By Professor Ruiting Lan

Journal articles

Wang Y; Jiao Y; Lan R; Xu X; Liu G; Wang X; Zhang L; Pang H; Jin D; Dai H; Yuan X; Zhang W; Xu J; Ye C, 2015, 'Characterization of Listeria monocytogenes isolated from human Listeriosis cases in China', Emerging Microbes and Infections, 4, pp. 1 - 3, http://dx.doi.org/10.1038/emi.2015.50

Zheng H; Ji S; Liu Z; Lan R; Huang Y; Bai X; Gottschalk M; Xu J, 2015, 'Eight novel capsular polysaccharide synthesis gene loci identified in nontypeable Streptococcus suis isolates', Applied and Environmental Microbiology, 81, pp. 4111 - 4119, http://dx.doi.org/10.1128/AEM.00315-15

Liu L; Hao S; Lan R; Wang G; Xiao D; Sun H; Xu J, 2015, 'The type VI secretion system modulates flagellar gene expression and secretion in Citrobacter freundii and contributes to adhesion and cytotoxicity to host cells', Infection and Immunity, 83, pp. 2596 - 2604, http://dx.doi.org/10.1128/IAI.03071-14

Chen C; Zhang W; Zheng H; Lan R; Wang H; Du P; Bai X; Ji S; Meng Q; Jin D; Liu K; Jing H; Ye C; Gao GF; Wang L; Gottschalk EM; Xu J, 2014, 'Erratum: Correction for Chen et al., minimum core genome sequence typing of bacterial pathogens: A unified approach for clinical and public health microbiology (J. Clin. Microbiol. (2014) 52:11 (4120) 10.1128/JCM.02282-14)', Journal of Clinical Microbiology, 52, pp. 4120, http://dx.doi.org/10.1128/JCM.02282-14

Zheng H; Ji S; Lan R; Liu Z; Bai X; Zhang W; Gottschalk M; Xu J, 2014, 'Population analysis of Streptococcus suis Isolates from slaughtered swine by use of minimum core genome sequence typing', Journal of Clinical Microbiology, 52, pp. 3568 - 3572, http://dx.doi.org/10.1128/JCM.00536-14

Bart MJ; Harris SR; Advani A; Arakawa Y; Bottero D; Bouchez V; Cassiday PK; Chiang CS; Dalby T; Fry NK; Gaillard ME; van Gent M; Guiso N; Hallander HO; Harvill ET; He Q; van der Heide HGJ; Heuvelman K; Hozbor DF; Kamachi K; Karataev GI; Lan R; Lutyńska A; Maharjan RP; Mertsola J; Miyamura T; Octavia S; Preston A; Quail MA; Sintchenko V; Stefanelli P; Tondella ML; Tsang RSW; Xu Y; Yao SM; Zhang S; Parkhill J; Mooi FR, 2014, 'Global population structure and evolution of Bordetella pertussis and their relationship with vaccination', Mbio, 5, http://dx.doi.org/10.1128/mBio.01074-14

Li J; Lan R; Xiong Y; Ye C; Yuan M; Liu X; Chen X; Yu D; Liu B; Lin W; Bai X; Wang Y; Sun Q; Wang Y; Zhao H; Meng Q; Chen Q; Zhao A; Xu J, 2014, 'Sequential isolation in a patient of Raoultella planticola and Escherichia coli bearing a novel IS CR1 element carrying blaNDM-1', Plos One, 9, http://dx.doi.org/10.1371/journal.pone.0089893

Sun Q; Knirel YA; Lan R; Wang J; Senchenkova SN; Shashkov AS; Wang Y; Wang Y; Luo X; Xu J, 2014, 'Dissemination and serotype modification potential of pSFxv-2, an O-antigen PEtN modification plasmid in Shigella flexneri', Glycobiology, 24, pp. 305 - 313, http://dx.doi.org/10.1093/glycob/cwt115

Zheng H; Lan R; Zheng X; Cui Z; Liu Z; Bai X; Ji S; Gottschalk M; Xu J, 2014, 'Comparative genomic hybridization identifies virulence differences in Streptococcus suis', Plos One, 9, http://dx.doi.org/10.1371/journal.pone.0087866

Meng Q; Bai X; Zhao A; Lan R; Du H; Wang T; Shi C; Yuan X; Bai X; Ji S; Jin D; Yu B; Wang Y; Sun H; Liu K; Xu J; Xiong Y, 2014, 'Characterization of Shiga toxin-producing Escherichia coli isolated from healthy pigs in China', BMC Microbiology, 14, http://dx.doi.org/10.1186/1471-2180-14-5

Lee H; Ma R; Grimm MC; Riordan SM; Lan R; Zhong L; Raftery M; Zhang L, 2014, 'Examination of the anaerobic growth of Campylobacter concisus strains', International Journal of Microbiology, 2014, http://dx.doi.org/10.1155/2014/476047

Knirel YA; Wang J; Luo X; Senchenkova SN; Lan R; Shpirt AM; Du P; Shashkov AS; Zhang N; Xu J; Sun Q, 2014, 'Genetic and structural identification of an O-acyltransferase gene (oacC) responsible for the 3/4-O-acetylation on rhamnose III in Shigella flexneri serotype 6', BMC Microbiology, 14, http://dx.doi.org/10.1186/s12866-014-0266-7

Zhang N; Lan R; Sun Q; Wang J; Wang Y; Zhang J; Yu D; Hu W; Hu S; Dai H; Du P; Wang H; Xu J, 2014, 'Genomic portrait of the evolution and epidemic spread of a recently emerged multidrug-resistant shigella flexneri clone in China', Journal of Clinical Microbiology, 52, pp. 1119 - 1126, http://dx.doi.org/10.1128/JCM.02669-13

Wang J; Knirel YA; Lan R; Senchenkova SN; Luo X; Perepelov AV; Wang Y; Shashkov AS; Xu J; Sun Q, 2014, 'Identification of an O-acyltransferase gene (oacB) that mediates 3-and 4-O-acetylation of Rhamnose III in Shigella flexneri O antigens', Journal of Bacteriology, 196, pp. 1525 - 1531, http://dx.doi.org/10.1128/JB.01393-13

Lam C; Octavia S; Sintchenko V; Gilbert GL; Lan R, 2014, 'Investigating genome reduction of Bordetella pertussis using a multiplex PCR-based reverse line blot assay (mPCR/RLB)', BMC Research Notes, 7, http://dx.doi.org/10.1186/1756-0500-7-727

Lam C; Octavia S; Ricafort L; Sintchenko V; Gilbert GL; Wood N; McIntyre P; Marshall H; Guiso N; Keil AD; Lawrence A; Robson J; Hogg G; Lan R, 2014, 'Rapid increase in pertactin-deficient Bordetella pertussis isolates, Australia', Emerging Infectious Diseases, 20, pp. 626 - 633, http://dx.doi.org/10.3201/eid2004.131478

Wang J; Lan R; Knirel YA; Luo X; Senchenkova SN; Shashkov AS; Xu J; Sun Q, 2014, 'Serological identification and prevalence of a novel o-antigen epitope linked to 3-and 4-o-acetylated rhamnose III of lipopolysaccharide in shigella flexneri', Journal of Clinical Microbiology, 52, pp. 2033 - 2038, http://dx.doi.org/10.1128/JCM.00197-14

Sun Q; Knirel YA; Wang J; Luo X; Senchenkova SN; Lan R; Shashkov AS; Xu J, 2014, 'Serotype-converting bacteriophage SfII encodes an acyltransferase protein that mediates 6-O-acetylation of GlcNAc in Shigella flexneri O-antigens, conferring on the host a novel O-antigen epitope', Journal of Bacteriology, 196, pp. 3656 - 3666, http://dx.doi.org/10.1128/JB.02009-14

Dissanayake DRA; Octavia S; Lan R, 2014, 'Population structure and virulence content of avian pathogenic Escherichia coli isolated from outbreaks in Sri Lanka', Veterinary Microbiology, 168, pp. 403 - 412, http://dx.doi.org/10.1016/j.vetmic.2013.11.028

Pang S; Octavia S; Feng L; Liu B; Reeves PR; Lan R; Wang L, 2013, 'Genomic diversity and adaptation of Salmonella enterica serovar Typhimurium from analysis of six genomes of different phage types', BMC Genomics, 14, http://dx.doi.org/10.1186/1471-2164-14-718

Mahendran V; Tan YS; Riordan SM; Grimm MC; Day AS; Lemberg DA; Octavia S; Lan R; Zhang L, 2013, 'The Prevalence and Polymorphisms of Zonula Occluden Toxin Gene in Multiple Campylobacter concisus Strains Isolated from Saliva of Patients with Inflammatory Bowel Disease and Controls', Plos One, 8, http://dx.doi.org/10.1371/journal.pone.0075525

Liu Z; Zheng H; Gottschalk M; Bai X; Lan R; Ji S; Liu H; Xu J, 2013, 'Development of Multiplex PCR Assays for the Identification of the 33 Serotypes of Streptococcus suis', PLoS ONE, 8, pp. e72070 - e72070, http://dx.doi.org/10.1371/journal.pone.0072070

Chen C; Zhang W; Zheng H; Lan R; Wang H; Du P; Bai X; Ji S; Meng Q; Jin D; Liu K; Jing H; Ye C; Gao GF; Wang L; Gottschalk M; Xu J, 2013, 'Minimum core genome sequence typing of bacterial pathogens: A unified approach for clinical and public health microbiology', Journal of Clinical Microbiology, 51, pp. 2582 - 2591, http://dx.doi.org/10.1128/JCM.00535-13

Sun Q; Lan R; Wang J; Xia S; Wang Y; Wang Y; Jin D; Yu B; Knirel YA; Xu J, 2013, 'Identification and Characterization of a Novel Shigella flexneri Serotype Yv in China', Plos One, 8, http://dx.doi.org/10.1371/journal.pone.0070238

Octavia S; Salim A; Kurniawan J; Lam C; Leung Q; Ahsan S; Reeves PR; Nair GB; Lan R, 2013, 'Population Structure and Evolution of Non-O1/Non-O139 Vibrio cholerae by Multilocus Sequence Typing', Plos One, 8, http://dx.doi.org/10.1371/journal.pone.0065342

Bai X; Zhao A; Lan R; Xin Y; Xie H; Meng Q; Jin D; Yu B; Sun H; Lu S; Xu J; Xiong Y, 2013, 'Shiga Toxin-Producing Escherichia coli in Yaks (Bos grunniens) from the Qinghai-Tibetan Plateau, China', PLoS ONE, 8, pp. e65537 - e65537, http://dx.doi.org/10.1371/journal.pone.0065537

Zhao H; Chen C; Xiong Y; Xu X; Lan R; Wang H; Yao X; Bai X; Liu X; Meng Q; Zhang X; Sun H; Zhao A; Bai X; Cheng Y; Chen Q; Ye C; Xu J, 2013, 'Global Transcriptional and Phenotypic Analyses of Escherichia coli O157:H7 Strain Xuzhou21 and Its pO157_Sal Cured Mutant', PLoS ONE, 8, pp. e65466 - e65466, http://dx.doi.org/10.1371/journal.pone.0065466

Luo Y; Ye J; Jin D; Ding G; Zhang Z; Mei L; Octavia S; Lan R, 2013, 'Molecular analysis of non-O1/non-O139 Vibrio cholerae isolated from hospitalised patients in China', BMC Microbiology, 13, http://dx.doi.org/10.1186/1471-2180-13-52

Sun Q; Lan R; Wang Y; Wang J; Wang Y; Li P; Du P; Xu J, 2013, 'Isolation and genomic characterization of SfI, a serotype-converting bacteriophage of Shigella flexneri', BMC Microbiology, 13, http://dx.doi.org/10.1186/1471-2180-13-39

Xu YM; Xu XF; Lan R; Xiong Y; Ye C; Ren ZH; Liu L; Zhao A; Wu LF; Xu J, 2013, 'An O Island 172 Encoded RNA Helicase Regulates the Motility of Escherichia coli O157:H7', PLoS ONE, 8, pp. Article number e64211, http://dx.doi.org/10.1371/journal.pone.0064211

Knirel YA; Lan R; Senchenkova SN; Wang J; Shashkov AS; Wang YM; Perepelov AV; Xiong Y; Xu J; Sun QZ, 2013, 'O-antigen structure of Shigella flexneri serotype Yv and effect of the lpt-O gene variation on phosphoethanolamine modification of S. flexneri O-antigens', Glycobiology, 23, pp. 475 - 485, http://dx.doi.org/10.1093/glycob/cws222

Meng Q; Xiong Y; Lan R; Ye C; Wang T; Qi T; Wang Y; Wang H; Bai X; Bai X; Ji S; Jin D; Yuan X; Zhao A; Sun H; Jing H; Xu J, 2013, 'SNP genotyping of enterohemorrhagic Escherichia coli O157:H7 isolates from China and genomic identity of the 1999 Xuzhou outbreak', Infection, Genetics and Evolution, 16, pp. 275 - 281, http://dx.doi.org/10.1016/j.meegid.2013.02.018

Shashkov AS; Senchenkova SN; Sun Q; Lan R; Wang J; Perepelov AV; Knirel YA; Xu J, 2013, 'Structure of the O-antigen of a novel Shigella flexneri serotype, 1d (I: 7,8)', Carbohydrate Research, 373, pp. 93 - 96, http://dx.doi.org/10.1016/j.carres.2013.03.015

Grubman A; Seeman T; Polekhina G; Walker SK; Tye H; Wilson T; Lan R; Mitchell HM; Sutton P; Ferrero RL, 2012, '618 Gene Polymorphisms in Host-Adapted Helicobacter pylori: Loss of Type Four Secretion Functions Independent of the cag Pathogenicity Island', Gastroenterology, 142, pp. S - 121, http://dx.doi.org/10.1016/s0016-5085(12)60458-2

Xiong Y; Wang P; Lan R; Ye C; Wang H; Ren J; Jing H; Wang Y; Zhou Z; Bai X; Cui Z; Luo X; Zhao A; Wang Y; Zhang S; Sun H; Wang L; Xu J, 2012, 'A novel escherichia coli O157:H7 clone causing a major hemolytic uremic syndrome outbreak in China', PLoS ONE, 7, pp. e36144, http://dx.doi.org/10.1371/journal.pone.0036144

Sun Q; Knirel YA; Lan R; Wang J; Senchenkova SN; Jin D; Shashkov AS; Xia S; Perepelov AV; Chen Q; Wang Y; Wang H; Xu J, 2012, 'A novel plasmid-encoded serotype conversion mechanism through addition of phosphoethanolamine to the O-antigen of shigella flexneri.', PLoS ONE, 7, pp. e46095, http://dx.doi.org/10.1371/journal.pone.0046095

Luo X; Sun Q; Lan R; Wang J; Li Z; Xia S; Zhang J; Wang Y; Jin D; Wang Y; Wang Y; Yu B; Cui Z; Xu J, 2012, 'Emergence of a novel Shigella flexneri serotype 1d in China.', Diagnostic Microbiology and Infectious Disease, 74, pp. 316 - 319, http://dx.doi.org/10.1016/j.diagmicrobio.2012.06.022

Wang Y; Zhao A; Zhu R; Lan R; Jin D; Cui Z; Wang Y; Li Z; Wang Y; Xu J; Ye C, 2012, 'Genetic diversity and molecular typing of Listeria monocytogenes in China.', BMC Microbiology, 12, pp. 1 - 9, http://www.biomedcentral.com/1471-2180/12/119

Pang S; Octavia S; Reeves PR; Wang Q; Gilbert GL; Sintchenko V; Lan R, 2012, 'Genetic relationships of phage types and single nucleotide polymorphism typing of Salmonella enterica serovar Typhimurium', Journal of Clinical Microbiology, 50, pp. 727 - 734, http://dx.doi.org/10.1128/JCM.01284-11

Sun Q; Lan R; Wang Y; Wang J; Xia S; Wang Y; Zhang J; Yu D; Li Z; Jing H; Xu J, 2012, 'Identification of a divergent O -acetyltransferase gene oac 1b from Shigella flexneri serotype 1b strains', Emerging Microbes & Infections, 1, pp. 1 - 7, http://dx.doi.org/10.1038/emi.2012.22

Ismail Y; Mahendran V; Octavia S; Day AS; Riordan S; Grimm M; Lan R; Lemberg DA; Tran TAT; Zhang L, 2012, 'Investigation of the enteric pathogenic potential of oral campylobacter concisus strains isolated from patients with inflammatory bowel disease', PLoS One, 7(5), pp. 1 - 11, http://www.plosone.org/

Bai L; Xia S; Lan R; Liu L; Ye C; Wang Y; Jin D; Cui Z; Jing H; Xiong Y; Bai X; Sun H; Zhang J; Wang L; Xu J, 2012, 'Isolation and characterization of cytotoxic,aggregative Citrobacter freundii.', PLoS One, 7, pp. e33054, http://dx.doi.org/10.1371/journal.pone.0033054

Lam C; Octavia S; Reeves PR; Lan R, 2012, 'Multi-locus variable number tandem repeat analysis of 7th pandemic vibrio cholerae.', BMC Microbiology, 12, pp. 1 - 11, http://www.biomedcentral.com/1471-2180/12/82

Octavia S; Sintchenko V; Gilbert GL; Lawrence AL; Keil AD; Hogg G; Lan R, 2012, 'Newly emerging clones of bordetella pertussis carrying prn2 and ptxP3 alleles implicated in Australian pertussis epidemic in 2008-2010', Journal of Infectious Diseases, 205, pp. 1220 - 1224, http://dx.doi.org/10.1093/infdis/jis178

Lam C; Octavia S; Bahrame Z; Sintchenko V; Gilbert GL; Lan R, 2012, 'Selection and emergence of pertussis toxin promoter ptxP3 allele in the evolution of Bordetella pertussis', Infection Genetics and Evolution, 12, pp. 492 - 495, http://dx.doi.org/10.1016/j.meegid.2012.01.001

Cashmore AW; Lan R; Macartney KK, 2011, 'Bug breakfast in the Bulletin. Pertussis in NSW and its prevention in infants and children.', New South Wales Public Health Bulletin, 22, pp. 236, http://dx.doi.org/10.1071/nb11032

Cashmore AW; Lan R; Macartney K, 2011, 'Bug breakfast in the Bulletin. Pertussis in NSW and its prevention in infants and children.', NSW Public Health Bulletin, 22, pp. 236 - 236

Lin FP; Lan R; Sintchenko V; Kong F; Gilbert GL; Coiera E, 2011, 'Computational genome-wide analysis of phylogenetic profiles reveal potential virulence genes of Streptococcus agalactiae', PLoS One, 6, pp. e17964, http://dx.doi.org/10.1371/journal.pone.0017964

Sun Q; Lan R; Wang Y; Zhao A; Zhang S; Wang J; Wang Y; Xia S; Jin D; Cui Z; Zhao H; Li Z; Ye C; Zhang S; Jing H; Xu J, 2011, 'Development of a multiplex PCR assay targeting O-antigen modification genes for molecular serotyping of Shigella flexneri', Journal of Clinical Microbiology, 49, pp. 3766 - 3770, http://dx.doi.org/10.1128/JCM.01259-11

Sun Q; Lan R; Wang Y; Wang J; Luo X; Zhang S; Li P; Wang Y; Ye C; Jing H; Xu J, 2011, 'Genesis of a novel Shigella flexneri serotype by sequential infection of serotype-converting bacteriophages SfX and SfI', BMC Microbiology, 11, pp. 269, http://dx.doi.org/10.1186/1471-2180-11-269

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