21, pp. 267 - 268, http://dx.doi.org/10.1071/nb09038

Pham STP; Bull RA; Bennett JM; Rawlinson WD; Lloyd AR; Dore GJD; White PA; Bull , 2010, 'Frequent multiple hepatitis C virus infections among injection drug users in a prison setting', Hepatology, 52, pp. 1564 - 1572, http://dx.doi.org/10.1002/hep.23885

Eden J-S; Bull RA; Tu ET; McIver CJ; Michael JL; John AM; David WS; Jennie M; Rawlinson WD; White PA, 2010, 'Norovirus GII.4 variant 2006b caused epidemics of acute gastroenteritis in Australia during 2007 and 2008', Journal of Clinical Virology, 49, pp. 265 - 271, http://dx.doi.org/10.1016/j.jcv.2010.09.001

Bull RA; Eden J-S; Rawlinson WD; White PA, 2010, 'Rapid Evolution of Pandemic Noroviruses of the GII.4 lineage', PLoS Pathogens, 6, pp. e1000831 - e1000831, http://dx.doi.org/10.1371/journal.ppat.1000831

Tu ET; Bull RA; Greening G; Hewitt JE; Lyon M; Marshall J; Rawlinson WD; White PA, 2008, 'Epidemics of gastroenteritis during 2006 were associated with the spread of norovirus GII.4 variants 2006a and 2006b', Clinical Infectious Diseases, 46, pp. 413 - 420, http://dx.doi.org/10.1086/525259

Tu ET; Bull RA; Kim M; Mciver CJ; Heron LG; Rawlinson WD; White PA, 2008, 'Norovirus excretion in an aged-care setting', Journal of Clinical Microbiology, 46, pp. 2119 - 2121, http://dx.doi.org/10.1128/JCM.02198-07

Tu ET; Nguyen TV; Lee PJ; Bull RA; Musto JA; Hansman G; White PA; Rawlinson WD; Mciver CJ, 2007, 'Norovirus GII.4 strains and outbreaks, Australia', Emerging Infectious Diseases, 13, pp. 1128 - 1130, http://dx.doi.org/10.3201/eid1307.060999

Bull RA; Tanaka M; White PA, 2007, 'Norovirus recombination', Journal of General Virology, 88, pp. 3347 - 3359

Bull RA; Tu ET; Mciver CJ; Rawlinson WD; White PA, 2006, 'Emergence of a new norovirus genotype II.4 variant associated with global outbreaks of gastroenteritis', Journal of Clinical Microbiology, 44, pp. 327 - 333, http://dx.doi.org/10.1128/JCM.44.2.327-333.2006

Bull RA; Hansman G; Clancy LE; Tanaka M; Rawlinson WD; White PA, 2005, 'Norovirus recombination in ORF1/ORF2 overlap', Emerging Infectious Diseases, 11, pp. 1079 - 1085, http://dx.doi.org/10.3201/eid1107.041273

Conference Papers

Zhao Y; Keoshkerian E; Li H; An H; Bull RA; Luciani F; Lloyd AR, 2021, 'Functional characterisation and transcriptomic analysis of antigen-specific CD8 T memory stem cells (TSCM) generated from clonally expanded single TSCM cells in vitro', in EUROPEAN JOURNAL OF IMMUNOLOGY, WILEY, pp. 47 - 47, https://www.webofscience.com/api/gateway?GWVersion=2&SrcApp=PARTNER_APP&SrcAuth=LinksAMR&KeyUT=WOS:000753366400123&DestLinkType=FullRecord&DestApp=ALL_WOS&UsrCustomerID=891bb5ab6ba270e68a29b250adbe88d1

Underwood A; Wu B-R; Gupta M; Eltahla A; Luciani F; Lloyd A; Bull R, 2019, 'Defining correlates of protection against viral reinfection', in EUROPEAN JOURNAL OF IMMUNOLOGY, WILEY, PEOPLES R CHINA, Beijing, pp. 1053 - 1053, presented at 17th International Congress of Immunology of the International-Union-of-Immunological-Societies (IUIS), PEOPLES R CHINA, Beijing, 19 October 2019 - 23 October 2019, https://www.webofscience.com/api/gateway?GWVersion=2&SrcApp=PARTNER_APP&SrcAuth=LinksAMR&KeyUT=WOS:000490026903279&DestLinkType=FullRecord&DestApp=ALL_WOS&UsrCustomerID=891bb5ab6ba270e68a29b250adbe88d1

Horton JL; Kim KW; Pang CN; Jain K; Leung P; Isaacs SR; Bull RA; Luciani F; Wilkins MR; Lipkin WI; Rawlinson WD; Briese T; Craig ME, 2017, 'Virome-Capture Sequencing of the Gut and Plasma Virome in Children with Islet Autoimmunity', in DIABETES, AMER DIABETES ASSOC, pp. LB51 - LB52, https://www.webofscience.com/api/gateway?GWVersion=2&SrcApp=PARTNER_APP&SrcAuth=LinksAMR&KeyUT=WOS:000463087200190&DestLinkType=FullRecord&DestApp=ALL_WOS&UsrCustomerID=891bb5ab6ba270e68a29b250adbe88d1

Rizzetto S; Elthala A; Pirozyan RM; Keoshkerian E; Brownlee C; Lloyd A; Bull R; Luciani F, 2016, 'A computational framework for simultaneous single-cell characterization of surface phenotype and gene expression profile of antigen specific lymphocytes', in EUROPEAN JOURNAL OF IMMUNOLOGY, WILEY-BLACKWELL, AUSTRALIA, Melbourne, pp. 1165 - 1165, presented at International Congress of Immunology (ICI), AUSTRALIA, Melbourne, 21 August 2016 - 26 August 2016, https://www.webofscience.com/api/gateway?GWVersion=2&SrcApp=PARTNER_APP&SrcAuth=LinksAMR&KeyUT=WOS:000383610402743&DestLinkType=FullRecord&DestApp=ALL_WOS&UsrCustomerID=891bb5ab6ba270e68a29b250adbe88d1

Pirozyan RM; Leung P; Eltahla A; Rizzetto S; Nguyen O; Kedzierska K; Lloyd A; Bull R; Luciani F, 2016, 'Characterisation of the phenotypic profile of antigen specific cytotoxic T cell responses during primary HCV infection', in EUROPEAN JOURNAL OF IMMUNOLOGY, WILEY-BLACKWELL, AUSTRALIA, Melbourne, pp. 689 - 690, presented at International Congress of Immunology (ICI), AUSTRALIA, Melbourne, 21 August 2016 - 26 August 2016, https://www.webofscience.com/api/gateway?GWVersion=2&SrcApp=PARTNER_APP&SrcAuth=LinksAMR&KeyUT=WOS:000383610401578&DestLinkType=FullRecord&DestApp=ALL_WOS&UsrCustomerID=891bb5ab6ba270e68a29b250adbe88d1

Wu B-R; Walker MR; Eltahla A; Lloyd AR; Bull RA, 2016, 'Characterising nAb responses and B cell phenotypes in early primary HCV infection', in EUROPEAN JOURNAL OF IMMUNOLOGY, WILEY-BLACKWELL, AUSTRALIA, Melbourne, pp. 673 - 673, presented at International Congress of Immunology (ICI), AUSTRALIA, Melbourne, 21 August 2016 - 26 August 2016, https://www.webofscience.com/api/gateway?GWVersion=2&SrcApp=PARTNER_APP&SrcAuth=LinksAMR&KeyUT=WOS:000383610401543&DestLinkType=FullRecord&DestApp=ALL_WOS&UsrCustomerID=891bb5ab6ba270e68a29b250adbe88d1

Leung P; Bull R; Lloyd A; Luciani F, 2015, 'Co-evolving mutations in hepatitis C virus in the context of immune escape against neutralising antibody responses - A bioinformatic workflow for the analysis of co-evolving mutations in viral genomes', in International Workshop on Artificial Immune Systems, AIS 2015/ICSI3 2015 - Systems Immunology, Immunoinformatics and Immune-computation: Immunology without Borders, Proceedings, Sicily, Italy, presented at 2015 International Workshop on Artificial Immune Systems (AIS), Sicily, Italy, 17 July 2015 - 18 July 2015, http://dx.doi.org/10.1109/AISW.2015.7469236

Töpfer A; Marschall T; Bull RA; Luciani F; Schönhuth A; Beerenwinkel N, 2014, 'Viral quasispecies assembly via maximal clique enumeration', in Lecture Notes in Computer Science (including subseries Lecture Notes in Artificial Intelligence and Lecture Notes in Bioinformatics), pp. 309 - 310, http://dx.doi.org/10.1007/978-3-319-05269-4_25

Boelen L; Bull RA; Teutsch S; Lloyd AR; Luciani F, 2013, 'MOLECULAR EPIDEMIOLOGY AND SOCIAL NETWORK ANALYSIS TO TRACK HCV TRANSMISSION IN HIGH-RISK COMMUNITIES: INJECTING DRUG USERS IN PRISONS OF NEW SOUTH WALES, AUSTRALIA', in JOURNAL OF HEPATOLOGY, ELSEVIER SCIENCE BV, NETHERLANDS, Amsterdam, pp. S193 - S193, presented at International Liver Congress / 48th Annual Meeting of the European-Association-for-the-Study-of-the-Liver (EASL), NETHERLANDS, Amsterdam, 24 April 2013 - 28 April 2013, http://dx.doi.org/10.1016/S0168-8278(13)60473-0

Luciani F; Bull RA; Cameron B; Gaudieri S; Nguyen N; Yuen D; White PA; Purcell DFJ; Foung S; Lloyd AR, 2012, 'IMMUNE RESPONSES AGAINST FOUNDER HEPATITIS C VIRUSES IN ACUTE ASYMPTOMATIC SUBJECTS', in JOURNAL OF HEPATOLOGY, ELSEVIER SCIENCE BV, SPAIN, Barcelona, pp. S312 - S312, presented at 47th Annual Meeting of the European-Association-for-the-Study-of-the-Liver (EASL), SPAIN, Barcelona, 18 April 2012 - 22 April 2012, http://dx.doi.org/10.1016/S0168-8278(12)60809-5

Luciani F; Bull R; Mcelroy K; Pham S; Cameron B; Chopra A; Gaudieri S; Cooper D; Lloyd A; White P, 2011, 'EVOLUTIONARY DYNAMICS OF HEPATITIS C VIRUS DURING VERY EARLY INFECTIONS: VIROLOGICAL AND IMMUNOLOGICAL INSIGHTS', in JOURNAL OF HEPATOLOGY, ELSEVIER, GERMANY, Berlin, pp. S18 - S18, presented at 46th Annual Meeting of the European-Association-for-the-Study-of-the-Liver (EASL), GERMANY, Berlin, 30 March 2011 - 03 April 2011, http://dx.doi.org/10.1016/S0168-8278(11)60040-8

Conference Presentations

Bhattacharjee S; Joshi R; Yasir M; Adhikari A; Chughtai A; Heslop D; Bull R; Willcox M; MacIntyre R, 2021, 'Next-generation PPE: synergistic antimicrobial activity and low-cytotoxicity of graphene-derivative and nanoparticles on cotton/silk fabrics', presented at MRS Fall Meeting & Exhibit 2021, 06 December 2021 - 08 December 2021

Adhikari A; Rodrigo C; Bull R; Tedla N, 2021, 'Increase in antibody-dependent phagocytosis in a subset of HCV patients with anti-envelope antibodies', presented at 16th National Scientific Workshop of the Australian Center for HIV and Hepatitis Virology Research, Bowral, Australia

Sazzad H; Arroyo B; Bull R; Lloyd A; Rodrigo C, 2021, 'Optimised approach for high throughput hepatitis C virus amplification for transmission cluster identification in Australian prisons', presented at 16th National Scientific Workshop of the Australian Center for HIV and Hepatitis Virology Research, Bowral, Australia

Rodrigo C; Leung P; Adikari T; Riaz N; Bull R; Sigera C; Weeratunga P; Rajapakse S; Lloyd A; Fernando D, 2020, 'Resolving within-host, full length, dengue virus variants without haplotype reconstruction using Oxford Nanopore Technology', presented at ECCMID 2020, Paris, France

Rodrigo C; Riaz N; Adikari T; Sigera C; Rajapakse S; Fernando D; Weeratunga P; Fink K; Bull R; Luciani F; Lloyd A, 2019, 'A single nested PCR method for full length dengue virus genome amplification', presented at 7th European Congress of Virology, Rotterdam, The Netherlands

Rodrigo C; Leung P; Bull R; Lloyd A; Luciani F, 2019, 'Using networks to study epistatic interactions of HCV', presented at 14th Scientific Workship of the Australian Center for HIV and Hepatitis Virology Research, Canungra, Australia

Riaz N; Bull R; Leung P; Smith M; Barton K; Lloyd A; Rodrigo C, 2019, 'Whole genome long read sequencing of Hepatitis C virus and its applications', presented at 14th National Scientific Workshop of the Australian Center for HIV and Hepatitis Virology Research, Canungra, Australia

Abayasingam A; Leung P; Luciani F; Bull R; Lloyd A; Rodrigo C, 2018, 'Challenges in characterizing hepatitis C virus founder variants with deep sequencing', presented at 13th National Scientific Workshop of the Australian Center for HIV and Hepatitis Virology Research

Rodrigo C; Eltahla A; Bull R; Luciani F; Lloyd A, 2018, 'Genetic variability of Hepatitis C quasi-species in early infection', presented at Global Hepatitis Summit, Toronto, Canada

Rodrigo C; Eltahla A; Bull R; Luciani F; Lloyd A, 2018, 'Host IFNλ3 genotype and viral genotype are key determinants of within-host HCV genomic variation in early infection', presented at 13th National Scientific Workshop of the Australian Center for HIV and Hepatitis Virology Research, Yarra Valley, Australia

Rodrigo C; Eltahla A; Bull R; Luciani F; Lloyd A, 2017, 'Establishment of InC3 viral sequence repository and its applications', presented at 12th National Scientific Workshop of the Australian Center for HIV and Hepatitis Virology Research, Barossa Valley, Australia

Rodrigo C; Eltahla A; Bull R; Lloyd A; Luciani F, 2016, 'Bayesian evolutionary analysis of hepatitis C epidemic in Australia and North America in 20th century', presented at Australasian Viral Hepatitis Conference, GoldCoast, Australia

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