By Professor Tri Giang Phan

Preprints

Bulloch S; Xu T; Herrman D; Timpson P; Phan TG; Lin Y-H; Banno M; Lim YJ; Lee WM, 2025, Defocused reflectance imaging for low numerical aperture, large field of view quantitative live cell imaging studies, http://dx.doi.org/10.1101/2025.03.24.645046

Khoo WH; Jackson K; Phetsouphanh C; Zaunders JJ; Alquicira-Hernandez J; Yazar S; Ruiz-Diaz S; Singh M; Dhenni R; Kyaw W; Tea F; Merheb V; Lee FXZ; Burrell R; Howard-Jones A; Koirala A; Zhou L; Yuksel A; Catchpoole DR; Lai CL; Vitagliano TL; Rouet R; Christ D; Tang B; West NP; George S; Gerrard J; Croucher PI; Kelleher AD; Goodnow CG; Sprent JD; Powell JD; Brilot F; Nanan R; Hsu PS; Deenick EK; Britton PN; Phan TG, Clonal dynamics of SARS-CoV-2-specific T cells in children and adults with COVID-19, http://dx.doi.org/10.1101/2022.01.30.478400

Kyaw W; Chai RC; Khoo WH; Goldstein LD; Croucher PI; Murray JM; Phan TG, ENTRAIN: integrating trajectory inference and gene regulatory networks with spatial data to co-localize the receptor-ligand interactions that specify cell fate, http://dx.doi.org/10.1101/2023.07.09.548284

Zammit NW; Gray PE; Siggs OM; Yap JY; Russell A; Cultrone D; Warren J; Walters SN; Brink R; Zahra D; Burnett DL; Gayevskiy V; Minoche AE; Ziegler JB; Craig ME; Wong M; Benitez-Aguirre P; Teo J; Cowley MJ; Dinger ME; Tangye SG; Burke C; Phan TG; Goodnow CC; Grey ST, Environmental and genetic disease modifiers of haploinsufficiency of A20, http://dx.doi.org/10.1101/2022.03.19.485004

Phetsouphanh C; Khoo WH; Jackson K; Klemm V; Howe A; Aggarwal A; Akerman A; Milogiannakis V; Stella AO; Rouet R; Schofield P; Faulks ML; Law H; Danwilai T; Starr M; Munier CML; Christ D; Singh M; Croucher PI; Brilot-Turville F; Turville S; Phan TG; Dore GJ; Darley D; Cunningham P; Matthews GV; Kelleher AD; Zaunders JJ, High titre neutralizing antibodies in response to SARS-CoV-2 infection require RBD-specific CD4 T cells that include proliferative memory cells, http://dx.doi.org/10.1101/2022.07.22.22277947

Singh M; Al-Eryani G; Carswell S; Ferguson JM; Blackburn J; Barton K; Roden D; Luciani F; Phan T; Junankar S; Jackson K; Goodnow CC; Smith MA; Swarbrick A, High-throughput targeted long-read single cell sequencing reveals the clonal and transcriptional landscape of lymphocytes, http://dx.doi.org/10.1101/424945

Pillay A; Yeola A; Tea F; Denkova M; Houston S; Burrell R; Merheb V; Lee FXZ; Moran L; Jadhav A; Sterling K; Lai CL; Vitagliano TL; Aggarwal A; Catchpoole D; Wood N; Phan TG; Nanan R; Hsu P; Turville SG; Britton PN; Brilot F, Infection and vaccine induced Spike antibody responses against SARS-CoV-2 Variants of concern in immune naïve children and adults, http://dx.doi.org/10.21203/rs.3.rs-2262275/v1

Al-Eryani G; Bartonicek N; Chan C-L; Anderson A; Harvey K; Wu SZ; Roden D; Wang T; Reeves J; Yeung BZ; Masle-Farquhar E; Goodnow CC; Ma C; Phan TG; Lundeberg J; Junankar S; Swarbrick A, Integration of single-cell RNA and protein data identifies novel clinically-relevant lymphocyte phenotypes in breast cancers, http://dx.doi.org/10.1101/2022.05.31.494081

Gray LG; Telfser A; Hu H; Kane A; Deenick EK; Phan TG; Ballouz S, Machine learning reveals X chromosome transcriptional signatures that predict systemic lupus erythematosus in females, http://dx.doi.org/10.21203/rs.3.rs-8991344/v1

Chai RC; Lundberg M; Freudenthal B; Smith JT; Boughton AP; Zhang Y; Flynn KA; Frysz M; Corr AP; Khoo WH; Komla-Ebri D; Dack MRG; Guilfoyle SE; Logan JG; Butterfield NC; Leitch VD; Pollard AS; Mäkitie RE; Bradford N; Ramos-Mucci L; Vilas-Zornoza A; Chen Y; Yip RKH; Er J; Tan SZ; McDonald MM; Youlten SE; Sergio CM; Castro-Martinez A; Young SG; Skorokhodova E; Evans DM; Powell JE; de Leeuw CA; Ewing AD; Eisman JA; Blank RD; Phan TG; Group IFOMRSBDW; Lagendijk AK; Hawkins ED; Oh HL; McIntyre R; Hessel EM; Taylor-King JP; Baldock PA; Duncan EL; Williams GR; Bassett JHD; Croucher PI; Kemp JP, Multiscale analysis and functional validation of the cellular and genetic determinants of skeletal disease, http://dx.doi.org/10.1101/2024.12.16.628792

Long G; Wilmott J; Shklovskaya E; Satgunseelan L; Mao Y; Perry K; Diefenbach R; Gide T; Shivalingam B; Buckland M; Gonzalez M; Caixeiro N; Vergara I; Bai X; Hsiao E; Rawson R; Silva ID; Palendira U; Phan T; Menzies A; Carlino M; Quek C; Grimmond S; Vissers J; Yeo D; Rasko J; Khasraw M; Neyns B; Reardon D; Ashley D; Wheeler H; Back M; Drummond J; Scolyer R; Rizos H, Neoadjuvant Triplet Immune Checkpoint Blockade in Newly Diagnosed Glioblastoma, http://dx.doi.org/10.21203/rs.3.rs-4255559/v1

Alquicira-Hernandez J; Powell JE; Phan TG, No evidence that plasmablasts transdifferentiate into developing neutrophils in severe COVID-19 disease, http://dx.doi.org/10.1101/2020.09.27.312538

Youlten SE; Kemp JP; Logan JG; Ghirardello EJ; Sergio CM; Dack MRG; Guilfoyle SE; Leitch VD; Butterfield NC; Komla-Ebri D; Chai RC; Corr AP; Smith JT; Mohanty S; Morris JA; McDonald MM; Quinn JMW; McGlade AR; Bartonicek N; Jansson M; Hatzikotoulas K; Irving MD; Beleza-Meireles A; Rivadeneira F; Duncan E; Richards JB; Adams DJ; Lelliott CJ; Brink R; Phan TG; Eisman JA; Evans DM; Zeggini E; Baldock PA; Bassett JHD; Williams GR; Croucher PI, Osteocyte Transcriptome Mapping Identifies a Molecular Landscape Controlling Skeletal Homeostasis and Susceptibility to Skeletal Disease, http://dx.doi.org/10.1101/2020.04.20.051409

Murphy KJ; Chambers CR; Reed DA; Channon LM; Mills NE; McKay SE; Lee V; Howell AE; Tran AM; Nobis M; Magenau A; Stoehr J; Pereira BA; Kuepper N; Ritchie S; Gordon K; Trpceski M; Tyma VM; Hafiz S; Johri V; Ang A; Barkauskas DS; Vennin C; Wang XQ; Naeini MM; Meyer B; Parker AL; Gummadi S; Chitti SV; Fajardo DC; Zaratzian A; Tayao M; Da Silva A; Initiative APG; Atlas APM; Cesare AJ; Mathivanan S; Stirzaker C; Latham SL; Croucher DR; Sharbeen G; Phillips PA; Goldstein LD; Lyons RJ; Nagrial A; Pavlakis N; Gill AJ; Biankin AV; Samra J; Caldon CE; Evans TRJ; Chantrill L; Horvath LG; Sansom OJ; Morton JP; Phan TG; Wang Y; Cock T-A; Kinkel SA; Bishop A; Devlin M; Lambert J; Cox TR; Pajic M; Burns CJ; Herrmann D; Timpson P, Pulsed priming with the FAK inhibitor narmafotinib enhances both gemcitabine/Abraxane and FOLFIRINOX chemotherapy response in pancreatic cancer, http://dx.doi.org/10.64898/2026.07.23.740234

Gration B; Chai RC; Young SG; Sergio CM; Skorokhodova E; Smith JT; Castro-Martinez A; Bray A; Lin X; Yan C; Kao J; Perram J; Lai S; Lau L; Weilbaecher KN; Moore J; Pocock N; Chaffer CL; Center J; Phan TG; McCaughan G; Croucher PI, Romosozumab Safely Restores Bone Mass in Multiple Myeloma via Osteoblast Reprogramming: A Phase IIa Study, http://dx.doi.org/10.64898/2026.07.02.26357196

Liu J; Lim YJ; Herrmann D; Timpson P; Phan TG; Liu H; Guo M; Lee WM, Using rotational integration of oblique interferometric scattering (RO-iSCAT) to track axial spatiotemporal responses of membrane protrusions, http://dx.doi.org/10.1101/2025.03.23.644841

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